Wall clock time and date at job start Mon Mar 30 2020 02:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 N 1.31763 * 119.04195 * 269.73049 * 3 2 1 5 5 C 1.33167 * 120.87786 * 179.71983 * 4 3 2 6 6 N 1.38630 * 120.48678 * 180.27369 * 5 4 3 7 7 C 1.39171 * 119.03001 * 0.53941 * 5 4 3 8 8 C 1.39127 * 118.26762 * 359.73328 * 7 5 4 9 9 N 1.38627 * 120.48720 * 179.97438 * 8 7 5 10 10 C 1.46501 * 119.99732 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47106 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99886 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00075 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99898 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00089 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47234 * 89.99727 * 15 13 11 17 17 H 1.48493 * 109.46996 * 209.99695 * 15 13 11 18 18 H 1.48502 * 109.46942 * 329.99861 * 15 13 11 19 19 N 1.31725 * 119.04554 * 89.99747 * 3 2 1 20 20 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 23 23 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 24 24 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 25 25 H 0.96994 * 119.99774 * 180.27019 * 6 5 4 26 26 H 0.96996 * 119.99407 * 0.27163 * 6 5 4 27 27 H 1.08002 * 120.86632 * 179.75888 * 7 5 4 28 28 H 0.97002 * 120.00278 * 180.02562 * 9 8 7 29 29 H 1.08999 * 109.47193 * 299.99673 * 10 9 8 30 30 H 1.09001 * 109.47190 * 60.00393 * 10 9 8 31 31 H 0.97002 * 119.99808 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2508 2.0220 -1.1519 5 6 2.6894 3.2787 -1.1946 6 7 2.9110 3.9053 -2.4112 7 6 2.9273 3.9519 -0.0001 8 6 2.6893 3.2790 1.1942 9 7 2.9113 3.9054 2.4108 10 6 3.3996 5.2862 2.4453 11 6 3.5558 5.7282 3.8775 12 1 3.3158 5.0483 4.6816 13 6 4.0051 7.0004 4.1613 14 7 4.2978 7.8281 3.1821 15 14 4.1993 7.5480 5.9367 16 1 5.5710 7.2270 6.4065 17 1 3.9742 9.0128 6.0304 18 1 3.2072 6.8394 6.7847 19 7 2.2456 2.0237 1.1516 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5137 0.8901 24 1 1.8934 -0.5139 -0.8900 25 1 3.2342 4.8195 -2.4340 26 1 2.7427 3.4294 -3.2395 27 1 3.2870 4.9702 -0.0001 28 1 2.7434 3.4295 3.2392 29 1 4.3636 5.3435 1.9398 30 1 2.6854 5.9369 1.9405 31 1 4.6142 8.7230 3.3818 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306182174.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:13 Heat of formation + Delta-G solvation = 11.810553 kcal Electronic energy + Delta-G solvation = -14492.732631 eV Core-core repulsion = 12000.476844 eV Total energy + Delta-G solvation = -2492.255787 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.72568 -37.68026 -36.61284 -35.03963 -33.56831 -32.38710 -30.35283 -28.85766 -25.97709 -24.64934 -23.51233 -22.07869 -19.70888 -18.75951 -17.98618 -16.90566 -16.76137 -16.23867 -16.17238 -15.49964 -15.17009 -14.93353 -14.67213 -14.61565 -14.04422 -13.39950 -12.93091 -12.89034 -12.59121 -12.50087 -12.24719 -11.87340 -11.55614 -11.36700 -11.28910 -10.68767 -10.10286 -9.35374 -8.85520 -8.33504 -6.47348 0.36450 0.73771 1.42105 1.42919 1.54293 2.23515 2.42689 2.57645 3.01691 3.08814 3.36257 3.93610 4.21400 4.39092 4.49850 4.52356 4.65722 4.80733 4.95711 5.08203 5.20953 5.22002 5.32520 5.44849 5.58749 5.78071 5.89062 6.21358 6.44103 6.61186 6.85998 7.04091 7.25004 7.59125 8.78118 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.039383 B = 0.006063 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.804260 B = 4616.818259 C = 5231.202166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.048 4.048 3 C 0.381 3.619 4 N -0.625 5.625 5 C 0.460 3.540 6 N -0.821 5.821 7 C -0.390 4.390 8 C 0.445 3.555 9 N -0.695 5.695 10 C 0.276 3.724 11 C -0.561 4.561 12 H 0.071 0.929 13 C 0.014 3.986 14 N -0.923 5.923 15 Si 0.978 3.022 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.264 1.264 19 N -0.629 5.629 20 H 0.050 0.950 21 H 0.093 0.907 22 H 0.042 0.958 23 H 0.094 0.906 24 H 0.103 0.897 25 H 0.419 0.581 26 H 0.415 0.585 27 H 0.125 0.875 28 H 0.401 0.599 29 H 0.002 0.998 30 H 0.002 0.998 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 -10.287 -8.062 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.087 4.087 3 C 0.110 3.890 4 N -0.356 5.356 5 C 0.216 3.784 6 N -0.366 5.366 7 C -0.424 4.424 8 C 0.203 3.797 9 N -0.323 5.323 10 C 0.153 3.847 11 C -0.599 4.599 12 H 0.089 0.911 13 C -0.186 4.186 14 N -0.561 5.561 15 Si 0.802 3.198 16 H -0.196 1.196 17 H -0.204 1.204 18 H -0.188 1.188 19 N -0.360 5.360 20 H 0.069 0.931 21 H 0.111 0.889 22 H 0.061 0.939 23 H 0.112 0.888 24 H 0.121 0.879 25 H 0.251 0.749 26 H 0.246 0.754 27 H 0.143 0.857 28 H 0.236 0.764 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.383 -10.696 -8.063 14.093 hybrid contribution 0.648 1.782 0.744 2.037 sum -3.734 -8.914 -7.319 12.123 Atomic orbital electron populations 1.21613 0.92764 1.03486 1.01314 1.20434 0.97307 0.86208 1.04765 1.23288 0.86920 0.97103 0.81705 1.67818 1.27575 1.09589 1.30643 1.18257 0.85345 0.87956 0.86812 1.41998 1.73122 1.17703 1.03783 1.21251 1.24880 1.04244 0.92011 1.18593 0.85981 0.88055 0.87093 1.45040 1.68046 1.14975 1.04221 1.18731 0.92462 0.76311 0.97173 1.21534 1.46629 0.99645 0.92087 0.91095 1.25857 0.94018 0.96039 1.02693 1.70056 1.44436 1.07691 1.33940 0.85250 0.78901 0.77438 0.78239 1.19645 1.20428 1.18794 1.67828 1.26968 1.09629 1.31565 0.93096 0.88873 0.93885 0.88770 0.87871 0.74928 0.75410 0.85700 0.76353 0.98037 0.98044 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.90 71.98 0.71 -2.10 16 2 C -0.05 -1.17 6.37 29.85 0.19 -0.98 16 3 C 0.38 13.13 6.90 138.78 0.96 14.09 16 4 N -0.62 -21.40 10.36 -185.65 -1.92 -23.33 16 5 C 0.46 15.88 7.81 132.97 1.04 16.92 16 6 N -0.82 -19.97 9.06 -55.22 -0.50 -20.47 16 7 C -0.39 -15.89 9.26 22.71 0.21 -15.68 16 8 C 0.44 19.36 7.70 132.95 1.02 20.39 16 9 N -0.70 -32.01 5.71 -348.51 -1.99 -33.99 16 10 C 0.28 14.47 4.68 85.63 0.40 14.87 16 11 C -0.56 -30.60 9.28 25.60 0.24 -30.36 16 12 H 0.07 3.69 7.60 -2.91 -0.02 3.67 16 13 C 0.01 0.78 5.46 84.65 0.46 1.24 16 14 N -0.92 -52.86 13.29 21.45 0.28 -52.58 16 15 Si 0.98 42.18 29.54 68.60 2.03 44.20 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 17 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 19 N -0.63 -25.09 10.36 -185.66 -1.92 -27.01 16 20 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 22 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.42 8.68 8.84 -92.71 -0.82 7.86 16 26 H 0.41 7.99 8.95 -92.71 -0.83 7.16 16 27 H 0.13 5.28 6.85 -2.91 -0.02 5.26 16 28 H 0.40 17.60 8.45 -92.71 -0.78 16.81 16 29 H 0.00 0.10 7.97 -2.39 -0.02 0.08 16 30 H 0.00 0.10 7.97 -2.39 -0.02 0.08 16 31 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -64.31 272.63 -0.05 -64.36 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -1.26 Total: 30.42 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 5.23 Total: 18.39 kcal Atomic # 7 Polarization: -151.33 SS G_CDS: -6.05 Total: -157.38 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -64.31 -0.05 -64.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306182174.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.173 kcal (2) G-P(sol) polarization free energy of solvation -64.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds