Wall clock time and date at job start Mon Mar 30 2020 03:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35966 * 125.47571 * 2 1 4 4 C 1.39303 * 108.09144 * 179.73384 * 3 2 1 5 5 C 1.50702 * 126.47752 * 180.26208 * 4 3 2 6 6 C 1.52991 * 109.47159 * 265.19031 * 5 4 3 7 7 N 1.46901 * 109.47192 * 179.97438 * 6 5 4 8 8 C 1.46901 * 111.00225 * 66.04059 * 7 6 5 9 9 C 1.46896 * 111.00255 * 189.99956 * 7 6 5 10 10 C 1.39739 * 107.05444 * 0.41804 * 4 3 2 11 11 C 1.39949 * 126.35969 * 179.84210 * 10 4 3 12 12 H 1.07999 * 119.99958 * 341.24875 * 11 10 4 13 13 C 1.40067 * 120.00254 * 161.52693 * 11 10 4 14 14 N 1.30864 * 119.99987 * 168.76451 * 13 11 10 15 15 Si 1.86799 * 119.99776 * 348.75676 * 13 11 10 16 16 H 1.48502 * 109.46877 * 86.82666 * 15 13 11 17 17 H 1.48504 * 109.47181 * 206.82497 * 15 13 11 18 18 H 1.48500 * 109.47506 * 326.82819 * 15 13 11 19 19 N 1.36171 * 125.47351 * 179.97438 * 2 1 3 20 20 H 0.96998 * 125.74144 * 359.97438 * 19 2 1 21 21 H 1.08996 * 109.47059 * 269.97770 * 1 2 3 22 22 H 1.09002 * 109.46993 * 29.98083 * 1 2 3 23 23 H 1.09005 * 109.46982 * 149.97384 * 1 2 3 24 24 H 1.08000 * 125.95433 * 0.03486 * 3 2 1 25 25 H 1.09002 * 109.46927 * 25.19265 * 5 4 3 26 26 H 1.09000 * 109.47119 * 145.18638 * 5 4 3 27 27 H 1.09000 * 109.47021 * 299.99569 * 6 5 4 28 28 H 1.09000 * 109.47426 * 59.99795 * 6 5 4 29 29 H 1.09005 * 109.46745 * 60.00224 * 8 7 6 30 30 H 1.09001 * 109.47063 * 180.02562 * 8 7 6 31 31 H 1.08998 * 109.47288 * 300.00200 * 8 7 6 32 32 H 1.09000 * 109.47376 * 59.99906 * 9 7 6 33 33 H 1.09001 * 109.47599 * 179.97438 * 9 7 6 34 34 H 1.08997 * 109.47443 * 300.00133 * 9 7 6 35 35 H 0.96998 * 119.99312 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2961 1.1073 0.0000 4 6 3.6255 0.6911 0.0062 5 6 4.8425 1.5798 0.0139 6 6 5.3331 1.7853 -1.4206 7 7 6.5190 2.6521 -1.4131 8 6 7.6500 1.9912 -0.7482 9 6 6.8780 3.0650 -2.7764 10 6 3.6174 -0.7063 0.0001 11 6 4.7397 -1.5424 0.0002 12 1 5.7028 -1.1536 -0.2958 13 6 4.6127 -2.8851 0.3784 14 7 5.5998 -3.7192 0.1719 15 14 3.0346 -3.4850 1.1776 16 1 2.0647 -3.8782 0.1240 17 1 3.3309 -4.6572 2.0399 18 1 2.4534 -2.3968 2.0041 19 7 2.2972 -1.1090 0.0005 20 1 1.9849 -2.0273 0.0013 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5143 24 1 1.9521 2.1310 0.0005 25 1 4.5852 2.5443 0.4516 26 1 5.6305 1.1117 0.6039 27 1 5.5904 0.8207 -1.8582 28 1 4.5451 2.2534 -2.0106 29 1 7.8941 1.0696 -1.2766 30 1 8.5146 2.6550 -0.7563 31 1 7.3805 1.7589 0.2821 32 1 6.0472 3.6133 -3.2206 33 1 7.7588 3.7062 -2.7418 34 1 7.0940 2.1824 -3.3783 35 1 5.5119 -4.6489 0.4342 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260813500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:10 Heat of formation + Delta-G solvation = 13.128335 kcal Electronic energy + Delta-G solvation = -15313.446943 eV Core-core repulsion = 12924.788643 eV Total energy + Delta-G solvation = -2388.658300 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.40601 -38.39873 -35.42430 -33.71538 -32.29669 -29.80082 -29.14450 -28.42848 -25.64914 -24.14060 -22.06274 -21.14595 -19.91636 -19.29284 -17.48064 -16.42403 -16.27173 -15.87446 -15.58782 -15.10099 -14.98756 -14.30757 -14.24320 -13.59252 -13.46350 -13.40461 -13.25352 -12.85465 -12.72869 -12.62868 -12.50439 -12.36366 -12.13182 -11.95125 -11.81496 -11.36690 -11.19647 -9.31570 -9.16139 -8.84352 -8.80240 -6.19670 0.95069 1.13929 1.24212 1.65287 1.95736 2.29676 2.76571 3.14106 3.28302 4.21818 4.32739 4.41532 4.49124 4.55783 4.60611 4.70807 4.81157 4.87272 4.89536 4.91591 4.99157 5.01263 5.12302 5.14812 5.18475 5.30344 5.42200 5.59082 5.89110 6.07369 6.13507 6.20426 6.35103 6.47225 6.93950 7.00136 7.27108 8.27788 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.023386 B = 0.010081 C = 0.007422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.009593 B = 2776.813252 C = 3771.911613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.087 4.087 3 C -0.165 4.165 4 C -0.300 4.300 5 C -0.001 4.001 6 C 0.075 3.925 7 N -0.554 5.554 8 C 0.025 3.975 9 C 0.024 3.976 10 C 0.182 3.818 11 C -0.464 4.464 12 H 0.065 0.935 13 C 0.035 3.965 14 N -0.865 5.865 15 Si 0.935 3.065 16 H -0.249 1.249 17 H -0.267 1.267 18 H -0.254 1.254 19 N -0.596 5.596 20 H 0.388 0.612 21 H 0.064 0.936 22 H 0.088 0.912 23 H 0.056 0.944 24 H 0.134 0.866 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.003 0.997 28 H 0.070 0.930 29 H 0.009 0.991 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.015 0.985 35 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.257 7.092 -1.588 8.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.194 4.194 3 C -0.190 4.190 4 C -0.305 4.305 5 C -0.040 4.040 6 C -0.052 4.052 7 N -0.278 5.278 8 C -0.124 4.124 9 C -0.124 4.124 10 C 0.071 3.929 11 C -0.499 4.499 12 H 0.084 0.916 13 C -0.177 4.177 14 N -0.495 5.495 15 Si 0.759 3.241 16 H -0.175 1.175 17 H -0.192 1.192 18 H -0.178 1.178 19 N -0.204 5.204 20 H 0.228 0.772 21 H 0.083 0.917 22 H 0.107 0.893 23 H 0.075 0.925 24 H 0.151 0.849 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.021 0.979 28 H 0.089 0.911 29 H 0.027 0.973 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.034 0.966 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.321 7.200 -1.325 8.501 hybrid contribution 0.030 -1.988 -0.210 1.999 sum -4.290 5.213 -1.535 6.923 Atomic orbital electron populations 1.20152 0.86935 1.02981 1.02040 1.20619 0.94104 0.85936 1.18714 1.20295 0.92156 0.96739 1.09774 1.19574 0.94734 0.91235 1.24974 1.19345 0.93424 0.96567 0.94631 1.22007 0.91949 0.93078 0.98202 1.62124 1.05246 1.41439 1.18963 1.22408 0.93815 0.96902 0.99243 1.22443 1.02482 0.99489 0.88009 1.18118 0.82138 0.93408 0.99233 1.18412 0.94541 0.93869 1.43124 0.91639 1.26655 1.00543 0.96272 0.94219 1.69677 1.34330 1.05721 1.39775 0.86034 0.78972 0.78850 0.80264 1.17455 1.19247 1.17790 1.42688 1.06459 1.06967 1.64315 0.77193 0.91692 0.89291 0.92465 0.84856 0.91782 0.94638 0.97880 0.91148 0.97252 0.89319 0.92031 0.90695 0.89592 0.96649 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.89 10.41 71.24 0.74 -1.15 16 2 C -0.09 -3.61 7.15 41.36 0.30 -3.32 16 3 C -0.16 -7.01 10.64 22.00 0.23 -6.78 16 4 C -0.30 -14.30 5.50 -19.24 -0.11 -14.41 16 5 C 0.00 -0.06 5.40 29.85 0.16 0.10 16 6 C 0.08 2.98 4.94 86.30 0.43 3.40 16 7 N -0.55 -18.53 5.02 -948.87 -4.76 -23.30 16 8 C 0.02 0.80 9.32 127.69 1.19 1.99 16 9 C 0.02 0.64 9.57 127.69 1.22 1.86 16 10 C 0.18 9.52 6.20 38.95 0.24 9.76 16 11 C -0.46 -26.41 9.59 23.13 0.22 -26.18 16 12 H 0.07 4.06 8.04 -2.91 -0.02 4.03 16 13 C 0.03 1.88 5.52 85.28 0.47 2.35 16 14 N -0.86 -48.27 13.93 21.86 0.30 -47.96 16 15 Si 0.93 40.65 24.68 68.60 1.69 42.34 16 16 H -0.25 -9.81 6.81 99.48 0.68 -9.14 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.25 -11.28 6.75 99.48 0.67 -10.61 16 19 N -0.60 -27.85 4.66 -175.02 -0.81 -28.66 16 20 H 0.39 17.07 4.33 -92.71 -0.40 16.67 16 21 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 25 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.03 1.62 6.50 -2.39 -0.02 1.61 16 27 H 0.00 0.13 8.12 -2.39 -0.02 0.11 16 28 H 0.07 2.66 8.06 -2.39 -0.02 2.64 16 29 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.09 2.29 8.12 -2.39 -0.02 2.27 16 31 H 0.06 2.13 6.47 -2.39 -0.02 2.11 16 32 H 0.07 1.84 8.12 -2.39 -0.02 1.82 16 33 H 0.09 1.88 8.12 -2.39 -0.02 1.86 16 34 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.29 14.58 8.30 -92.71 -0.77 13.81 16 Total: -1.00 -61.61 284.31 2.12 -59.49 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.59 Total: 30.46 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 5.10 Total: -32.38 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -5.27 Total: -99.92 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.69 Total: 42.34 kcal Total: -61.61 2.12 -59.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260813500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.621 kcal (2) G-P(sol) polarization free energy of solvation -61.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds