Wall clock time and date at job start Mon Mar 30 2020 02:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99923 * 2 1 4 4 H 1.48491 * 109.47512 * 239.99977 * 3 2 1 5 5 H 1.48507 * 109.46857 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46839 * 119.99705 * 3 2 1 7 7 C 1.37879 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00026 * 185.64725 * 7 2 1 9 9 C 1.50701 * 119.99782 * 5.63768 * 7 2 1 10 10 N 1.46492 * 109.52410 * 303.62877 * 9 7 2 11 11 C 1.34429 * 126.82427 * 285.43532 * 10 9 7 12 12 N 1.30833 * 108.07654 * 179.73853 * 11 10 9 13 13 C 1.33241 * 109.83147 * 359.97438 * 12 11 10 14 14 N 1.30705 * 108.94426 * 0.02562 * 13 12 11 15 15 C 1.53120 * 109.57047 * 63.78877 * 9 7 2 16 16 C 1.53049 * 109.27474 * 177.58947 * 15 9 7 17 17 N 1.46849 * 109.51972 * 300.81963 * 16 15 9 18 18 C 1.46848 * 111.19966 * 61.74582 * 17 16 15 19 19 C 1.53034 * 109.52139 * 298.25316 * 18 17 16 20 20 H 0.96999 * 120.00450 * 359.97438 * 1 2 3 21 21 H 1.08001 * 125.96395 * 359.69541 * 11 10 9 22 22 H 1.08001 * 125.52471 * 180.02562 * 13 12 11 23 23 H 1.08995 * 109.50323 * 297.52714 * 15 9 7 24 24 H 1.08993 * 109.50671 * 57.65298 * 15 9 7 25 25 H 1.08996 * 109.45552 * 180.80453 * 16 15 9 26 26 H 1.08991 * 109.45098 * 60.82799 * 16 15 9 27 27 H 1.00900 * 110.99722 * 297.64286 * 17 16 15 28 28 H 1.08998 * 109.45924 * 178.23687 * 18 17 16 29 29 H 1.09000 * 109.45237 * 58.26414 * 18 17 16 30 30 H 1.09006 * 109.50319 * 299.24198 * 19 18 17 31 31 H 1.08997 * 109.50584 * 179.11746 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0806 -1.1963 0.0915 9 6 1.2566 -2.4959 -0.1293 10 7 0.2552 -2.5926 0.9355 11 6 0.4831 -2.8514 2.2348 12 7 -0.6676 -2.8472 2.8575 13 6 -1.6484 -2.5902 1.9930 14 7 -1.1332 -2.4271 0.8029 15 6 0.5616 -2.5555 -1.4924 16 6 -0.1458 -3.9046 -1.6403 17 7 0.8371 -4.9894 -1.5241 18 6 1.4836 -4.9812 -0.2056 19 6 2.2396 -3.6644 -0.0149 20 1 -0.4851 0.8400 0.0004 21 1 1.4476 -3.0319 2.6859 22 1 -2.6988 -2.5270 2.2363 23 1 -0.1705 -1.7511 -1.5631 24 1 1.3026 -2.4445 -2.2839 25 1 -0.6297 -3.9558 -2.6156 26 1 -0.8961 -4.0089 -0.8567 27 1 1.5221 -4.9373 -2.2632 28 1 2.1831 -5.8145 -0.1390 29 1 0.7254 -5.0805 0.5711 30 1 3.0071 -3.5708 -0.7833 31 1 2.7063 -3.6520 0.9700 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260494979.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:51 Heat of formation + Delta-G solvation = 91.662055 kcal Electronic energy + Delta-G solvation = -16230.277208 eV Core-core repulsion = 13741.484042 eV Total energy + Delta-G solvation = -2488.793166 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.80086 -37.99333 -33.84302 -31.66279 -30.48692 -29.49887 -28.92356 -25.58117 -22.62874 -22.35235 -21.22684 -20.21611 -18.97502 -17.10618 -16.08425 -14.93533 -14.50628 -14.06538 -13.90242 -13.63899 -13.27636 -12.94385 -12.47475 -12.20273 -12.05707 -11.60748 -11.07617 -10.94158 -10.87600 -10.61655 -10.43562 -10.11409 -9.94663 -9.37625 -8.91867 -8.65195 -8.32690 -8.18728 -7.72334 -6.26149 -4.51551 3.10559 3.15954 3.20609 3.22477 3.85704 4.15611 4.21917 4.87382 5.04553 5.43653 5.46806 5.64867 5.74909 5.95130 6.03626 6.10918 6.30016 6.35915 6.45067 6.45777 6.70351 6.83917 6.98547 7.28957 7.50937 7.63422 7.77866 7.82045 7.85521 7.91881 8.27477 8.59916 9.20422 9.45904 10.68197 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.025836 B = 0.014555 C = 0.011614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.482550 B = 1923.293176 C = 2410.326041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.079 3.921 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.069 0.931 9 C 0.300 3.700 10 N -0.293 5.293 11 C 0.219 3.781 12 N -0.576 5.576 13 C 0.137 3.863 14 N -0.271 5.271 15 C -0.134 4.134 16 C 0.049 3.951 17 N -0.689 5.689 18 C 0.056 3.944 19 C -0.155 4.155 20 H 0.267 0.733 21 H 0.190 0.810 22 H 0.190 0.810 23 H 0.098 0.902 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.331 0.669 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.395 -5.087 -1.458 5.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.132 4.132 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.589 4.589 8 H 0.087 0.913 9 C 0.221 3.779 10 N -0.083 5.083 11 C -0.077 4.077 12 N -0.306 5.306 13 C -0.165 4.165 14 N -0.100 5.100 15 C -0.174 4.174 16 C -0.080 4.080 17 N -0.317 5.317 18 C -0.074 4.074 19 C -0.195 4.195 20 H 0.077 0.923 21 H 0.207 0.793 22 H 0.206 0.794 23 H 0.116 0.884 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.147 0.853 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.316 -5.358 -1.666 5.763 hybrid contribution 1.351 2.040 0.113 2.449 sum 2.667 -3.318 -1.553 4.531 Atomic orbital electron populations 1.70081 1.05576 1.27351 1.43378 1.25135 0.94973 0.99604 0.93445 0.86594 0.79721 0.82538 0.78892 1.19836 1.21072 1.20020 1.21177 0.93487 0.89242 1.54982 0.91259 1.18516 0.82677 0.93330 0.83411 1.51442 1.04610 1.44378 1.07878 1.25199 0.98283 1.00032 0.84181 1.70248 0.98075 1.27310 1.35006 1.25441 0.99523 1.03532 0.88028 1.77857 0.89515 1.20314 1.22323 1.22215 1.00594 0.98475 0.96129 1.22199 0.95111 0.89255 1.01471 1.60779 1.19217 1.47707 1.04006 1.22002 0.97324 0.96054 0.92021 1.22614 0.98851 0.95762 1.02315 0.92332 0.79318 0.79374 0.88391 0.93005 0.92344 0.90218 0.85278 0.91744 0.91635 0.90873 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.18 10.10 55.43 0.56 -21.62 16 2 C 0.08 2.00 5.21 -17.82 -0.09 1.91 16 3 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.55 -13.47 8.13 -34.44 -0.28 -13.75 16 8 H 0.07 1.66 7.75 -52.49 -0.41 1.26 16 9 C 0.30 6.60 0.45 -132.85 -0.06 6.54 16 10 N -0.29 -6.69 1.76 -50.85 -0.09 -6.78 16 11 C 0.22 4.82 11.40 -90.65 -1.03 3.79 16 12 N -0.58 -13.01 11.19 -15.83 -0.18 -13.19 16 13 C 0.14 3.04 13.03 -91.82 -1.20 1.84 16 14 N -0.27 -6.43 9.10 29.29 0.27 -6.16 16 15 C -0.13 -2.89 4.36 -26.64 -0.12 -3.00 16 16 C 0.05 0.94 6.36 -3.83 -0.02 0.91 16 17 N -0.69 -11.75 6.87 -113.82 -0.78 -12.53 16 18 C 0.06 0.95 6.40 -3.83 -0.02 0.92 16 19 C -0.15 -2.82 4.56 -26.65 -0.12 -2.94 16 20 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 21 H 0.19 3.56 7.58 -52.49 -0.40 3.16 16 22 H 0.19 3.49 8.06 -52.49 -0.42 3.07 16 23 H 0.10 2.45 6.54 -51.93 -0.34 2.11 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.08 1.72 6.34 -51.93 -0.33 1.39 16 27 H 0.33 5.05 8.86 -39.29 -0.35 4.70 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.25 7.35 -51.93 -0.38 0.86 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.09 7.36 -51.93 -0.38 0.71 16 LS Contribution 250.51 15.07 3.78 3.78 Total: -1.00 -27.90 250.51 -8.25 -36.16 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -3.83 Total: 9.15 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.95 Total: -3.79 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.22 Total: -60.28 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.90 -8.25 -36.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260494979.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.817 kcal (2) G-P(sol) polarization free energy of solvation -27.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds