Wall clock time and date at job start Mon Mar 30 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48499 * 109.46973 * 269.99629 * 3 2 1 5 5 H 1.48500 * 109.46970 * 29.99769 * 3 2 1 6 6 H 1.48506 * 109.47072 * 150.00000 * 3 2 1 7 7 C 1.37881 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00006 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.35501 * 60.68577 * 9 7 2 11 11 C 1.54940 * 110.31016 * 182.83184 * 9 7 2 12 12 C 1.55300 * 100.94415 * 155.35699 * 11 9 7 13 13 C 1.54377 * 102.25502 * 325.86750 * 12 11 9 14 14 C 1.53001 * 109.83334 * 261.84318 * 13 12 11 15 15 C 1.52999 * 117.50374 * 127.45092 * 14 13 12 16 16 C 1.52996 * 60.00261 * 252.51572 * 15 14 13 17 17 C 1.52992 * 109.83433 * 140.86609 * 13 12 11 18 18 C 1.53005 * 117.49873 * 14.79203 * 17 13 12 19 19 C 1.53000 * 59.99957 * 252.50564 * 18 17 13 20 20 O 1.43245 * 107.58529 * 21.35358 * 13 12 11 21 21 H 0.96997 * 120.00294 * 0.02562 * 1 2 3 22 22 H 1.09007 * 111.12756 * 37.43650 * 11 9 7 23 23 H 1.09003 * 111.16152 * 273.29338 * 11 9 7 24 24 H 1.09006 * 110.85287 * 207.67375 * 12 11 9 25 25 H 1.09007 * 110.84948 * 84.05944 * 12 11 9 26 26 H 1.08995 * 115.55175 * 273.16840 * 14 13 12 27 27 H 1.09002 * 117.49362 * 0.02562 * 15 14 13 28 28 H 1.08992 * 117.50172 * 145.02138 * 15 14 13 29 29 H 1.09001 * 117.49892 * 252.51411 * 16 15 14 30 30 H 1.09001 * 117.50380 * 107.49205 * 16 15 14 31 31 H 1.09005 * 115.55352 * 160.49221 * 17 13 12 32 32 H 1.08997 * 117.49469 * 359.97438 * 18 17 13 33 33 H 1.09001 * 117.49729 * 145.01696 * 18 17 13 34 34 H 1.08994 * 117.50242 * 252.50991 * 19 18 17 35 35 H 1.08995 * 117.49720 * 107.48310 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6286 -2.5776 -0.8907 11 6 2.2390 -3.6906 0.0730 12 6 1.3336 -4.7868 0.6978 13 6 0.4291 -3.9659 1.6418 14 6 0.9703 -4.0371 3.0711 15 6 1.2024 -2.7150 3.8054 16 6 2.3957 -3.5361 3.3125 17 6 -0.9990 -4.5129 1.5980 18 6 -1.2080 -5.8929 0.9711 19 6 -1.6663 -4.6372 0.2267 20 8 0.4439 -2.6088 1.1836 21 1 -0.4850 0.8400 -0.0004 22 1 3.0838 -3.4615 0.7226 23 1 2.5786 -3.9811 -0.9212 24 1 1.9281 -5.5073 1.2595 25 1 0.7419 -5.2853 -0.0701 26 1 0.6292 -4.8877 3.6612 27 1 0.9692 -1.7945 3.2702 28 1 1.0138 -2.6956 4.8787 29 1 2.9921 -4.0569 4.0617 30 1 2.9479 -3.1557 2.4531 31 1 -1.6322 -4.2426 2.4431 32 1 -0.3281 -6.4108 0.5896 33 1 -1.9787 -6.5308 1.4039 34 1 -2.7383 -4.4489 0.1698 35 1 -1.0877 -4.3292 -0.6441 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306701467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:07 Heat of formation + Delta-G solvation = -9.087395 kcal Electronic energy + Delta-G solvation = -16212.656768 eV Core-core repulsion = 13790.742370 eV Total energy + Delta-G solvation = -2421.914398 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.13981 -37.33276 -36.83904 -34.45813 -32.52289 -30.17638 -27.18350 -24.32989 -23.19132 -23.04085 -22.23749 -21.90881 -19.83351 -18.60811 -17.61292 -16.73436 -16.35659 -16.04861 -15.87330 -14.74225 -14.47823 -14.13635 -13.65582 -13.51002 -13.07162 -12.83971 -12.50542 -12.41255 -12.16726 -12.09615 -11.99895 -11.95878 -11.46706 -11.31374 -11.20655 -10.91530 -10.69742 -10.64889 -10.49788 -9.68717 -8.11417 -6.31191 1.38228 1.39695 1.49858 2.40766 2.83171 3.05134 3.18205 3.67656 3.78316 4.00198 4.04193 4.18581 4.24202 4.28026 4.36721 4.39780 4.40727 4.68139 4.76289 4.84092 4.86978 4.94034 5.03333 5.09325 5.16480 5.24335 5.29715 5.31463 5.43402 5.49554 5.59629 5.67259 5.81035 6.24083 6.66911 7.18950 7.45052 8.95729 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.029896 B = 0.010697 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.369762 B = 2616.957051 C = 2934.327610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.210 3.790 10 H -0.017 1.017 11 C -0.144 4.144 12 C -0.137 4.137 13 C 0.143 3.857 14 C -0.146 4.146 15 C -0.177 4.177 16 C -0.171 4.171 17 C -0.163 4.163 18 C -0.150 4.150 19 C -0.185 4.185 20 O -0.367 6.367 21 H 0.259 0.741 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.126 0.874 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.131 -11.106 4.501 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.588 4.588 8 H 0.078 0.922 9 C 0.154 3.846 10 H 0.001 0.999 11 C -0.182 4.182 12 C -0.174 4.174 13 C 0.103 3.897 14 C -0.164 4.164 15 C -0.214 4.214 16 C -0.207 4.207 17 C -0.182 4.182 18 C -0.187 4.187 19 C -0.222 4.222 20 O -0.286 6.286 21 H 0.068 0.932 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.112 0.888 25 H 0.098 0.902 26 H 0.144 0.856 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.132 0.868 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.869 -10.831 4.591 11.796 hybrid contribution 0.160 1.302 -0.338 1.354 sum 1.030 -9.530 4.253 10.486 Atomic orbital electron populations 1.70189 1.07519 1.27039 1.48862 1.25855 0.95487 1.02650 0.93521 0.85666 0.78853 0.79332 0.78420 1.19632 1.21080 1.19010 1.21483 0.92797 0.91722 1.52759 0.92169 1.20242 0.86983 0.93232 0.84111 0.99898 1.23316 0.98766 0.95561 1.00523 1.23231 0.97585 0.97826 0.98760 1.21070 0.91797 0.84427 0.92393 1.22583 0.99282 0.98249 0.96333 1.22722 1.03773 0.95628 0.99314 1.22972 0.90765 1.03810 1.03175 1.22472 0.97338 1.01270 0.97073 1.23216 1.03721 0.89498 1.02222 1.22746 1.00404 1.03593 0.95484 1.88771 1.71484 1.23902 1.44488 0.93232 0.91377 0.91252 0.88827 0.90244 0.85640 0.91661 0.87868 0.86813 0.90367 0.88725 0.87259 0.86702 0.88794 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.45 12.93 21.45 0.28 -55.17 16 2 C 0.03 1.56 5.42 84.66 0.46 2.02 16 3 Si 0.95 45.06 29.54 68.60 2.03 47.09 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.55 -31.53 8.81 25.60 0.23 -31.31 16 8 H 0.06 3.34 7.77 -2.91 -0.02 3.32 16 9 C 0.21 11.07 3.27 30.51 0.10 11.17 16 10 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 11 C -0.14 -5.94 6.07 32.05 0.19 -5.74 16 12 C -0.14 -4.70 4.79 31.85 0.15 -4.54 16 13 C 0.14 5.57 0.93 -10.33 -0.01 5.56 16 14 C -0.15 -5.00 5.01 -10.79 -0.05 -5.05 16 15 C -0.18 -6.64 9.88 30.59 0.30 -6.34 16 16 C -0.17 -5.73 9.76 30.59 0.30 -5.43 16 17 C -0.16 -5.69 5.38 -10.79 -0.06 -5.74 16 18 C -0.15 -3.94 9.59 30.60 0.29 -3.65 16 19 C -0.19 -6.34 9.75 30.59 0.30 -6.04 16 20 O -0.37 -18.98 8.24 -148.98 -1.23 -20.21 16 21 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 22 H 0.07 2.79 5.94 -2.38 -0.01 2.78 16 23 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 24 H 0.09 2.68 7.82 -2.38 -0.02 2.66 16 25 H 0.08 2.56 4.99 -2.38 -0.01 2.55 16 26 H 0.13 3.51 8.12 -2.39 -0.02 3.49 16 27 H 0.06 3.13 7.09 -2.39 -0.02 3.12 16 28 H 0.10 3.21 8.14 -2.39 -0.02 3.20 16 29 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.08 3.05 5.57 -2.39 -0.01 3.04 16 31 H 0.09 3.30 8.14 -2.38 -0.02 3.29 16 32 H 0.11 2.62 5.94 -2.39 -0.01 2.61 16 33 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.07 2.74 7.61 -2.39 -0.02 2.72 16 Total: -1.00 -66.27 276.82 4.34 -61.93 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 1.07 Total: 21.47 kcal Atomic # 6 Polarization: -57.30 SS G_CDS: 2.20 Total: -55.10 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.28 Total: -55.17 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -1.23 Total: -20.21 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -66.27 4.34 -61.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306701467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.841 kcal (2) G-P(sol) polarization free energy of solvation -66.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds