Wall clock time and date at job start Mon Mar 30 2020 02:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38809 * 119.99417 * 2 1 4 4 C 1.38561 * 118.04393 * 180.02562 * 3 2 1 5 5 C 1.39486 * 117.89911 * 0.02562 * 4 3 2 6 6 N 1.39047 * 120.15547 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00067 * 359.97438 * 6 5 4 8 8 C 1.53003 * 109.47258 * 180.02562 * 7 6 5 9 9 N 1.46497 * 109.47258 * 180.02562 * 8 7 6 10 10 C 1.36936 * 120.00054 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.38815 * 120.00100 * 180.02562 * 10 9 8 13 13 N 1.31619 * 120.00112 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99856 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47616 * 60.00049 * 14 12 10 16 16 H 1.48508 * 109.47054 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47157 * 299.99944 * 14 12 10 18 18 N 1.32486 * 119.68454 * 0.02562 * 5 4 3 19 19 N 1.28345 * 122.07485 * 359.97438 * 18 5 4 20 20 H 1.09002 * 109.47349 * 269.97897 * 1 2 3 21 21 H 1.09000 * 109.47043 * 29.97998 * 1 2 3 22 22 H 1.09006 * 109.47315 * 149.97464 * 1 2 3 23 23 H 1.08002 * 120.98242 * 359.97438 * 3 2 1 24 24 H 1.07993 * 121.05343 * 180.02562 * 4 3 2 25 25 H 0.96997 * 120.00130 * 179.97438 * 6 5 4 26 26 H 1.09005 * 109.47461 * 300.00179 * 7 6 5 27 27 H 1.09003 * 109.47521 * 60.00348 * 7 6 5 28 28 H 1.09004 * 109.47080 * 299.99879 * 8 7 6 29 29 H 1.09002 * 109.47341 * 59.99890 * 8 7 6 30 30 H 0.96998 * 120.00391 * 359.97438 * 9 8 7 31 31 H 0.97001 * 120.00424 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2022 0.0000 4 6 3.5857 1.1550 -0.0005 5 6 4.1961 -0.0992 -0.0016 6 7 5.5828 -0.2012 -0.0027 7 6 6.4064 1.0103 -0.0034 8 6 7.8861 0.6212 -0.0052 9 7 8.7097 1.8327 -0.0052 10 6 10.0754 1.7323 -0.0062 11 1 10.5453 0.7599 -0.0074 12 6 10.8558 2.8803 -0.0057 13 7 10.2831 4.0654 -0.0037 14 14 12.7187 2.7432 -0.0078 15 1 13.1598 2.0101 -1.2215 16 1 13.3151 4.1032 -0.0074 17 1 13.1622 2.0073 1.2034 18 7 3.4482 -1.1928 -0.0026 19 7 2.1658 -1.1415 -0.0021 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5142 23 1 1.6769 2.1466 -0.0004 24 1 4.1739 2.0607 -0.0002 25 1 6.0049 -1.0745 -0.0031 26 1 6.1850 1.5998 -0.8932 27 1 6.1865 1.5997 0.8868 28 1 8.1078 0.0316 0.8844 29 1 8.1058 0.0321 -0.8956 30 1 8.2877 2.7061 -0.0045 31 1 10.8284 4.8676 -0.0030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308720363.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:31 Heat of formation + Delta-G solvation = 67.168778 kcal Electronic energy + Delta-G solvation = -14046.325341 eV Core-core repulsion = 11556.470066 eV Total energy + Delta-G solvation = -2489.855274 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.89585 -36.99656 -34.66243 -33.58134 -32.18535 -30.91538 -28.50696 -26.58490 -24.40560 -23.75254 -22.27093 -21.33947 -18.05128 -17.38882 -16.99428 -15.48632 -15.46198 -14.80451 -14.60488 -14.46267 -13.91368 -13.29801 -13.14867 -13.11431 -12.92406 -12.43077 -11.91295 -11.20722 -11.15136 -10.87971 -10.85908 -10.43830 -10.19613 -10.12964 -9.84192 -9.49502 -8.99063 -7.90674 -7.07929 -5.87102 -3.17979 0.89636 1.22597 3.03703 3.39188 3.43728 3.44759 3.69019 4.30773 4.51657 4.62221 4.65937 4.80589 5.06572 5.26413 5.38962 5.40189 5.42754 5.57712 5.67573 5.71885 5.79508 5.97094 6.06973 6.20412 6.48951 6.58322 7.03855 7.57919 7.60878 8.30525 8.93661 9.42163 9.94702 10.29626 11.35452 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.088114 B = 0.004175 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.695118 B = 6705.537767 C = 6997.484325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.000 4.000 3 C -0.078 4.078 4 C -0.177 4.177 5 C 0.344 3.656 6 N -0.706 5.706 7 C 0.115 3.885 8 C 0.145 3.855 9 N -0.729 5.729 10 C -0.246 4.246 11 H 0.072 0.928 12 C -0.010 4.010 13 N -0.932 5.932 14 Si 0.911 3.089 15 H -0.285 1.285 16 H -0.290 1.290 17 H -0.285 1.285 18 N -0.313 5.313 19 N -0.205 5.205 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.146 0.854 24 H 0.148 0.852 25 H 0.409 0.591 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.385 0.615 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.598 -4.470 0.011 17.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.150 4.150 3 C -0.106 4.106 4 C -0.211 4.211 5 C 0.101 3.899 6 N -0.338 5.338 7 C -0.010 4.010 8 C 0.017 3.983 9 N -0.374 5.374 10 C -0.377 4.377 11 H 0.090 0.910 12 C -0.207 4.207 13 N -0.580 5.580 14 Si 0.742 3.258 15 H -0.211 1.211 16 H -0.216 1.216 17 H -0.211 1.211 18 N -0.164 5.164 19 N -0.047 5.047 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.094 0.906 23 H 0.163 0.837 24 H 0.166 0.834 25 H 0.245 0.755 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.219 0.781 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.323 -5.979 0.007 17.383 hybrid contribution 1.241 1.643 0.012 2.059 sum -15.082 -4.336 0.019 15.692 Atomic orbital electron populations 1.20488 0.88007 1.03311 1.02866 1.22505 0.98650 0.90502 1.03353 1.22046 0.93782 0.99556 0.95244 1.21931 0.95569 0.98156 1.05423 1.20097 0.87211 0.91498 0.91055 1.44436 1.00599 1.10243 1.78552 1.21712 0.91639 0.85941 1.01667 1.20715 0.86990 0.91696 0.98921 1.42143 1.03017 1.02387 1.89889 1.19158 0.82059 0.92822 1.43653 0.91001 1.24769 0.98274 0.95157 1.02476 1.69644 1.34532 0.96702 1.57154 0.86210 0.85053 0.76602 0.77959 1.21120 1.21568 1.21115 1.72956 0.99353 1.24700 1.19410 1.72633 1.00430 1.24902 1.06759 0.90757 0.90915 0.90596 0.83665 0.83386 0.75455 0.91489 0.91483 0.95450 0.95447 0.78112 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.19 36.01 0.37 -0.33 16 2 C 0.00 0.00 6.87 -82.40 -0.57 -0.56 16 3 C -0.08 -0.83 9.86 -39.25 -0.39 -1.22 16 4 C -0.18 -2.22 9.42 -39.00 -0.37 -2.59 16 5 C 0.34 5.06 7.75 -154.77 -1.20 3.86 16 6 N -0.71 -10.04 5.73 -60.29 -0.35 -10.39 16 7 C 0.11 1.75 5.03 -4.04 -0.02 1.73 16 8 C 0.14 2.74 6.37 -4.04 -0.03 2.72 16 9 N -0.73 -17.79 5.60 -59.91 -0.34 -18.13 16 10 C -0.25 -6.74 9.99 -15.06 -0.15 -6.89 16 11 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 12 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 13 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 14 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 N -0.31 -5.04 11.53 31.23 0.36 -4.68 16 19 N -0.21 -3.10 11.41 33.61 0.38 -2.72 16 20 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 22 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 24 H 0.15 1.65 6.84 -52.49 -0.36 1.29 16 25 H 0.41 5.53 8.60 -40.82 -0.35 5.18 16 26 H 0.07 1.01 7.97 -51.93 -0.41 0.60 16 27 H 0.07 1.01 7.96 -51.93 -0.41 0.60 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.39 9.74 7.67 -40.82 -0.31 9.42 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 273.09 15.07 4.12 4.12 Total: -1.00 -31.46 273.09 -6.50 -37.96 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -3.93 Total: 7.35 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.44 Total: -3.68 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: 0.79 Total: -62.69 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.46 -6.50 -37.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308720363.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.125 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds