Wall clock time and date at job start Mon Mar 30 2020 02:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38577 * 120.00201 * 2 1 4 4 N 1.31213 * 126.46971 * 354.85333 * 3 2 1 5 5 N 1.28530 * 109.85769 * 179.72777 * 4 3 2 6 6 C 1.30288 * 110.05398 * 0.45380 * 5 4 3 7 7 C 1.50704 * 126.35006 * 179.81979 * 6 5 4 8 8 C 1.50698 * 109.47188 * 269.68978 * 7 6 5 9 9 H 1.08007 * 120.00121 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00179 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00113 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00184 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47106 * 90.00104 * 12 10 8 14 14 H 1.48505 * 109.47072 * 210.00135 * 12 10 8 15 15 H 1.48496 * 109.47330 * 329.99985 * 12 10 8 16 16 N 1.36452 * 126.47172 * 174.85375 * 3 2 1 17 17 C 1.46492 * 127.13848 * 359.97438 * 16 3 2 18 18 C 1.52999 * 117.50122 * 312.77582 * 17 16 3 19 19 C 1.53005 * 117.49973 * 244.11277 * 17 16 3 20 20 H 1.09002 * 109.47273 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46939 * 299.99585 * 1 2 3 22 22 H 1.08997 * 109.47648 * 59.99987 * 1 2 3 23 23 H 0.96998 * 119.99528 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47280 * 149.69220 * 7 6 5 25 25 H 1.09001 * 109.46732 * 29.68976 * 7 6 5 26 26 H 0.97001 * 120.00371 * 179.97438 * 11 10 8 27 27 H 1.09005 * 115.55293 * 98.44458 * 17 16 3 28 28 H 1.09001 * 117.49849 * 359.97438 * 18 17 16 29 29 H 1.09000 * 117.49937 * 145.01925 * 18 17 16 30 30 H 1.09001 * 117.49721 * 214.97770 * 19 17 16 31 31 H 1.08994 * 117.49707 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1579 1.2001 0.0000 4 7 1.6378 2.4010 -0.0947 5 7 2.5702 3.2849 -0.0560 6 6 3.7314 2.7047 0.0550 7 6 5.0703 3.3927 0.1284 8 6 5.6269 3.5583 -1.2622 9 1 5.0673 3.2007 -2.1140 10 6 6.8504 4.1663 -1.4471 11 7 7.5321 4.6013 -0.4099 12 14 7.5407 4.3709 -3.1708 13 1 7.0896 5.6689 -3.7338 14 1 9.0245 4.3440 -3.1162 15 1 7.0569 3.2627 -4.0326 16 7 3.5099 1.3561 0.0984 17 6 4.5154 0.2982 0.2250 18 6 4.2564 -0.8031 1.2551 19 6 5.3338 0.2524 1.5169 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.9499 -0.8401 -0.0004 24 1 5.7559 2.7908 0.7248 25 1 4.9504 4.3724 0.5909 26 1 8.3931 5.0287 -0.5400 27 1 5.0181 0.0143 -0.6996 28 1 3.3381 -0.7402 1.8389 29 1 4.5890 -1.8113 1.0083 30 1 6.3748 -0.0621 1.4423 31 1 5.1244 1.0095 2.2724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261026019.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:31 Heat of formation + Delta-G solvation = 88.590147 kcal Electronic energy + Delta-G solvation = -15125.379687 eV Core-core repulsion = 12636.453313 eV Total energy + Delta-G solvation = -2488.926374 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.68693 -38.51022 -36.87042 -35.40121 -33.56536 -32.16256 -29.05464 -26.99714 -25.63358 -24.35941 -23.47030 -21.65588 -21.31823 -18.88531 -18.49716 -17.44765 -16.98776 -16.67834 -15.98525 -15.74864 -14.77230 -14.68476 -14.36256 -14.00458 -13.57966 -13.02345 -12.86561 -12.69219 -12.56150 -12.39814 -12.12823 -12.06603 -11.77658 -11.68535 -11.20862 -10.95610 -10.67429 -10.61210 -8.73483 -8.21972 -6.36303 1.16302 1.29405 1.39539 1.42496 1.52074 2.11180 2.39543 2.41611 2.60088 3.08298 3.57041 3.69828 3.82397 4.09123 4.30481 4.52022 4.55256 4.58820 4.71128 4.82382 4.92167 4.96254 5.07068 5.13225 5.23323 5.46983 5.66409 5.76065 6.07238 6.37942 6.68859 6.69156 7.31368 8.07503 8.86042 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.032613 B = 0.008350 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.360300 B = 3352.628562 C = 3723.687394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.700 5.700 3 C 0.429 3.571 4 N -0.392 5.392 5 N -0.343 5.343 6 C 0.208 3.792 7 C 0.117 3.883 8 C -0.529 4.529 9 H 0.042 0.958 10 C 0.019 3.981 11 N -0.920 5.920 12 Si 0.964 3.036 13 H -0.277 1.277 14 H -0.271 1.271 15 H -0.269 1.269 16 N -0.476 5.476 17 C 0.028 3.972 18 C -0.134 4.134 19 C -0.165 4.165 20 H 0.121 0.879 21 H 0.045 0.955 22 H 0.041 0.959 23 H 0.420 0.580 24 H 0.039 0.961 25 H 0.019 0.981 26 H 0.270 0.730 27 H 0.135 0.865 28 H 0.102 0.898 29 H 0.154 0.846 30 H 0.129 0.871 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.794 -16.528 2.608 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.348 5.348 3 C 0.071 3.929 4 N -0.240 5.240 5 N -0.179 5.179 6 C -0.062 4.062 7 C 0.077 3.923 8 C -0.568 4.568 9 H 0.060 0.940 10 C -0.181 4.181 11 N -0.559 5.559 12 Si 0.789 3.211 13 H -0.203 1.203 14 H -0.196 1.196 15 H -0.194 1.194 16 N -0.175 5.175 17 C -0.076 4.076 18 C -0.171 4.171 19 C -0.203 4.203 20 H 0.140 0.860 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.258 0.742 24 H 0.057 0.943 25 H 0.037 0.963 26 H 0.079 0.921 27 H 0.153 0.847 28 H 0.120 0.880 29 H 0.172 0.828 30 H 0.147 0.853 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.892 -15.269 2.544 16.944 hybrid contribution 1.527 -0.472 -0.704 1.747 sum -5.364 -15.741 1.840 16.731 Atomic orbital electron populations 1.21594 0.75980 1.04266 1.01034 1.43076 1.06632 1.00576 1.84526 1.21384 0.80308 0.91426 0.99818 1.74260 1.24058 0.95368 1.30275 1.73820 0.96808 1.25568 1.21686 1.25313 0.98525 0.80247 1.02094 1.17456 0.83245 0.93829 0.97723 1.21049 1.03848 1.40044 0.91892 0.94007 1.25725 0.96686 0.94405 1.01251 1.70028 1.14531 1.39744 1.31547 0.85468 0.77744 0.78649 0.79287 1.20285 1.19559 1.19405 1.45648 1.05633 1.07031 1.59202 1.22153 0.95715 0.92259 0.97443 1.23574 1.00426 0.95517 0.97597 1.23324 0.99124 1.01788 0.96049 0.86048 0.93636 0.93990 0.74190 0.94272 0.96268 0.92141 0.84734 0.88002 0.82822 0.85267 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.27 11.06 127.77 1.41 3.68 16 2 N -0.70 -17.76 5.69 -370.17 -2.11 -19.86 16 3 C 0.43 16.45 8.46 260.12 2.20 18.65 16 4 N -0.39 -18.56 11.88 -58.01 -0.69 -19.24 16 5 N -0.34 -18.35 12.18 -49.53 -0.60 -18.95 16 6 C 0.21 10.49 7.25 137.64 1.00 11.49 16 7 C 0.12 6.40 5.35 29.10 0.16 6.55 16 8 C -0.53 -30.64 9.09 25.60 0.23 -30.40 16 9 H 0.04 2.48 7.74 -2.91 -0.02 2.46 16 10 C 0.02 1.07 5.46 84.65 0.46 1.53 16 11 N -0.92 -53.54 13.29 21.45 0.28 -53.25 16 12 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 14 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 N -0.48 -19.07 3.09 -492.48 -1.52 -20.59 16 17 C 0.03 0.83 6.22 44.99 0.28 1.11 16 18 C -0.13 -2.47 9.13 30.62 0.28 -2.19 16 19 C -0.17 -4.30 9.58 30.62 0.29 -4.01 16 20 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.42 7.74 7.55 -92.71 -0.70 7.04 16 24 H 0.04 2.09 7.12 -2.39 -0.02 2.07 16 25 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 27 H 0.14 3.91 8.14 -2.38 -0.02 3.89 16 28 H 0.10 1.89 7.91 -2.39 -0.02 1.87 16 29 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -75.36 272.34 4.14 -71.22 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.44 Total: 8.18 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 6.32 Total: 6.42 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -4.64 Total: -131.90 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -75.36 4.14 -71.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026019.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.811 kcal (2) G-P(sol) polarization free energy of solvation -75.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds