Wall clock time and date at job start Mon Mar 30 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48499 * 109.46973 * 269.99629 * 3 2 1 5 5 H 1.48500 * 109.46970 * 29.99769 * 3 2 1 6 6 H 1.48506 * 109.47072 * 150.00000 * 3 2 1 7 7 C 1.37881 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00006 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.35501 * 60.68577 * 9 7 2 11 11 C 1.54940 * 110.31016 * 182.83184 * 9 7 2 12 12 C 1.55300 * 100.94415 * 155.35699 * 11 9 7 13 13 C 1.54377 * 102.25502 * 325.86750 * 12 11 9 14 14 C 1.53001 * 109.83334 * 261.84318 * 13 12 11 15 15 C 1.52999 * 117.50374 * 127.45092 * 14 13 12 16 16 C 1.52996 * 60.00261 * 252.51572 * 15 14 13 17 17 C 1.52992 * 109.83433 * 140.86609 * 13 12 11 18 18 C 1.53005 * 117.49873 * 14.79203 * 17 13 12 19 19 C 1.53000 * 59.99957 * 252.50564 * 18 17 13 20 20 O 1.43245 * 107.58529 * 21.35358 * 13 12 11 21 21 H 0.96997 * 120.00294 * 0.02562 * 1 2 3 22 22 H 1.09007 * 111.12756 * 37.43650 * 11 9 7 23 23 H 1.09003 * 111.16152 * 273.29338 * 11 9 7 24 24 H 1.09006 * 110.85287 * 207.67375 * 12 11 9 25 25 H 1.09007 * 110.84948 * 84.05944 * 12 11 9 26 26 H 1.08995 * 115.55175 * 273.16840 * 14 13 12 27 27 H 1.09002 * 117.49362 * 0.02562 * 15 14 13 28 28 H 1.08992 * 117.50172 * 145.02138 * 15 14 13 29 29 H 1.09001 * 117.49892 * 252.51411 * 16 15 14 30 30 H 1.09001 * 117.50380 * 107.49205 * 16 15 14 31 31 H 1.09005 * 115.55352 * 160.49221 * 17 13 12 32 32 H 1.08997 * 117.49469 * 359.97438 * 18 17 13 33 33 H 1.09001 * 117.49729 * 145.01696 * 18 17 13 34 34 H 1.08994 * 117.50242 * 252.50991 * 19 18 17 35 35 H 1.08995 * 117.49720 * 107.48310 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6286 -2.5776 -0.8907 11 6 2.2390 -3.6906 0.0730 12 6 1.3336 -4.7868 0.6978 13 6 0.4291 -3.9659 1.6418 14 6 0.9703 -4.0371 3.0711 15 6 1.2024 -2.7150 3.8054 16 6 2.3957 -3.5361 3.3125 17 6 -0.9990 -4.5129 1.5980 18 6 -1.2080 -5.8929 0.9711 19 6 -1.6663 -4.6372 0.2267 20 8 0.4439 -2.6088 1.1836 21 1 -0.4850 0.8400 -0.0004 22 1 3.0838 -3.4615 0.7226 23 1 2.5786 -3.9811 -0.9212 24 1 1.9281 -5.5073 1.2595 25 1 0.7419 -5.2853 -0.0701 26 1 0.6292 -4.8877 3.6612 27 1 0.9692 -1.7945 3.2702 28 1 1.0138 -2.6956 4.8787 29 1 2.9921 -4.0569 4.0617 30 1 2.9479 -3.1557 2.4531 31 1 -1.6322 -4.2426 2.4431 32 1 -0.3281 -6.4108 0.5896 33 1 -1.9787 -6.5308 1.4039 34 1 -2.7383 -4.4489 0.1698 35 1 -1.0877 -4.3292 -0.6441 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306701467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:07 Heat of formation + Delta-G solvation = 6.949806 kcal Electronic energy + Delta-G solvation = -16211.961343 eV Core-core repulsion = 13790.742370 eV Total energy + Delta-G solvation = -2421.218972 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.56615 -35.92479 -35.19900 -32.36341 -30.81315 -28.41493 -25.30897 -22.68263 -21.83395 -21.55979 -20.69301 -20.25692 -18.28542 -16.58986 -16.03445 -14.84246 -14.76710 -14.52950 -14.26770 -13.12995 -12.62347 -12.50612 -12.03410 -11.71331 -11.51269 -11.07573 -10.91830 -10.67520 -10.63253 -10.49389 -10.36642 -10.10969 -9.94919 -9.86998 -9.74481 -9.27062 -9.09771 -8.93422 -8.52309 -7.82064 -5.96189 -4.09145 3.31965 3.39284 3.42263 4.26477 4.45016 4.46867 5.03194 5.19593 5.38337 5.43996 5.51710 5.61298 5.64545 5.72891 5.76956 5.90775 5.91523 6.01077 6.20505 6.27128 6.31456 6.44566 6.51940 6.53407 6.63734 6.72475 6.80563 6.85195 6.92779 7.00795 7.19234 7.64832 7.92687 8.31885 8.71194 9.10390 9.61442 11.10559 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.029896 B = 0.010697 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.369762 B = 2616.957051 C = 2934.327610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.080 3.920 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.213 3.787 10 H 0.023 0.977 11 C -0.151 4.151 12 C -0.150 4.150 13 C 0.159 3.841 14 C -0.152 4.152 15 C -0.163 4.163 16 C -0.182 4.182 17 C -0.139 4.139 18 C -0.194 4.194 19 C -0.165 4.165 20 O -0.336 6.336 21 H 0.260 0.740 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.295 -9.098 3.366 9.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.079 0.921 9 C 0.158 3.842 10 H 0.041 0.959 11 C -0.189 4.189 12 C -0.187 4.187 13 C 0.118 3.882 14 C -0.171 4.171 15 C -0.200 4.200 16 C -0.219 4.219 17 C -0.158 4.158 18 C -0.231 4.231 19 C -0.202 4.202 20 O -0.255 6.255 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.134 0.866 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.019 -8.811 3.460 9.466 hybrid contribution 0.457 0.697 0.020 0.833 sum 0.476 -8.114 3.481 8.842 Atomic orbital electron populations 1.70045 1.05892 1.26367 1.47275 1.25038 0.94702 0.99027 0.93827 0.86709 0.80105 0.83769 0.78045 1.20661 1.21152 1.19789 1.21080 0.92546 0.90144 1.53298 0.92138 1.20467 0.86624 0.92063 0.85069 0.95890 1.23443 0.99431 0.96492 0.99484 1.23264 0.98231 0.98438 0.98793 1.20706 0.90020 0.86385 0.91073 1.22481 0.99257 0.98058 0.97295 1.22863 1.01847 0.97073 0.98214 1.22963 0.90946 1.04522 1.03423 1.22480 0.98345 0.98011 0.96920 1.23133 1.03104 0.91088 1.05757 1.22764 1.00315 1.00604 0.96547 1.88847 1.71343 1.20237 1.45047 0.93048 0.91402 0.92393 0.91763 0.91221 0.88830 0.86617 0.90637 0.90409 0.87843 0.88467 0.88550 0.89710 0.89486 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.42 12.93 55.43 0.72 -24.70 16 2 C 0.08 2.25 5.42 -17.82 -0.10 2.16 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.79 8.81 -34.44 -0.30 -15.09 16 8 H 0.06 1.64 7.77 -52.48 -0.41 1.23 16 9 C 0.21 5.41 3.27 -26.86 -0.09 5.32 16 10 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 11 C -0.15 -3.13 6.07 -24.49 -0.15 -3.28 16 12 C -0.15 -2.72 4.79 -24.79 -0.12 -2.84 16 13 C 0.16 3.16 0.93 -89.90 -0.08 3.08 16 14 C -0.15 -2.77 5.01 -90.62 -0.45 -3.23 16 15 C -0.16 -3.11 9.88 -26.73 -0.26 -3.37 16 16 C -0.18 -3.25 9.76 -26.73 -0.26 -3.51 16 17 C -0.14 -2.52 5.38 -90.62 -0.49 -3.00 16 18 C -0.19 -2.88 9.59 -26.73 -0.26 -3.14 16 19 C -0.17 -2.87 9.75 -26.73 -0.26 -3.13 16 20 O -0.34 -8.40 8.24 -35.23 -0.29 -8.69 16 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 22 H 0.07 1.41 5.94 -51.93 -0.31 1.10 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.06 1.05 7.82 -51.93 -0.41 0.64 16 25 H 0.07 1.20 4.99 -51.93 -0.26 0.94 16 26 H 0.09 1.51 8.12 -51.93 -0.42 1.09 16 27 H 0.12 2.66 7.09 -51.93 -0.37 2.30 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.10 2.06 5.57 -51.93 -0.29 1.77 16 31 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 32 H 0.10 1.37 5.94 -51.93 -0.31 1.06 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.09 1.81 7.61 -51.93 -0.40 1.41 16 LS Contribution 276.82 15.07 4.17 4.17 Total: -1.00 -29.23 276.82 -8.50 -37.73 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.26 Total: 5.12 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: -2.82 Total: -30.02 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.72 Total: -24.70 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.29 Total: -8.69 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.23 -8.50 -37.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306701467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.678 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds