Wall clock time and date at job start Mon Mar 30 2020 02:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50707 * 109.82787 * 2 1 4 4 H 1.07997 * 119.99873 * 239.09547 * 3 2 1 5 5 C 1.37872 * 119.99995 * 59.09940 * 3 2 1 6 6 N 1.31514 * 120.00322 * 359.97438 * 5 3 2 7 7 Si 1.86801 * 119.99875 * 180.02562 * 5 3 2 8 8 H 1.48504 * 109.47198 * 89.99516 * 7 5 3 9 9 H 1.48506 * 109.47309 * 209.99351 * 7 5 3 10 10 H 1.48494 * 109.47308 * 329.99771 * 7 5 3 11 11 C 1.54475 * 109.83952 * 239.09743 * 2 1 3 12 12 C 1.55513 * 102.37357 * 219.06255 * 11 2 1 13 13 C 1.53831 * 100.78303 * 32.95877 * 12 11 2 14 14 C 1.53984 * 110.64433 * 86.60439 * 13 12 11 15 15 C 1.55255 * 102.05915 * 158.69751 * 14 13 12 16 16 C 1.54409 * 104.12937 * 321.49471 * 15 14 13 17 17 H 1.09007 * 117.39239 * 164.76590 * 16 15 14 18 18 C 1.52883 * 118.46572 * 319.91002 * 16 15 14 19 19 C 1.53117 * 60.50971 * 93.17728 * 18 16 15 20 20 H 1.09006 * 119.32411 * 111.30257 * 19 18 16 21 21 O 1.42339 * 106.65697 * 325.02250 * 13 12 11 22 22 H 1.09000 * 109.47374 * 180.89953 * 1 2 3 23 23 H 1.08999 * 109.47693 * 300.90668 * 1 2 3 24 24 H 1.09002 * 109.46860 * 60.90570 * 1 2 3 25 25 H 0.96998 * 120.00589 * 180.02562 * 6 5 3 26 26 H 1.09003 * 110.82907 * 100.84580 * 11 2 1 27 27 H 1.08993 * 110.82838 * 337.28037 * 11 2 1 28 28 H 1.08997 * 111.15477 * 275.08430 * 12 11 2 29 29 H 1.08997 * 111.19689 * 150.85779 * 12 11 2 30 30 H 1.08995 * 110.91554 * 40.50592 * 14 13 12 31 31 H 1.08999 * 110.91368 * 276.88898 * 14 13 12 32 32 H 1.09005 * 110.50001 * 202.83305 * 15 14 13 33 33 H 1.09010 * 110.61665 * 80.21392 * 15 14 13 34 34 H 1.09002 * 117.44190 * 200.81035 * 18 16 15 35 35 H 1.09003 * 117.44026 * 345.55050 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6762 1.7627 -0.8025 5 6 1.6981 2.2742 1.0245 6 7 0.9244 1.8542 2.0016 7 14 2.3312 4.0317 1.0241 8 1 1.3685 4.9044 0.3052 9 1 2.4785 4.5051 2.4240 10 1 3.6497 4.0827 0.3429 11 6 2.0542 -0.7463 -1.2468 12 6 3.2767 -1.5230 -0.6807 13 6 2.7938 -1.8166 0.7500 14 6 1.9714 -3.1179 0.7891 15 6 2.0687 -3.5182 2.2860 16 6 3.5183 -3.1597 2.6787 17 1 3.7529 -3.1129 3.7422 18 6 4.6374 -3.4507 1.6785 19 6 3.9786 -2.0686 1.6914 20 1 4.5543 -1.2059 2.0268 21 8 2.0191 -0.6942 1.1575 22 1 -0.3634 -1.0275 0.0161 23 1 -0.3634 0.5278 0.8817 24 1 -0.3633 0.4997 -0.8980 25 1 0.6828 2.4569 2.7222 26 1 2.3661 -0.0415 -2.0177 27 1 1.3018 -1.4349 -1.6312 28 1 4.1704 -0.8990 -0.6738 29 1 3.4485 -2.4457 -1.2350 30 1 2.4196 -3.8807 0.1525 31 1 0.9363 -2.9328 0.5023 32 1 1.8936 -4.5872 2.4075 33 1 1.3588 -2.9459 2.8833 34 1 5.6524 -3.5271 2.0685 35 1 4.4048 -4.1102 0.8424 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306410973.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:11 Heat of formation + Delta-G solvation = -37.577139 kcal Electronic energy + Delta-G solvation = -16291.839587 eV Core-core repulsion = 13868.689782 eV Total energy + Delta-G solvation = -2423.149806 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.42565 -38.55481 -34.76888 -32.73695 -31.93087 -31.02576 -27.45742 -26.95303 -24.40771 -23.28079 -21.39320 -20.59249 -19.84532 -18.54646 -17.45188 -16.58723 -15.90292 -15.56588 -15.38054 -14.68080 -14.40995 -13.66798 -13.55629 -13.41580 -13.17417 -13.14367 -12.76336 -12.63993 -12.27165 -12.18028 -12.03416 -11.99363 -11.87835 -11.37703 -11.12098 -11.06518 -10.85143 -10.54229 -10.23685 -9.63942 -8.00406 -6.23263 1.38571 1.39917 1.49252 2.42934 2.72669 3.16220 3.46983 3.75708 3.86485 4.12817 4.14092 4.28820 4.34308 4.40421 4.46670 4.69624 4.79004 4.82237 4.85146 4.92498 5.00310 5.07456 5.07589 5.14327 5.24847 5.26895 5.34524 5.37462 5.43307 5.54054 5.61091 5.72815 6.13421 6.38457 6.72256 7.25736 7.53424 8.99574 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.034528 B = 0.010087 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.745186 B = 2775.214078 C = 2923.856478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.214 3.786 3 C -0.548 4.548 4 H 0.051 0.949 5 C 0.032 3.968 6 N -0.890 5.890 7 Si 0.946 3.054 8 H -0.272 1.272 9 H -0.286 1.286 10 H -0.271 1.271 11 C -0.139 4.139 12 C -0.127 4.127 13 C 0.119 3.881 14 C -0.134 4.134 15 C -0.085 4.085 16 C -0.172 4.172 17 H 0.108 0.892 18 C -0.112 4.112 19 C -0.185 4.185 20 H 0.081 0.919 21 O -0.368 6.368 22 H 0.027 0.973 23 H 0.058 0.942 24 H 0.039 0.961 25 H 0.256 0.744 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.118 0.882 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.557 -10.743 -2.566 11.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.177 3.823 3 C -0.586 4.586 4 H 0.069 0.931 5 C -0.170 4.170 6 N -0.527 5.527 7 Si 0.772 3.228 8 H -0.198 1.198 9 H -0.212 1.212 10 H -0.196 1.196 11 C -0.176 4.176 12 C -0.164 4.164 13 C 0.079 3.921 14 C -0.172 4.172 15 C -0.122 4.122 16 C -0.191 4.191 17 H 0.126 0.874 18 C -0.149 4.149 19 C -0.203 4.203 20 H 0.100 0.900 21 O -0.288 6.288 22 H 0.046 0.954 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.136 0.864 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.404 -10.614 -2.190 11.698 hybrid contribution 0.100 1.538 0.194 1.554 sum 4.504 -9.076 -1.996 10.326 Atomic orbital electron populations 1.21886 0.97886 0.98056 1.01212 1.19795 0.90743 0.90012 0.81764 1.21625 1.31958 0.96683 1.08315 0.93089 1.25711 0.94587 1.01721 0.94983 1.70107 1.35629 1.36017 1.10975 0.85774 0.78999 0.80974 0.77101 1.19760 1.21215 1.19561 1.23156 0.97502 0.98549 0.98417 1.22912 0.97518 1.00257 0.95742 1.21733 0.89665 0.88329 0.92420 1.22895 1.00069 0.96925 0.97299 1.21862 0.93898 1.00968 0.95490 1.23250 0.94819 1.04403 0.96580 0.87426 1.22956 0.96911 0.94513 1.00522 1.23002 1.00906 0.93338 1.03086 0.90026 1.88530 1.67979 1.39523 1.32726 0.95398 0.92345 0.94180 0.93469 0.91857 0.91323 0.92529 0.88700 0.88679 0.92501 0.89507 0.93403 0.86409 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.66 8.53 71.98 0.61 -6.05 16 2 C 0.21 10.93 0.83 -11.04 -0.01 10.92 16 3 C -0.55 -31.01 8.23 25.60 0.21 -30.80 16 4 H 0.05 2.85 7.48 -2.91 -0.02 2.82 16 5 C 0.03 1.82 5.26 84.65 0.45 2.27 16 6 N -0.89 -53.30 10.92 21.45 0.23 -53.06 16 7 Si 0.95 44.87 29.54 68.60 2.03 46.90 16 8 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 9 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 C -0.14 -5.73 5.98 31.96 0.19 -5.54 16 12 C -0.13 -4.67 6.09 31.74 0.19 -4.48 16 13 C 0.12 4.75 0.82 -10.04 -0.01 4.74 16 14 C -0.13 -4.43 5.50 31.70 0.17 -4.26 16 15 C -0.08 -2.66 6.77 31.85 0.22 -2.45 16 16 C -0.17 -5.29 7.07 -9.96 -0.07 -5.36 16 17 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 18 C -0.11 -2.85 9.83 30.59 0.30 -2.54 16 19 C -0.18 -6.69 6.19 -10.22 -0.06 -6.76 16 20 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 21 O -0.37 -19.26 9.69 -148.98 -1.44 -20.70 16 22 H 0.03 1.24 7.98 -2.39 -0.02 1.22 16 23 H 0.06 3.31 6.01 -2.39 -0.01 3.29 16 24 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 26 H 0.06 2.60 7.61 -2.39 -0.02 2.58 16 27 H 0.07 2.53 7.85 -2.39 -0.02 2.52 16 28 H 0.06 2.20 8.09 -2.39 -0.02 2.19 16 29 H 0.09 2.76 7.79 -2.39 -0.02 2.74 16 30 H 0.09 2.50 7.08 -2.39 -0.02 2.48 16 31 H 0.06 2.03 7.98 -2.39 -0.02 2.01 16 32 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.11 2.34 7.21 -2.39 -0.02 2.32 16 Total: -1.00 -64.88 274.78 4.06 -60.82 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.05 Total: 16.35 kcal Atomic # 6 Polarization: -52.50 SS G_CDS: 2.19 Total: -50.30 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.23 Total: -53.06 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -1.44 Total: -20.70 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -64.88 4.06 -60.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306410973.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.240 kcal (2) G-P(sol) polarization free energy of solvation -64.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds