Wall clock time and date at job start Mon Mar 30 2020 02:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50707 * 109.82787 * 2 1 4 4 H 1.07997 * 119.99873 * 239.09547 * 3 2 1 5 5 C 1.37872 * 119.99995 * 59.09940 * 3 2 1 6 6 N 1.31514 * 120.00322 * 359.97438 * 5 3 2 7 7 Si 1.86801 * 119.99875 * 180.02562 * 5 3 2 8 8 H 1.48504 * 109.47198 * 89.99516 * 7 5 3 9 9 H 1.48506 * 109.47309 * 209.99351 * 7 5 3 10 10 H 1.48494 * 109.47308 * 329.99771 * 7 5 3 11 11 C 1.54475 * 109.83952 * 239.09743 * 2 1 3 12 12 C 1.55513 * 102.37357 * 219.06255 * 11 2 1 13 13 C 1.53831 * 100.78303 * 32.95877 * 12 11 2 14 14 C 1.53984 * 110.64433 * 86.60439 * 13 12 11 15 15 C 1.55255 * 102.05915 * 158.69751 * 14 13 12 16 16 C 1.54409 * 104.12937 * 321.49471 * 15 14 13 17 17 H 1.09007 * 117.39239 * 164.76590 * 16 15 14 18 18 C 1.52883 * 118.46572 * 319.91002 * 16 15 14 19 19 C 1.53117 * 60.50971 * 93.17728 * 18 16 15 20 20 H 1.09006 * 119.32411 * 111.30257 * 19 18 16 21 21 O 1.42339 * 106.65697 * 325.02250 * 13 12 11 22 22 H 1.09000 * 109.47374 * 180.89953 * 1 2 3 23 23 H 1.08999 * 109.47693 * 300.90668 * 1 2 3 24 24 H 1.09002 * 109.46860 * 60.90570 * 1 2 3 25 25 H 0.96998 * 120.00589 * 180.02562 * 6 5 3 26 26 H 1.09003 * 110.82907 * 100.84580 * 11 2 1 27 27 H 1.08993 * 110.82838 * 337.28037 * 11 2 1 28 28 H 1.08997 * 111.15477 * 275.08430 * 12 11 2 29 29 H 1.08997 * 111.19689 * 150.85779 * 12 11 2 30 30 H 1.08995 * 110.91554 * 40.50592 * 14 13 12 31 31 H 1.08999 * 110.91368 * 276.88898 * 14 13 12 32 32 H 1.09005 * 110.50001 * 202.83305 * 15 14 13 33 33 H 1.09010 * 110.61665 * 80.21392 * 15 14 13 34 34 H 1.09002 * 117.44190 * 200.81035 * 18 16 15 35 35 H 1.09003 * 117.44026 * 345.55050 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6762 1.7627 -0.8025 5 6 1.6981 2.2742 1.0245 6 7 0.9244 1.8542 2.0016 7 14 2.3312 4.0317 1.0241 8 1 1.3685 4.9044 0.3052 9 1 2.4785 4.5051 2.4240 10 1 3.6497 4.0827 0.3429 11 6 2.0542 -0.7463 -1.2468 12 6 3.2767 -1.5230 -0.6807 13 6 2.7938 -1.8166 0.7500 14 6 1.9714 -3.1179 0.7891 15 6 2.0687 -3.5182 2.2860 16 6 3.5183 -3.1597 2.6787 17 1 3.7529 -3.1129 3.7422 18 6 4.6374 -3.4507 1.6785 19 6 3.9786 -2.0686 1.6914 20 1 4.5543 -1.2059 2.0268 21 8 2.0191 -0.6942 1.1575 22 1 -0.3634 -1.0275 0.0161 23 1 -0.3634 0.5278 0.8817 24 1 -0.3633 0.4997 -0.8980 25 1 0.6828 2.4569 2.7222 26 1 2.3661 -0.0415 -2.0177 27 1 1.3018 -1.4349 -1.6312 28 1 4.1704 -0.8990 -0.6738 29 1 3.4485 -2.4457 -1.2350 30 1 2.4196 -3.8807 0.1525 31 1 0.9363 -2.9328 0.5023 32 1 1.8936 -4.5872 2.4075 33 1 1.3588 -2.9459 2.8833 34 1 5.6524 -3.5271 2.0685 35 1 4.4048 -4.1102 0.8424 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306410973.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:12 Heat of formation + Delta-G solvation = -21.435152 kcal Electronic energy + Delta-G solvation = -16291.139618 eV Core-core repulsion = 13868.689782 eV Total energy + Delta-G solvation = -2422.449837 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.92300 -36.93983 -32.76185 -30.97787 -30.39353 -29.38783 -25.70309 -24.98973 -23.06995 -21.72018 -19.54727 -19.24919 -18.31146 -16.54901 -16.02912 -14.58262 -14.31577 -13.99341 -13.78862 -12.95498 -12.68902 -12.17931 -12.06972 -11.76643 -11.58921 -11.19984 -10.91318 -10.81388 -10.69451 -10.58085 -10.42446 -10.32441 -10.06107 -9.82737 -9.70103 -9.36841 -9.06521 -8.86047 -8.42950 -7.78808 -5.89697 -4.05633 3.32151 3.39519 3.42432 4.06854 4.46082 4.74788 5.12821 5.24266 5.40619 5.55274 5.59103 5.68534 5.82160 5.86455 5.88875 5.97525 6.12860 6.20954 6.34130 6.39477 6.46743 6.57972 6.66437 6.69070 6.74139 6.83574 6.91821 6.97693 7.03466 7.20825 7.46391 7.83212 8.15751 8.43728 8.73509 9.14147 9.65199 11.11909 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.034528 B = 0.010087 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.745186 B = 2775.214078 C = 2923.856478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.228 3.772 3 C -0.530 4.530 4 H 0.057 0.943 5 C 0.081 3.919 6 N -0.860 5.860 7 Si 0.886 3.114 8 H -0.281 1.281 9 H -0.286 1.286 10 H -0.274 1.274 11 C -0.143 4.143 12 C -0.135 4.135 13 C 0.135 3.865 14 C -0.141 4.141 15 C -0.086 4.086 16 C -0.171 4.171 17 H 0.102 0.898 18 C -0.154 4.154 19 C -0.146 4.146 20 H 0.110 0.890 21 O -0.329 6.329 22 H 0.011 0.989 23 H 0.090 0.910 24 H 0.035 0.965 25 H 0.258 0.742 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 -8.861 -1.720 9.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.191 3.809 3 C -0.568 4.568 4 H 0.075 0.925 5 C -0.124 4.124 6 N -0.497 5.497 7 Si 0.713 3.287 8 H -0.207 1.207 9 H -0.212 1.212 10 H -0.199 1.199 11 C -0.181 4.181 12 C -0.173 4.173 13 C 0.094 3.906 14 C -0.179 4.179 15 C -0.123 4.123 16 C -0.189 4.189 17 H 0.120 0.880 18 C -0.191 4.191 19 C -0.164 4.164 20 H 0.128 0.872 21 O -0.249 6.249 22 H 0.030 0.970 23 H 0.109 0.891 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.233 -8.727 -1.333 9.402 hybrid contribution 0.454 0.980 -0.088 1.084 sum 3.687 -7.748 -1.421 8.697 Atomic orbital electron populations 1.22001 0.97526 0.97565 1.02627 1.19740 0.90798 0.90429 0.79964 1.21237 1.32258 0.94707 1.08568 0.92482 1.24986 0.94263 0.97983 0.95173 1.69951 1.34400 1.34915 1.10425 0.86721 0.79397 0.85310 0.77225 1.20690 1.21204 1.19937 1.23248 0.96229 0.98365 1.00208 1.22934 0.99120 0.99218 0.96032 1.21391 0.89026 0.88654 0.91577 1.22935 1.01177 0.97715 0.96094 1.21894 0.94339 0.99499 0.96553 1.23111 0.94152 1.05682 0.95937 0.87971 1.22822 0.96532 0.98415 1.01355 1.23078 0.99930 0.92112 1.01284 0.87230 1.88619 1.66872 1.37399 1.31960 0.97026 0.89131 0.94632 0.93167 0.91557 0.93201 0.91148 0.92414 0.91965 0.91053 0.92731 0.90517 0.88847 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.53 37.15 0.32 -3.13 16 2 C 0.23 5.74 0.83 -91.00 -0.08 5.67 16 3 C -0.53 -14.69 8.23 -34.44 -0.28 -14.97 16 4 H 0.06 1.56 7.48 -52.49 -0.39 1.17 16 5 C 0.08 2.26 5.26 -17.82 -0.09 2.17 16 6 N -0.86 -24.94 10.92 55.43 0.61 -24.33 16 7 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 8 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 C -0.14 -3.03 5.98 -24.62 -0.15 -3.17 16 12 C -0.14 -2.62 6.09 -24.96 -0.15 -2.77 16 13 C 0.14 2.76 0.82 -89.46 -0.07 2.69 16 14 C -0.14 -2.51 5.50 -25.02 -0.14 -2.65 16 15 C -0.09 -1.43 6.77 -24.80 -0.17 -1.60 16 16 C -0.17 -2.81 7.07 -89.33 -0.63 -3.44 16 17 H 0.10 1.58 8.14 -51.92 -0.42 1.16 16 18 C -0.15 -2.26 9.83 -26.73 -0.26 -2.53 16 19 C -0.15 -2.72 6.19 -89.73 -0.56 -3.27 16 20 H 0.11 2.19 8.14 -51.93 -0.42 1.76 16 21 O -0.33 -8.46 9.69 -35.23 -0.34 -8.80 16 22 H 0.01 0.25 7.98 -51.93 -0.41 -0.17 16 23 H 0.09 2.48 6.01 -51.93 -0.31 2.17 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.07 1.39 7.61 -51.93 -0.40 0.99 16 27 H 0.05 0.97 7.85 -51.93 -0.41 0.56 16 28 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 29 H 0.06 0.96 7.79 -51.93 -0.40 0.55 16 30 H 0.06 0.97 7.08 -51.93 -0.37 0.60 16 31 H 0.07 1.33 7.98 -51.93 -0.41 0.92 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.41 8.14 -51.92 -0.42 0.98 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.20 7.21 -51.93 -0.37 0.83 16 LS Contribution 274.78 15.07 4.14 4.14 Total: -1.00 -29.29 274.78 -8.45 -37.74 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.57 Total: 1.87 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -2.26 Total: -27.01 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 0.61 Total: -24.33 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.34 Total: -8.80 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.29 -8.45 -37.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306410973.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.304 kcal (2) G-P(sol) polarization free energy of solvation -29.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds