Wall clock time and date at job start Mon Mar 30 2020 02:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99413 * 2 1 4 4 C 1.39196 * 111.00528 * 123.94949 * 2 1 3 5 5 N 1.32395 * 120.14148 * 304.00677 * 4 2 1 6 6 C 1.32452 * 119.99877 * 180.02562 * 5 4 2 7 7 C 1.37894 * 120.27775 * 0.02562 * 6 5 4 8 8 N 1.32451 * 120.27902 * 359.74477 * 7 6 5 9 9 C 1.32396 * 119.99355 * 0.50306 * 8 7 6 10 10 N 1.39206 * 120.13633 * 179.77246 * 9 8 7 11 11 C 1.46503 * 119.99889 * 354.37029 * 10 9 8 12 12 C 1.50701 * 109.46909 * 179.97438 * 11 10 9 13 13 H 1.07991 * 120.00248 * 0.02562 * 12 11 10 14 14 C 1.37887 * 119.99792 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99967 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99914 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46993 * 60.00169 * 16 14 12 18 18 H 1.48502 * 109.47072 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47165 * 300.00046 * 16 14 12 20 20 H 1.08995 * 109.47223 * 296.04177 * 1 2 3 21 21 H 1.08995 * 109.47415 * 56.04696 * 1 2 3 22 22 H 1.09010 * 109.46659 * 176.04232 * 1 2 3 23 23 H 1.09001 * 109.46633 * 188.39716 * 3 2 1 24 24 H 1.08996 * 109.47294 * 308.39731 * 3 2 1 25 25 H 1.09000 * 109.46929 * 68.39713 * 3 2 1 26 26 H 1.08001 * 119.85840 * 179.97438 * 6 5 4 27 27 H 1.08003 * 119.85903 * 180.02562 * 7 6 5 28 28 H 0.96992 * 120.00091 * 174.37727 * 10 9 8 29 29 H 1.09002 * 109.47303 * 300.00176 * 11 10 9 30 30 H 1.09004 * 109.47054 * 60.00057 * 11 10 9 31 31 H 0.96997 * 120.00345 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3716 0.0000 4 6 1.9679 -0.7257 1.0779 5 7 1.6084 -0.4132 2.3132 6 6 2.0853 -1.1053 3.3369 7 6 2.9570 -2.1521 3.1226 8 7 3.3204 -2.4771 1.8912 9 6 2.8542 -1.7895 0.8602 10 7 3.2380 -2.1256 -0.4350 11 6 4.2526 -3.1596 -0.6534 12 6 4.4842 -3.3316 -2.1325 13 1 3.9313 -2.7307 -2.8391 14 6 5.4021 -4.2564 -2.5836 15 7 6.0751 -4.9886 -1.7231 16 14 5.6896 -4.4692 -4.4170 17 1 6.1595 -3.1853 -4.9966 18 1 6.7172 -5.5183 -4.6384 19 1 4.4205 -4.8738 -5.0734 20 1 -0.3633 0.4511 0.9233 21 1 -0.3634 0.5739 -0.8524 22 1 -0.3633 -1.0253 -0.0709 23 1 3.0746 1.3464 -0.1501 24 1 1.5296 1.9395 -0.8054 25 1 1.7722 1.8463 0.9555 26 1 1.7909 -0.8481 4.3437 27 1 3.3414 -2.7122 3.9623 28 1 2.8337 -1.6751 -1.1929 29 1 5.1841 -2.8622 -0.1716 30 1 3.9083 -4.1022 -0.2278 31 1 6.7205 -5.6394 -2.0404 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306173937.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:34 Heat of formation + Delta-G solvation = 40.576419 kcal Electronic energy + Delta-G solvation = -14881.200002 eV Core-core repulsion = 12390.191597 eV Total energy + Delta-G solvation = -2491.008405 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.01392 -38.17491 -37.23752 -34.90444 -33.80653 -31.11066 -28.62363 -28.50460 -26.57053 -25.06711 -23.45068 -22.76251 -19.58329 -18.40168 -17.98534 -17.64839 -16.66524 -16.55474 -15.72475 -15.25759 -15.19281 -14.87076 -14.37605 -14.33395 -13.96729 -13.23812 -13.01979 -12.86146 -12.76735 -12.65740 -12.39633 -12.19510 -12.12513 -11.45866 -11.09323 -10.59239 -10.23738 -9.51830 -8.52705 -8.27759 -6.42998 0.05234 0.44390 1.42419 1.46231 1.54279 2.31463 2.51535 2.72531 2.89052 3.06810 3.53297 3.64968 3.95960 4.33504 4.42440 4.43240 4.50297 4.62187 4.76983 4.92747 4.95442 5.09246 5.31098 5.33177 5.52636 5.84878 5.87025 6.06633 6.25154 6.45319 6.68676 6.86471 7.23727 7.35878 8.83756 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.033905 B = 0.007331 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.649662 B = 3818.483058 C = 4463.200575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.495 5.495 3 C 0.035 3.965 4 C 0.160 3.840 5 N -0.441 5.441 6 C -0.026 4.026 7 C 0.099 3.901 8 N -0.540 5.540 9 C 0.366 3.634 10 N -0.685 5.685 11 C 0.283 3.717 12 C -0.561 4.561 13 H 0.074 0.926 14 C 0.009 3.991 15 N -0.926 5.926 16 Si 0.980 3.020 17 H -0.264 1.264 18 H -0.282 1.282 19 H -0.265 1.265 20 H 0.039 0.961 21 H 0.097 0.903 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.100 0.900 25 H 0.035 0.965 26 H 0.200 0.800 27 H 0.198 0.802 28 H 0.415 0.585 29 H -0.011 1.011 30 H -0.009 1.009 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.249 9.994 5.634 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.218 5.218 3 C -0.112 4.112 4 C -0.081 4.081 5 N -0.158 5.158 6 C -0.188 4.188 7 C -0.061 4.061 8 N -0.265 5.265 9 C 0.123 3.877 10 N -0.314 5.314 11 C 0.160 3.840 12 C -0.599 4.599 13 H 0.092 0.908 14 C -0.191 4.191 15 N -0.565 5.565 16 Si 0.803 3.197 17 H -0.189 1.189 18 H -0.207 1.207 19 H -0.190 1.190 20 H 0.058 0.942 21 H 0.116 0.884 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.054 0.946 26 H 0.217 0.783 27 H 0.215 0.785 28 H 0.253 0.747 29 H 0.006 0.994 30 H 0.009 0.991 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.807 9.472 5.136 13.916 hybrid contribution 0.105 -0.002 -0.144 0.178 sum -8.702 9.470 4.992 13.796 Atomic orbital electron populations 1.22386 0.84418 1.02213 1.02164 1.59929 1.10330 1.15356 1.36228 1.22415 1.00345 0.86599 1.01867 1.19957 1.01402 0.97319 0.89397 1.68179 1.21355 1.26879 0.99368 1.23610 0.99714 0.96206 0.99250 1.24041 0.93146 0.95273 0.93657 1.68156 1.27978 1.30086 1.00254 1.19513 0.90718 0.89797 0.87717 1.45082 1.42357 1.41024 1.02910 1.18476 0.84965 0.85000 0.95510 1.21584 1.24002 1.22353 0.91915 0.90823 1.25953 0.94767 0.94598 1.03753 1.70103 1.25827 1.23833 1.36708 0.85285 0.78246 0.78236 0.77933 1.18901 1.20679 1.18959 0.94188 0.88399 0.92736 0.92759 0.88164 0.94581 0.78314 0.78513 0.74691 0.99361 0.99070 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 9.41 127.69 1.20 2.08 16 2 N -0.49 -15.08 4.18 -750.49 -3.14 -18.22 16 3 C 0.03 0.89 9.56 127.69 1.22 2.11 16 4 C 0.16 5.71 5.39 133.25 0.72 6.42 16 5 N -0.44 -14.08 9.65 -192.06 -1.85 -15.93 16 6 C -0.03 -0.69 11.20 84.52 0.95 0.25 16 7 C 0.10 3.02 11.20 84.52 0.95 3.97 16 8 N -0.54 -22.59 9.74 -192.05 -1.87 -24.46 16 9 C 0.37 15.50 7.51 133.25 1.00 16.50 16 10 N -0.68 -31.71 5.69 -347.69 -1.98 -33.69 16 11 C 0.28 15.77 5.48 85.63 0.47 16.24 16 12 C -0.56 -31.57 9.28 25.60 0.24 -31.34 16 13 H 0.07 3.88 7.60 -2.92 -0.02 3.86 16 14 C 0.01 0.52 5.46 84.66 0.46 0.98 16 15 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 16 Si 0.98 43.19 29.54 68.60 2.03 45.21 16 17 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 H 0.04 0.98 7.79 -2.39 -0.02 0.96 16 21 H 0.10 1.87 8.07 -2.39 -0.02 1.85 16 22 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.10 1.95 8.04 -2.39 -0.02 1.93 16 25 H 0.04 0.91 7.92 -2.39 -0.02 0.89 16 26 H 0.20 3.48 8.06 -2.91 -0.02 3.46 16 27 H 0.20 4.27 8.06 -2.91 -0.02 4.24 16 28 H 0.41 17.90 7.62 -92.71 -0.71 17.20 16 29 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 30 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 31 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -68.37 271.93 1.09 -67.27 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.42 Total: 18.07 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 7.20 Total: 17.21 kcal Atomic # 7 Polarization: -139.21 SS G_CDS: -8.56 Total: -147.77 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -68.37 1.09 -67.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306173937.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.851 kcal (2) G-P(sol) polarization free energy of solvation -68.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds