Wall clock time and date at job start Mon Mar 30 2020 02:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 N 1.31763 * 119.04195 * 269.73049 * 3 2 1 5 5 C 1.33167 * 120.87786 * 179.71983 * 4 3 2 6 6 N 1.38630 * 120.48678 * 180.27369 * 5 4 3 7 7 C 1.39171 * 119.03001 * 0.53941 * 5 4 3 8 8 C 1.39127 * 118.26762 * 359.73328 * 7 5 4 9 9 N 1.38627 * 120.48720 * 179.97438 * 8 7 5 10 10 C 1.46501 * 119.99732 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47106 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99886 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00075 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99898 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00089 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47234 * 89.99727 * 15 13 11 17 17 H 1.48493 * 109.46996 * 209.99695 * 15 13 11 18 18 H 1.48502 * 109.46942 * 329.99861 * 15 13 11 19 19 N 1.31725 * 119.04554 * 89.99747 * 3 2 1 20 20 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 23 23 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 24 24 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 25 25 H 0.96994 * 119.99774 * 180.27019 * 6 5 4 26 26 H 0.96996 * 119.99407 * 0.27163 * 6 5 4 27 27 H 1.08002 * 120.86632 * 179.75888 * 7 5 4 28 28 H 0.97002 * 120.00278 * 180.02562 * 9 8 7 29 29 H 1.08999 * 109.47193 * 299.99673 * 10 9 8 30 30 H 1.09001 * 109.47190 * 60.00393 * 10 9 8 31 31 H 0.97002 * 119.99808 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2508 2.0220 -1.1519 5 6 2.6894 3.2787 -1.1946 6 7 2.9110 3.9053 -2.4112 7 6 2.9273 3.9519 -0.0001 8 6 2.6893 3.2790 1.1942 9 7 2.9113 3.9054 2.4108 10 6 3.3996 5.2862 2.4453 11 6 3.5558 5.7282 3.8775 12 1 3.3158 5.0483 4.6816 13 6 4.0051 7.0004 4.1613 14 7 4.2978 7.8281 3.1821 15 14 4.1993 7.5480 5.9367 16 1 5.5710 7.2270 6.4065 17 1 3.9742 9.0128 6.0304 18 1 3.2072 6.8394 6.7847 19 7 2.2456 2.0237 1.1516 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5137 0.8901 24 1 1.8934 -0.5139 -0.8900 25 1 3.2342 4.8195 -2.4340 26 1 2.7427 3.4294 -3.2395 27 1 3.2870 4.9702 -0.0001 28 1 2.7434 3.4295 3.2392 29 1 4.3636 5.3435 1.9398 30 1 2.6854 5.9369 1.9405 31 1 4.6142 8.7230 3.3818 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306182174.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:13 Heat of formation + Delta-G solvation = 32.333445 kcal Electronic energy + Delta-G solvation = -14491.842692 eV Core-core repulsion = 12000.476844 eV Total energy + Delta-G solvation = -2491.365848 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.25691 -35.99674 -35.31034 -33.22055 -32.15335 -30.89759 -28.89207 -26.93959 -24.63653 -22.86030 -22.05293 -20.65115 -18.08329 -17.24541 -16.28857 -15.49158 -14.92731 -14.74467 -14.61278 -14.02398 -13.76964 -13.69117 -13.11700 -12.89691 -12.26932 -12.08267 -11.53884 -11.25933 -10.99014 -10.92146 -10.86806 -10.34326 -9.94913 -9.77887 -9.46443 -8.67453 -8.60353 -7.96681 -7.16372 -6.27253 -4.32795 1.83237 2.27171 3.20664 3.26994 3.30113 3.71075 4.01956 4.31942 4.54552 4.66617 5.10588 5.24287 5.48187 5.55116 5.58055 5.80132 5.98178 6.07258 6.22349 6.28706 6.34226 6.72955 7.05929 7.30099 7.34563 7.50081 7.63834 7.82739 7.87002 8.35799 8.54298 8.77309 9.07547 9.34283 10.83341 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.039383 B = 0.006063 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.804260 B = 4616.818259 C = 5231.202166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C 0.388 3.612 4 N -0.626 5.626 5 C 0.456 3.544 6 N -0.846 5.846 7 C -0.367 4.367 8 C 0.462 3.538 9 N -0.690 5.690 10 C 0.253 3.747 11 C -0.541 4.541 12 H 0.065 0.935 13 C 0.065 3.935 14 N -0.889 5.889 15 Si 0.906 3.094 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 N -0.616 5.616 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.408 0.592 26 H 0.400 0.600 27 H 0.136 0.864 28 H 0.399 0.601 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 -9.174 -7.866 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C 0.116 3.884 4 N -0.358 5.358 5 C 0.215 3.785 6 N -0.390 5.390 7 C -0.401 4.401 8 C 0.218 3.782 9 N -0.315 5.315 10 C 0.132 3.868 11 C -0.579 4.579 12 H 0.083 0.917 13 C -0.139 4.139 14 N -0.527 5.527 15 Si 0.733 3.267 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.196 1.196 19 N -0.346 5.346 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.103 0.897 24 H 0.101 0.899 25 H 0.238 0.762 26 H 0.229 0.771 27 H 0.154 0.846 28 H 0.234 0.766 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.983 -9.560 -7.803 12.967 hybrid contribution 0.548 1.501 0.853 1.812 sum -3.435 -8.059 -6.950 11.182 Atomic orbital electron populations 1.21646 0.94144 1.01679 1.02386 1.20226 0.96317 0.88977 1.03344 1.22296 0.88250 0.95524 0.82311 1.67634 1.27515 1.09836 1.30765 1.18081 0.86323 0.87949 0.86098 1.42042 1.74955 1.17303 1.04678 1.21228 1.23335 1.04390 0.91166 1.18381 0.85374 0.87163 0.87255 1.45356 1.66748 1.15914 1.03489 1.19239 0.94333 0.75054 0.98169 1.21179 1.46345 0.99033 0.91358 0.91681 1.24919 0.94681 0.96098 0.98154 1.69941 1.43862 1.07233 1.31636 0.86364 0.78676 0.77857 0.83787 1.20371 1.20945 1.19641 1.67763 1.26259 1.10241 1.30368 0.92557 0.92105 0.92329 0.89673 0.89865 0.76191 0.77143 0.84579 0.76627 0.95649 0.95644 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.90 37.16 0.37 -1.28 16 2 C -0.05 -0.66 6.37 -27.88 -0.18 -0.83 16 3 C 0.39 6.92 6.90 -157.28 -1.08 5.84 16 4 N -0.63 -11.19 10.36 -10.03 -0.10 -11.30 16 5 C 0.46 8.07 7.81 -154.71 -1.21 6.86 16 6 N -0.85 -10.99 9.06 31.19 0.28 -10.71 16 7 C -0.37 -7.33 9.26 -38.91 -0.36 -7.69 16 8 C 0.46 9.84 7.70 -154.70 -1.19 8.65 16 9 N -0.69 -15.35 5.71 -61.51 -0.35 -15.70 16 10 C 0.25 6.37 4.68 -5.19 -0.02 6.35 16 11 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 12 H 0.07 1.68 7.60 -52.49 -0.40 1.29 16 13 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -25.06 13.29 55.43 0.74 -24.33 16 15 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 N -0.62 -12.31 10.36 -10.03 -0.10 -12.42 16 20 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.41 4.52 8.84 -40.82 -0.36 4.16 16 26 H 0.40 4.35 8.95 -40.82 -0.37 3.99 16 27 H 0.14 2.75 6.85 -52.49 -0.36 2.39 16 28 H 0.40 8.51 8.45 -40.82 -0.34 8.16 16 29 H 0.03 0.68 7.97 -51.93 -0.41 0.27 16 30 H 0.03 0.68 7.97 -51.93 -0.41 0.27 16 31 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 272.63 15.07 4.11 4.11 Total: -1.00 -29.90 272.63 -8.45 -38.35 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -3.91 Total: 11.63 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -4.10 Total: 4.74 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: 0.46 Total: -74.45 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.90 -8.45 -38.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306182174.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.687 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds