Wall clock time and date at job start Mon Mar 30 2020 02:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32008 * 119.56173 * 2 1 4 4 N 1.28750 * 121.34823 * 179.97438 * 3 2 1 5 5 C 1.32223 * 120.38824 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.43912 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46921 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.46931 * 300.00310 * 6 5 4 9 9 H 1.07995 * 120.00455 * 359.97438 * 8 6 5 10 10 C 1.37880 * 119.99590 * 179.97438 * 8 6 5 11 11 N 1.31510 * 120.00176 * 0.02562 * 10 8 6 12 12 Si 1.86806 * 119.99873 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47325 * 89.99988 * 12 10 8 14 14 H 1.48506 * 109.46995 * 210.00320 * 12 10 8 15 15 H 1.48503 * 109.46817 * 329.99894 * 12 10 8 16 16 C 1.52996 * 109.47023 * 60.00148 * 6 5 4 17 17 N 1.46900 * 109.46913 * 64.99936 * 16 6 5 18 18 C 1.38711 * 119.12193 * 0.02562 * 5 4 3 19 19 C 1.50704 * 120.63275 * 179.97438 * 18 5 4 20 20 N 1.32023 * 119.56600 * 179.72638 * 2 1 3 21 21 H 1.09002 * 109.47152 * 90.00021 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00121 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00102 * 1 2 3 24 24 H 0.97008 * 119.99920 * 180.02562 * 11 10 8 25 25 H 1.08994 * 109.47573 * 184.99905 * 16 6 5 26 26 H 1.09002 * 109.47019 * 304.99965 * 16 6 5 27 27 H 1.00900 * 110.99859 * 56.04890 * 17 16 6 28 28 H 1.00902 * 110.99929 * 179.97438 * 17 16 6 29 29 H 1.09006 * 109.47062 * 89.99194 * 19 18 5 30 30 H 1.08995 * 109.47362 * 209.99517 * 19 18 5 31 31 H 1.08998 * 109.46628 * 330.00025 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1583 1.1482 0.0000 4 7 3.4452 1.1884 0.0005 5 6 4.1493 0.0692 0.0015 6 6 5.6556 0.1148 0.0015 7 1 6.0498 -0.9014 0.0029 8 6 6.1361 0.8391 -1.2295 9 1 5.4223 1.2271 -1.9410 10 6 7.4873 1.0063 -1.4475 11 7 8.3566 0.5334 -0.5814 12 14 8.0831 1.9034 -2.9739 13 1 8.2035 3.3541 -2.6801 14 1 9.4084 1.3682 -3.3769 15 1 7.1109 1.7010 -4.0781 16 6 6.1434 0.8523 1.2501 17 7 5.7779 0.0832 2.4471 18 6 3.4831 -1.1475 0.0015 19 6 4.2517 -2.4438 0.0021 20 7 2.1585 -1.1483 0.0055 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 9.3072 0.6514 -0.7347 25 1 7.2268 0.9634 1.2065 26 1 5.6787 1.8373 1.2951 27 1 6.1433 -0.8560 2.3990 28 1 6.0897 0.5496 3.2858 29 1 4.4367 -2.7560 1.0300 30 1 3.6717 -3.2103 -0.5117 31 1 5.2027 -2.3024 -0.5114 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261290579.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:34 Heat of formation + Delta-G solvation = 35.885463 kcal Electronic energy + Delta-G solvation = -15263.110980 eV Core-core repulsion = 12771.899160 eV Total energy + Delta-G solvation = -2491.211821 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.72404 -37.71365 -36.19978 -34.79047 -34.11575 -31.20904 -30.21037 -28.59732 -26.13144 -25.24416 -23.48043 -22.01797 -19.82921 -18.38587 -17.25488 -16.79533 -16.54814 -16.33507 -15.53018 -14.81107 -14.38035 -14.23371 -14.02010 -13.94722 -13.63824 -13.55277 -13.18488 -13.05277 -12.88255 -12.71888 -12.38021 -12.02569 -11.95567 -11.61760 -11.40221 -10.59494 -10.29143 -10.06961 -9.40672 -8.17352 -6.30465 -0.31163 -0.03260 1.39168 1.42299 1.50707 2.38327 2.62783 2.80007 2.96773 3.10302 3.32298 3.86162 4.00657 4.20111 4.35345 4.64094 4.67272 4.71112 4.79081 4.80386 4.95286 5.01183 5.14706 5.35823 5.41340 5.72430 5.76834 6.04684 6.12955 6.45832 6.64216 6.84089 7.35570 7.68763 8.84691 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.030681 B = 0.009312 C = 0.008442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.395415 B = 3006.181808 C = 3315.838548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.215 3.785 3 N -0.320 5.320 4 N -0.221 5.221 5 C 0.066 3.934 6 C 0.104 3.896 7 H 0.057 0.943 8 C -0.525 4.525 9 H 0.037 0.963 10 C 0.031 3.969 11 N -0.903 5.903 12 Si 0.950 3.050 13 H -0.279 1.279 14 H -0.273 1.273 15 H -0.277 1.277 16 C 0.080 3.920 17 N -0.855 5.855 18 C 0.147 3.853 19 C -0.100 4.100 20 N -0.482 5.482 21 H 0.101 0.899 22 H 0.096 0.904 23 H 0.102 0.898 24 H 0.267 0.733 25 H 0.053 0.947 26 H 0.028 0.972 27 H 0.340 0.660 28 H 0.338 0.662 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.586 -5.726 2.538 9.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.055 4.055 3 N -0.166 5.166 4 N -0.068 5.068 5 C -0.084 4.084 6 C 0.083 3.917 7 H 0.075 0.925 8 C -0.564 4.564 9 H 0.055 0.945 10 C -0.170 4.170 11 N -0.541 5.541 12 Si 0.776 3.224 13 H -0.205 1.205 14 H -0.198 1.198 15 H -0.202 1.202 16 C -0.051 4.051 17 N -0.384 5.384 18 C -0.010 4.010 19 C -0.157 4.157 20 N -0.204 5.204 21 H 0.119 0.881 22 H 0.114 0.886 23 H 0.121 0.879 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.786 -4.671 2.332 10.220 hybrid contribution 2.028 0.091 -0.619 2.122 sum -6.758 -4.579 1.713 8.342 Atomic orbital electron populations 1.20630 0.81725 1.05420 1.05162 1.25467 1.01580 0.85548 0.92871 1.73491 1.02441 1.27222 1.13439 1.73490 0.99645 1.27391 1.06279 1.23975 1.01411 0.90731 0.92242 1.17785 0.81853 0.98136 0.93948 0.92513 1.21062 0.91849 1.37470 1.06056 0.94505 1.25476 0.96542 0.95847 0.99101 1.69902 1.02147 1.45925 1.36169 0.85683 0.77790 0.78897 0.80061 1.20510 1.19826 1.20237 1.21654 0.99615 0.95070 0.88734 1.58920 1.68137 1.06766 1.04594 1.23009 0.90689 0.98149 0.89173 1.20927 0.99365 0.90185 1.05247 1.68759 1.08305 1.30310 1.13011 0.88105 0.88565 0.87912 0.92373 0.92912 0.95299 0.84809 0.85059 0.87376 0.88181 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 10.35 71.24 0.74 -0.93 16 2 C 0.22 7.84 7.71 138.62 1.07 8.91 16 3 N -0.32 -13.92 11.48 -51.35 -0.59 -14.51 16 4 N -0.22 -10.79 11.17 -47.42 -0.53 -11.32 16 5 C 0.07 3.00 5.20 42.61 0.22 3.22 16 6 C 0.10 4.95 2.00 -12.29 -0.02 4.93 16 7 H 0.06 2.66 5.60 -2.39 -0.01 2.64 16 8 C -0.53 -28.40 8.45 25.60 0.22 -28.19 16 9 H 0.04 2.11 7.74 -2.91 -0.02 2.09 16 10 C 0.03 1.63 5.29 84.66 0.45 2.07 16 11 N -0.90 -47.55 11.29 21.45 0.24 -47.31 16 12 Si 0.95 42.67 29.54 68.60 2.03 44.69 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 16 C 0.08 3.74 5.97 86.30 0.52 4.25 16 17 N -0.86 -31.99 9.34 -186.73 -1.74 -33.73 16 18 C 0.15 5.72 6.82 42.58 0.29 6.01 16 19 C -0.10 -2.96 9.63 71.24 0.69 -2.27 16 20 N -0.48 -17.75 10.39 -175.57 -1.82 -19.58 16 21 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 24 H 0.27 13.39 8.31 -92.70 -0.77 12.62 16 25 H 0.05 2.67 5.95 -2.39 -0.01 2.65 16 26 H 0.03 1.46 7.94 -2.39 -0.02 1.44 16 27 H 0.34 11.53 8.99 -89.69 -0.81 10.72 16 28 H 0.34 11.13 9.08 -89.69 -0.81 10.32 16 29 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 30 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.09 2.81 6.20 -2.39 -0.01 2.80 16 Total: -1.00 -63.21 266.48 1.29 -61.92 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -0.45 Total: 21.83 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 4.16 Total: -1.99 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -4.45 Total: -126.45 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -63.21 1.29 -61.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261290579.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.805 kcal (2) G-P(sol) polarization free energy of solvation -63.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds