Wall clock time and date at job start Mon Mar 30 2020 02:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47397 * 2 1 4 4 C 1.52999 * 109.47210 * 239.99772 * 2 1 3 5 5 C 1.53000 * 109.47265 * 120.00419 * 2 1 3 6 6 C 1.53001 * 109.47510 * 54.23654 * 5 2 1 7 7 H 1.09003 * 109.46679 * 307.25314 * 6 5 2 8 8 C 1.50699 * 109.47128 * 187.25342 * 6 5 2 9 9 H 1.07996 * 120.00294 * 0.02562 * 8 6 5 10 10 C 1.37876 * 119.99595 * 179.72247 * 8 6 5 11 11 N 1.31519 * 120.00552 * 0.27644 * 10 8 6 12 12 Si 1.86806 * 119.99844 * 180.27616 * 10 8 6 13 13 H 1.48491 * 109.47216 * 60.00087 * 12 10 8 14 14 H 1.48497 * 109.46922 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47027 * 299.99980 * 12 10 8 16 16 C 1.50692 * 109.47040 * 67.24899 * 6 5 2 17 17 C 1.34511 * 125.79140 * 232.42439 * 16 6 5 18 18 C 1.41383 * 106.83985 * 179.89271 * 17 16 6 19 19 C 1.34507 * 106.84236 * 0.37153 * 18 17 16 20 20 O 1.34303 * 108.42106 * 359.77362 * 19 18 17 21 21 H 1.09000 * 109.46911 * 299.99749 * 1 2 3 22 22 H 1.09000 * 109.47363 * 59.99777 * 1 2 3 23 23 H 1.09001 * 109.47239 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47275 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47046 * 300.00417 * 3 2 1 26 26 H 1.09007 * 109.46789 * 59.99909 * 3 2 1 27 27 H 1.08999 * 109.47328 * 312.27635 * 4 2 1 28 28 H 1.09004 * 109.46871 * 72.27169 * 4 2 1 29 29 H 1.08994 * 109.47609 * 192.26978 * 4 2 1 30 30 H 1.09001 * 109.46639 * 294.23716 * 5 2 1 31 31 H 1.09000 * 109.47724 * 174.24221 * 5 2 1 32 32 H 0.96993 * 120.00382 * 180.02562 * 11 10 8 33 33 H 1.08004 * 126.58298 * 0.02812 * 17 16 6 34 34 H 1.08006 * 126.57760 * 180.16820 * 18 17 16 35 35 H 1.08007 * 125.79050 * 179.75181 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.4152 -2.1160 1.3237 7 1 0.3313 -2.0332 1.2441 8 6 1.7748 -2.7578 2.6389 9 1 2.3872 -2.2243 3.3507 10 6 1.3166 -4.0238 2.9362 11 7 0.5703 -4.6734 2.0697 12 14 1.7558 -4.8164 4.5697 13 1 1.2398 -3.9780 5.6813 14 1 1.1454 -6.1681 4.6440 15 1 3.2319 -4.9336 4.6820 16 6 1.9388 -2.9621 0.1920 17 6 1.1893 -3.6492 -0.6885 18 6 2.0844 -4.2947 -1.5724 19 6 3.3274 -3.9701 -1.1741 20 8 3.2332 -3.1627 -0.1049 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.5093 -1.6663 -1.3652 28 1 1.8660 -0.0970 -2.1257 29 1 3.1078 -0.9144 -1.1468 30 1 1.7633 -0.1514 2.1362 31 1 3.1251 -0.8115 1.1992 32 1 0.2476 -5.5639 2.2790 33 1 0.1107 -3.6968 -0.7166 34 1 1.8206 -4.9296 -2.4054 35 1 4.2456 -4.3026 -1.6355 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049716.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:22 Heat of formation + Delta-G solvation = -6.003108 kcal Electronic energy + Delta-G solvation = -16187.138233 eV Core-core repulsion = 13765.357580 eV Total energy + Delta-G solvation = -2421.780653 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.40796 -37.36915 -33.41046 -31.66144 -30.52890 -27.51707 -26.75570 -26.38154 -24.96488 -21.82376 -20.39641 -19.23394 -17.89982 -16.73505 -15.72842 -14.88655 -14.47507 -14.01622 -13.83369 -13.47465 -13.02007 -12.47336 -12.28142 -11.75025 -11.60419 -11.48089 -11.41042 -11.13525 -10.96484 -10.89697 -10.69737 -10.46360 -10.33559 -10.01652 -9.79320 -9.23091 -9.10333 -8.58245 -8.47187 -6.93030 -5.98355 -4.13572 3.09485 3.31392 3.35605 3.38191 4.01356 4.35338 4.42750 5.27656 5.45306 5.47074 5.51384 5.98264 6.06586 6.11612 6.15041 6.20168 6.29454 6.34220 6.38001 6.50384 6.54436 6.71819 6.74917 6.80887 6.96238 7.02484 7.08880 7.16064 7.29414 7.51742 7.56438 7.86294 7.86629 8.23482 8.59607 8.89034 9.52372 11.00474 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.012171 C = 0.009570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.322102 B = 2299.993570 C = 2925.096565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 C -0.137 4.137 4 C -0.157 4.157 5 C -0.098 4.098 6 C 0.110 3.890 7 H 0.065 0.935 8 C -0.527 4.527 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.871 5.871 12 Si 0.892 3.108 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.104 3.896 17 C -0.234 4.234 18 C -0.209 4.209 19 C -0.104 4.104 20 O -0.180 6.180 21 H 0.049 0.951 22 H 0.041 0.959 23 H 0.066 0.934 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.035 0.965 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.262 0.738 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 5.808 -5.389 8.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.194 4.194 4 C -0.214 4.214 5 C -0.135 4.135 6 C 0.091 3.909 7 H 0.083 0.917 8 C -0.564 4.564 9 H 0.080 0.920 10 C -0.137 4.137 11 N -0.506 5.506 12 Si 0.719 3.281 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.202 1.202 16 C 0.053 3.947 17 C -0.253 4.253 18 C -0.228 4.228 19 C -0.171 4.171 20 O -0.076 6.076 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.609 5.750 -5.267 7.962 hybrid contribution 0.147 -1.008 0.651 1.209 sum 1.756 4.742 -4.616 6.847 Atomic orbital electron populations 1.21931 0.95228 1.02422 1.00236 1.20570 0.95404 0.94423 0.96611 1.21873 1.00532 0.96391 1.00643 1.22331 1.01512 1.01761 0.95821 1.21722 0.99855 0.96738 0.95202 1.17738 0.96149 0.87729 0.89251 0.91735 1.21020 1.33596 1.01244 1.00564 0.92039 1.25025 0.94684 0.97152 0.96840 1.70002 1.33483 1.12816 1.34338 0.86659 0.78810 0.78453 0.84157 1.20093 1.21297 1.20242 1.23283 0.78756 0.98268 0.94415 1.21021 0.99532 1.05498 0.99276 1.21563 0.93424 1.05144 1.02694 1.23397 0.98844 1.02116 0.92735 1.83982 1.29756 1.53805 1.40083 0.93157 0.93974 0.91507 0.93246 0.93600 0.93172 0.89895 0.94546 0.93143 0.92469 0.92822 0.92794 0.85427 0.85791 0.80542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.94 37.16 0.30 -2.07 16 2 C -0.07 -1.22 0.80 -154.51 -0.12 -1.35 16 3 C -0.14 -2.03 8.44 37.16 0.31 -1.71 16 4 C -0.16 -2.83 7.09 37.16 0.26 -2.56 16 5 C -0.10 -2.00 3.86 -26.73 -0.10 -2.10 16 6 C 0.11 2.64 1.88 -92.93 -0.17 2.47 16 7 H 0.06 1.63 5.89 -51.93 -0.31 1.32 16 8 C -0.53 -14.23 8.54 -34.44 -0.29 -14.52 16 9 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 10 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 11 N -0.87 -24.56 11.74 55.43 0.65 -23.91 16 12 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 C 0.10 2.49 2.22 -35.63 -0.08 2.41 16 17 C -0.23 -5.44 8.16 -39.70 -0.32 -5.76 16 18 C -0.21 -4.34 10.86 -39.70 -0.43 -4.77 16 19 C -0.10 -2.12 12.09 29.41 0.36 -1.76 16 20 O -0.18 -4.24 9.67 5.70 0.06 -4.19 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 1.24 6.18 -51.93 -0.32 0.92 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 27 H 0.08 1.63 4.12 -51.93 -0.21 1.42 16 28 H 0.04 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.05 0.94 7.34 -51.93 -0.38 0.56 16 30 H 0.06 1.14 8.13 -51.93 -0.42 0.71 16 31 H 0.05 1.13 8.00 -51.93 -0.42 0.72 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.13 3.00 8.06 -52.48 -0.42 2.58 16 34 H 0.12 2.23 8.06 -52.48 -0.42 1.80 16 35 H 0.18 2.84 8.06 -52.48 -0.42 2.41 16 LS Contribution 278.14 15.07 4.19 4.19 Total: -1.00 -28.39 278.14 -5.92 -34.31 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.40 Total: 3.26 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: -0.40 Total: -29.97 kcal Atomic # 7 Polarization: -24.56 SS G_CDS: 0.65 Total: -23.91 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: 0.06 Total: -4.19 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.39 -5.92 -34.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049716.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.306 kcal (2) G-P(sol) polarization free energy of solvation -28.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds