Wall clock time and date at job start Mon Mar 30 2020 02:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48505 * 109.46901 * 264.92031 * 3 2 1 5 5 H 1.48501 * 109.46983 * 24.92142 * 3 2 1 6 6 H 1.48499 * 109.46965 * 144.92241 * 3 2 1 7 7 C 1.37879 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99736 * 359.64691 * 7 2 1 9 9 C 1.50694 * 120.00161 * 179.65108 * 7 2 1 10 10 H 1.09000 * 110.05813 * 336.66726 * 9 7 2 11 11 C 1.54372 * 110.07263 * 98.12737 * 9 7 2 12 12 C 1.54892 * 104.21751 * 142.84800 * 11 9 7 13 13 C 1.54892 * 102.74925 * 322.07737 * 12 11 9 14 14 C 1.53878 * 110.03056 * 215.25496 * 9 7 2 15 15 H 1.09001 * 110.03418 * 0.04551 * 14 9 7 16 16 N 1.46502 * 110.03377 * 121.43501 * 14 9 7 17 17 C 1.36258 * 125.92527 * 84.30183 * 16 14 9 18 18 C 1.35880 * 105.96305 * 180.02562 * 17 16 14 19 19 N 1.40426 * 126.79062 * 179.97438 * 18 17 16 20 20 N 1.34018 * 106.42241 * 0.02562 * 18 17 16 21 21 N 1.28593 * 109.07372 * 359.97438 * 20 18 17 22 22 H 0.96996 * 120.00570 * 359.97438 * 1 2 3 23 23 H 1.09006 * 110.46017 * 24.17223 * 11 9 7 24 24 H 1.08999 * 110.60700 * 261.60083 * 11 9 7 25 25 H 1.09004 * 110.75594 * 203.76531 * 12 11 9 26 26 H 1.09000 * 110.91517 * 80.46127 * 12 11 9 27 27 H 1.09005 * 110.48721 * 279.26621 * 13 12 11 28 28 H 1.08996 * 110.60086 * 156.67436 * 13 12 11 29 29 H 1.08001 * 127.01840 * 0.04644 * 17 16 14 30 30 H 0.96998 * 120.00396 * 179.97438 * 19 18 17 31 31 H 0.97002 * 119.99796 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6039 1.9845 -1.3946 5 1 1.3969 2.6813 0.5900 6 1 3.4889 1.4736 0.8046 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 0.0048 9 6 3.5115 -1.1940 -0.0085 10 1 3.8831 -0.2549 -0.4184 11 6 4.0489 -1.3953 1.4246 12 6 5.3025 -2.2859 1.2392 13 6 4.8694 -3.2553 0.1115 14 6 4.0342 -2.3767 -0.8427 15 1 3.1978 -2.9502 -1.2424 16 7 4.8747 -1.8860 -1.9376 17 6 6.2002 -1.5819 -1.8534 18 6 6.5684 -1.1688 -3.0944 19 7 7.8469 -0.7494 -3.4964 20 7 5.4698 -1.2395 -3.8588 21 7 4.4886 -1.6664 -3.1457 22 1 -0.4851 0.8400 0.0004 23 1 3.3077 -1.9035 2.0416 24 1 4.3228 -0.4387 1.8695 25 1 5.5261 -2.8336 2.1548 26 1 6.1605 -1.6900 0.9279 27 1 4.2607 -4.0639 0.5164 28 1 5.7412 -3.6571 -0.4047 29 1 6.8298 -1.6548 -0.9790 30 1 8.0009 -0.4735 -4.4135 31 1 8.5763 -0.7363 -2.8570 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260570939.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:27 Heat of formation + Delta-G solvation = 67.235835 kcal Electronic energy + Delta-G solvation = -15436.181699 eV Core-core repulsion = 12946.329332 eV Total energy + Delta-G solvation = -2489.852366 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.98078 -39.35824 -35.72874 -34.74664 -33.54645 -30.97861 -30.00596 -28.98426 -25.99602 -23.61413 -22.80275 -21.51354 -20.87569 -19.41830 -18.16674 -17.19785 -17.09508 -16.73067 -16.45934 -15.46592 -15.38457 -14.84265 -14.71081 -14.02322 -13.25918 -13.05714 -12.86965 -12.68233 -12.28425 -12.09888 -11.92532 -11.77386 -11.62800 -11.59977 -11.52767 -11.15660 -10.82144 -10.60523 -8.72711 -8.36079 -6.38000 0.81485 1.23187 1.27920 1.33887 1.60484 1.86526 2.25602 2.82279 2.99376 3.61167 3.74850 3.91050 4.09761 4.24838 4.43545 4.51528 4.62503 4.70250 4.87245 4.93907 5.00730 5.08915 5.20398 5.24978 5.44671 5.54649 5.65772 5.90938 6.22791 6.52714 6.67083 7.02957 7.26117 7.80091 8.80421 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.026794 B = 0.010926 C = 0.009374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.764504 B = 2562.000562 C = 2986.371017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.019 3.981 3 Si 0.929 3.071 4 H -0.291 1.291 5 H -0.282 1.282 6 H -0.238 1.238 7 C -0.509 4.509 8 H 0.046 0.954 9 C 0.008 3.992 10 H 0.025 0.975 11 C -0.120 4.120 12 C -0.115 4.115 13 C -0.117 4.117 14 C 0.140 3.860 15 H 0.089 0.911 16 N -0.255 5.255 17 C -0.115 4.115 18 C 0.237 3.763 19 N -0.834 5.834 20 N -0.358 5.358 21 N -0.118 5.118 22 H 0.266 0.734 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.220 0.780 30 H 0.409 0.591 31 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.303 -3.660 2.241 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.179 4.179 3 Si 0.754 3.246 4 H -0.218 1.218 5 H -0.208 1.208 6 H -0.161 1.161 7 C -0.547 4.547 8 H 0.064 0.936 9 C -0.013 4.013 10 H 0.043 0.957 11 C -0.158 4.158 12 C -0.152 4.152 13 C -0.155 4.155 14 C 0.039 3.961 15 H 0.107 0.893 16 N -0.053 5.053 17 C -0.270 4.270 18 C 0.001 3.999 19 N -0.388 5.388 20 N -0.228 5.228 21 N -0.096 5.096 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.115 0.885 26 H 0.098 0.902 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.236 0.764 30 H 0.238 0.762 31 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 16.835 -3.625 1.287 17.268 hybrid contribution 0.434 1.136 0.286 1.249 sum 17.269 -2.489 1.573 17.518 Atomic orbital electron populations 1.70000 1.07897 1.27926 1.52444 1.25772 0.95345 1.02348 0.94425 0.86027 0.80100 0.80169 0.78296 1.21787 1.20790 1.16120 1.21219 0.90529 0.93266 1.49675 0.93564 1.20084 0.94420 0.93011 0.93746 0.95717 1.22625 0.97277 0.99635 0.96297 1.22589 0.96859 0.96893 0.98869 1.22741 0.99691 0.97604 0.95469 1.22881 0.92063 0.97228 0.83955 0.89287 1.47726 1.08488 1.40366 1.08735 1.23212 0.86651 1.15796 1.01343 1.19221 0.89383 1.00771 0.90529 1.41080 1.04129 1.78063 1.15569 1.74905 0.97424 1.23201 1.27286 1.78211 1.21599 1.18929 0.90872 0.92523 0.91764 0.92684 0.88471 0.90247 0.88239 0.88840 0.76371 0.76176 0.74554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.94 13.96 21.45 0.30 -58.64 16 2 C 0.02 1.11 5.47 84.66 0.46 1.57 16 3 Si 0.93 45.48 26.89 68.60 1.84 47.33 16 4 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 5 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.24 -10.43 6.76 99.48 0.67 -9.76 16 7 C -0.51 -27.93 8.54 25.60 0.22 -27.71 16 8 H 0.05 2.77 8.00 -2.91 -0.02 2.75 16 9 C 0.01 0.33 2.28 -10.78 -0.02 0.31 16 10 H 0.02 1.15 5.26 -2.39 -0.01 1.14 16 11 C -0.12 -4.13 6.36 31.71 0.20 -3.93 16 12 C -0.11 -2.66 6.70 31.89 0.21 -2.45 16 13 C -0.12 -2.94 5.94 31.67 0.19 -2.75 16 14 C 0.14 5.19 3.58 45.72 0.16 5.36 16 15 H 0.09 3.73 7.62 -2.39 -0.02 3.71 16 16 N -0.25 -9.64 3.18 -322.50 -1.03 -10.67 16 17 C -0.12 -3.43 10.23 83.46 0.85 -2.58 16 18 C 0.24 7.50 8.49 131.32 1.12 8.62 16 19 N -0.83 -17.08 9.18 -55.58 -0.51 -17.59 16 20 N -0.36 -14.65 12.40 -55.60 -0.69 -15.34 16 21 N -0.12 -5.29 13.15 37.02 0.49 -4.80 16 22 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 23 H 0.06 2.32 7.85 -2.38 -0.02 2.31 16 24 H 0.05 1.87 7.92 -2.39 -0.02 1.85 16 25 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.08 1.56 6.75 -2.39 -0.02 1.54 16 27 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.09 1.94 7.36 -2.39 -0.02 1.93 16 29 H 0.22 4.41 6.51 -2.91 -0.02 4.39 16 30 H 0.41 7.51 8.96 -92.71 -0.83 6.68 16 31 H 0.42 5.50 8.96 -92.71 -0.83 4.67 16 Total: -1.00 -73.40 257.11 3.27 -70.13 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -0.53 Total: 13.15 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 3.39 Total: -23.57 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -1.44 Total: -107.04 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.84 Total: 47.33 kcal Total: -73.40 3.27 -70.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260570939.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.368 kcal (2) G-P(sol) polarization free energy of solvation -73.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds