Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30500 * 125.65231 * 2 1 4 4 C 1.34128 * 109.25581 * 180.29519 * 3 2 1 5 5 C 1.34663 * 108.02065 * 359.72124 * 4 3 2 6 6 C 1.50707 * 126.58927 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46644 * 154.95656 * 6 5 4 8 8 C 1.53000 * 109.47373 * 274.96216 * 6 5 4 9 9 C 1.50703 * 109.46880 * 34.96415 * 6 5 4 10 10 H 1.07999 * 119.99915 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99844 * 180.02562 * 9 6 5 12 12 N 1.31513 * 120.00166 * 179.97438 * 11 9 6 13 13 Si 1.86807 * 119.99953 * 359.97438 * 11 9 6 14 14 H 1.48500 * 109.47034 * 90.00232 * 13 11 9 15 15 H 1.48494 * 109.47072 * 210.00443 * 13 11 9 16 16 H 1.48499 * 109.47030 * 330.00375 * 13 11 9 17 17 N 1.35044 * 125.65031 * 179.82369 * 2 1 3 18 18 C 1.46497 * 126.39956 * 359.97438 * 17 2 1 19 19 C 1.53009 * 109.46962 * 65.87858 * 18 17 2 20 20 C 1.52998 * 109.47004 * 305.88290 * 18 17 2 21 21 H 1.09007 * 109.46592 * 275.06202 * 1 2 3 22 22 H 1.08997 * 109.46978 * 35.06045 * 1 2 3 23 23 H 1.08998 * 109.47114 * 155.06556 * 1 2 3 24 24 H 1.08007 * 125.98731 * 179.72303 * 4 3 2 25 25 H 1.09000 * 109.47067 * 180.02562 * 8 6 5 26 26 H 1.09004 * 109.46842 * 299.99990 * 8 6 5 27 27 H 1.08995 * 109.46903 * 59.99689 * 8 6 5 28 28 H 0.96997 * 120.00285 * 179.97438 * 12 11 9 29 29 H 1.08996 * 109.47590 * 185.87627 * 18 17 2 30 30 H 1.08996 * 109.46958 * 293.85231 * 19 18 17 31 31 H 1.09000 * 109.46665 * 53.84996 * 19 18 17 32 32 H 1.08998 * 109.47159 * 173.85089 * 19 18 17 33 33 H 1.08997 * 109.47401 * 179.97438 * 20 18 17 34 34 H 1.08997 * 109.47377 * 299.99578 * 20 18 17 35 35 H 1.09007 * 109.47222 * 59.99749 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 -0.0065 5 6 3.5926 -0.6643 -0.0045 6 6 4.8276 -1.5280 -0.0094 7 1 4.5939 -2.4984 0.4284 8 6 5.3098 -1.7204 -1.4486 9 6 5.9107 -0.8602 0.7982 10 1 5.7235 0.0942 1.2677 11 6 7.1408 -1.4673 0.9369 12 7 8.0862 -0.8844 1.6413 13 14 7.4646 -3.1179 0.1243 14 1 8.0038 -2.8997 -1.2420 15 1 8.4514 -3.8811 0.9298 16 1 6.1960 -3.8851 0.0391 17 7 2.2941 -1.0974 0.0034 18 6 1.8426 -2.4910 0.0082 19 6 1.1241 -2.7989 -1.3072 20 6 0.8815 -2.7117 1.1780 21 1 -0.3633 0.0907 1.0237 22 1 -0.3633 0.8412 -0.5903 23 1 -0.3633 -0.9319 -0.4332 24 1 4.4099 1.3410 -0.0124 25 1 6.2027 -2.3454 -1.4521 26 1 4.5263 -2.2034 -2.0327 27 1 5.5433 -0.7499 -1.8863 28 1 8.9514 -1.3117 1.7391 29 1 2.7031 -3.1514 0.1153 30 1 0.2045 -2.2166 -1.3637 31 1 1.7714 -2.5379 -2.1444 32 1 0.8847 -3.8614 -1.3503 33 1 0.5452 -3.7484 1.1814 34 1 1.3933 -2.4924 2.1151 35 1 0.0210 -2.0513 1.0708 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260465731.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = 51.471806 kcal Electronic energy + Delta-G solvation = -15814.083229 eV Core-core repulsion = 13427.087627 eV Total energy + Delta-G solvation = -2386.995603 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.57100 -35.78172 -34.70960 -31.84116 -30.43266 -30.05912 -27.34157 -26.10545 -24.91216 -22.28812 -21.98508 -19.58954 -18.39610 -16.52700 -15.98745 -15.15722 -14.83206 -14.68560 -13.53123 -13.47162 -13.25255 -13.03902 -12.81717 -12.36800 -12.25848 -12.20043 -12.04099 -11.73388 -11.42523 -11.32557 -11.09986 -10.84177 -10.50550 -10.14863 -9.55290 -9.35421 -8.98536 -8.85579 -8.61999 -7.29989 -6.10542 -4.10648 2.78758 3.22383 3.29881 3.30528 3.34472 3.93355 4.35019 4.67438 4.95546 4.96695 5.10159 5.16207 5.22098 5.43020 5.55042 5.67074 5.69091 5.71891 5.83377 5.89762 6.09050 6.12298 6.17928 6.30812 6.49248 6.56499 6.66625 6.86661 7.03055 7.38664 7.62751 7.70632 7.94643 8.48469 8.86986 8.96279 9.49025 11.02118 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.033946 B = 0.009563 C = 0.008421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.645404 B = 2927.136612 C = 3324.060821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.170 3.830 3 N -0.496 5.496 4 C -0.030 4.030 5 C 0.034 3.966 6 C 0.080 3.920 7 H 0.029 0.971 8 C -0.141 4.141 9 C -0.507 4.507 10 H 0.083 0.917 11 C 0.072 3.928 12 N -0.896 5.896 13 Si 0.887 3.113 14 H -0.278 1.278 15 H -0.296 1.296 16 H -0.270 1.270 17 N -0.454 5.454 18 C 0.124 3.876 19 C -0.164 4.164 20 C -0.167 4.167 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.168 0.832 25 H 0.043 0.957 26 H 0.025 0.975 27 H 0.058 0.942 28 H 0.265 0.735 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.206 -5.707 -4.652 16.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.090 4.090 3 N -0.216 5.216 4 C -0.176 4.176 5 C -0.080 4.080 6 C 0.060 3.940 7 H 0.046 0.954 8 C -0.198 4.198 9 C -0.545 4.545 10 H 0.101 0.899 11 C -0.130 4.130 12 N -0.533 5.533 13 Si 0.717 3.283 14 H -0.205 1.205 15 H -0.224 1.224 16 H -0.195 1.195 17 N -0.140 5.140 18 C 0.021 3.979 19 C -0.222 4.222 20 C -0.225 4.225 21 H 0.089 0.911 22 H 0.098 0.902 23 H 0.089 0.911 24 H 0.185 0.815 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.349 -5.033 -4.571 15.878 hybrid contribution 0.789 -1.748 -0.366 1.952 sum -13.560 -6.781 -4.937 15.944 Atomic orbital electron populations 1.20239 0.86400 1.02805 1.02683 1.22800 0.94900 0.81973 1.09336 1.70115 1.02824 1.28457 1.20204 1.21965 0.93498 0.92804 1.09346 1.21724 0.84324 0.96066 1.05876 1.17746 0.88814 0.93867 0.93584 0.95353 1.22137 0.98703 1.01050 0.97941 1.20927 0.94919 1.07717 1.30977 0.89929 1.24962 0.95955 0.97182 0.94899 1.69875 1.04397 1.38839 1.40224 0.86872 0.77890 0.84680 0.78832 1.20470 1.22396 1.19514 1.45361 1.06554 1.06230 1.55854 1.21320 0.98888 0.81471 0.96230 1.22258 1.01038 1.02168 0.96721 1.22271 0.99588 1.02531 0.98066 0.91062 0.90227 0.91126 0.81464 0.93840 0.95580 0.92294 0.92519 0.88173 0.91592 0.91761 0.90984 0.90970 0.91589 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 8.68 36.01 0.31 -0.48 16 2 C 0.17 3.09 7.45 -155.41 -1.16 1.93 16 3 N -0.50 -10.65 11.25 -10.81 -0.12 -10.77 16 4 C -0.03 -0.69 10.79 -17.81 -0.19 -0.88 16 5 C 0.03 0.74 5.87 -81.60 -0.48 0.27 16 6 C 0.08 1.88 2.06 -92.92 -0.19 1.69 16 7 H 0.03 0.67 6.00 -51.93 -0.31 0.36 16 8 C -0.14 -3.05 8.65 37.16 0.32 -2.73 16 9 C -0.51 -14.08 8.84 -34.44 -0.30 -14.38 16 10 H 0.08 2.51 7.09 -52.49 -0.37 2.13 16 11 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 12 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 13 Si 0.89 21.45 24.37 -169.99 -4.14 17.30 16 14 H -0.28 -6.55 6.87 56.52 0.39 -6.17 16 15 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.27 -6.17 6.53 56.52 0.37 -5.80 16 17 N -0.45 -8.35 2.62 -102.32 -0.27 -8.61 16 18 C 0.12 1.78 3.39 -67.93 -0.23 1.55 16 19 C -0.16 -1.86 9.22 37.16 0.34 -1.52 16 20 C -0.17 -1.94 9.09 37.16 0.34 -1.60 16 21 H 0.07 0.82 7.98 -51.93 -0.41 0.40 16 22 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.07 0.72 4.35 -51.93 -0.23 0.50 16 24 H 0.17 3.89 7.67 -52.48 -0.40 3.49 16 25 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.10 1.54 6.69 -51.93 -0.35 1.19 16 30 H 0.07 0.67 5.62 -51.93 -0.29 0.37 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.72 5.21 -51.93 -0.27 0.45 16 LS Contribution 271.37 15.07 4.09 4.09 Total: -1.00 -31.72 271.37 -5.95 -37.68 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.95 Total: 0.82 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -1.34 Total: -14.22 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.38 Total: -45.67 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.14 Total: 17.30 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.72 -5.95 -37.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465731.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.148 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds