Wall clock time and date at job start Mon Mar 30 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46903 * 109.47482 * 119.99820 * 2 1 3 13 13 C 1.46898 * 111.00250 * 275.00495 * 12 2 1 14 14 C 1.50699 * 109.47159 * 179.97438 * 13 12 2 15 15 C 1.40063 * 120.23548 * 90.00013 * 14 13 12 16 16 N 1.31393 * 120.24862 * 179.97438 * 15 14 13 17 17 C 1.34340 * 120.77281 * 0.02562 * 16 15 14 18 18 N 1.31437 * 119.76685 * 180.02562 * 17 16 15 19 19 N 1.37497 * 120.45852 * 359.97438 * 17 16 15 20 20 H 0.97006 * 120.12787 * 180.02562 * 19 17 16 21 21 C 1.35712 * 120.23649 * 269.72431 * 14 13 12 22 22 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 23 23 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 24 24 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 25 25 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 26 26 H 1.00899 * 110.99621 * 151.04500 * 12 2 1 27 27 H 1.08998 * 109.46833 * 300.00296 * 13 12 2 28 28 H 1.09006 * 109.47097 * 59.99750 * 13 12 2 29 29 H 1.07998 * 119.87749 * 359.97438 * 15 14 13 30 30 H 0.96998 * 119.99918 * 359.97438 * 18 17 16 31 31 H 1.08002 * 120.37398 * 359.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 3.6305 -0.5437 -4.4119 10 1 2.4881 -2.5651 -3.7122 11 1 1.3445 -0.9488 -5.1123 12 7 2.0198 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5874 -0.5218 3.5560 15 6 3.9605 -0.5782 3.8269 16 7 4.4010 -1.2268 4.8813 17 6 3.5473 -1.8449 5.7143 18 7 4.0095 -2.4875 6.7636 19 7 2.1933 -1.8090 5.4774 20 1 1.5812 -2.2566 6.0823 21 6 1.7147 -1.1376 4.3932 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 0.7087 1.1613 -3.4844 26 1 2.9174 -1.1204 1.0286 27 1 2.7588 1.0462 2.1182 28 1 1.0870 0.6162 2.5526 29 1 4.6597 -0.0868 3.1667 30 1 4.9640 -2.5146 6.9340 31 1 0.6528 -1.0987 4.2000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379508497.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:21 Heat of formation + Delta-G solvation = 63.832221 kcal Electronic energy + Delta-G solvation = -14509.710103 eV Core-core repulsion = 12019.710144 eV Total energy + Delta-G solvation = -2489.999958 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.83027 -36.38639 -34.51964 -34.29360 -32.47431 -30.37586 -27.85192 -25.36844 -24.98161 -23.98825 -22.23786 -19.85240 -18.17692 -17.82759 -16.79815 -16.45114 -15.13256 -14.88248 -14.58680 -14.10229 -13.73861 -13.57859 -12.90425 -12.25861 -11.92766 -11.41450 -11.29424 -10.98172 -10.90461 -10.55170 -10.36039 -10.20243 -10.09539 -9.84207 -9.54660 -8.90509 -8.53331 -7.62783 -7.36051 -6.08315 -4.14920 0.76914 1.79265 2.70545 3.26363 3.33602 3.37297 3.78017 4.36389 4.38626 4.58966 4.87433 5.05604 5.23346 5.49059 5.58665 5.77706 5.96862 6.15173 6.24877 6.44575 6.79026 7.04352 7.06180 7.13989 7.40968 7.72260 7.81456 7.88111 8.19946 8.29202 8.44296 8.57451 8.94900 9.51638 10.97822 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.051445 B = 0.005492 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.141207 B = 5097.043416 C = 5369.109445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.210 3.790 3 H 0.003 0.997 4 C -0.520 4.520 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.687 5.687 13 C 0.118 3.882 14 C -0.253 4.253 15 C 0.255 3.745 16 N -0.565 5.565 17 C 0.535 3.465 18 N -0.784 5.784 19 N -0.613 5.613 20 H 0.422 0.578 21 C 0.204 3.796 22 H 0.004 0.996 23 H 0.081 0.919 24 H 0.031 0.969 25 H 0.261 0.739 26 H 0.332 0.668 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.165 0.835 30 H 0.351 0.649 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 -0.641 10.644 10.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.021 0.979 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.318 5.318 13 C -0.013 4.013 14 C -0.265 4.265 15 C 0.066 3.934 16 N -0.286 5.286 17 C 0.166 3.834 18 N -0.425 5.425 19 N -0.231 5.231 20 H 0.259 0.741 21 C 0.066 3.934 22 H 0.023 0.977 23 H 0.099 0.901 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.149 0.851 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.182 0.818 30 H 0.169 0.831 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.160 -1.518 11.875 11.972 hybrid contribution 0.761 0.340 -1.620 1.822 sum 0.921 -1.178 10.255 10.363 Atomic orbital electron populations 1.21723 0.97864 0.99320 0.99399 1.19130 0.92615 0.92443 0.85494 0.97919 1.21247 1.31548 1.12590 0.90424 0.92226 1.24907 0.94974 0.94980 0.99056 1.69889 1.36510 1.22895 1.23540 0.86531 0.78507 0.80087 0.82485 1.20723 1.19865 1.21209 1.60853 1.32285 1.32836 1.05841 1.20545 0.99913 0.92845 0.87970 1.20199 0.93784 1.10418 1.02068 1.23500 0.93901 0.85966 0.90064 1.69970 1.34894 1.15941 1.07777 1.20192 0.80974 0.91060 0.91208 1.69897 1.23237 1.30031 1.19298 1.42364 1.07738 1.47937 1.25110 0.74053 1.22289 1.00547 0.86754 0.83808 0.97709 0.90085 0.94986 0.92888 0.85099 0.94738 0.90830 0.81787 0.83135 0.80577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 9.19 37.16 0.34 -2.52 16 2 C 0.21 4.90 2.60 -68.87 -0.18 4.72 16 3 H 0.00 0.08 7.80 -51.93 -0.40 -0.32 16 4 C -0.52 -13.52 8.59 -34.44 -0.30 -13.81 16 5 H 0.06 1.54 7.62 -52.49 -0.40 1.14 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.42 11.32 55.43 0.63 -23.79 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.69 -12.86 6.29 -109.22 -0.69 -13.55 16 13 C 0.12 1.73 5.62 -4.98 -0.03 1.70 16 14 C -0.25 -3.16 5.37 -104.84 -0.56 -3.72 16 15 C 0.26 3.30 10.96 -17.06 -0.19 3.11 16 16 N -0.56 -8.37 10.47 -13.79 -0.14 -8.51 16 17 C 0.53 7.84 8.69 -323.04 -2.81 5.04 16 18 N -0.78 -12.13 14.19 29.72 0.42 -11.71 16 19 N -0.61 -6.90 5.42 -13.78 -0.07 -6.98 16 20 H 0.42 3.74 8.93 -40.82 -0.36 3.38 16 21 C 0.20 2.17 10.94 -16.51 -0.18 1.98 16 22 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 23 H 0.08 2.07 6.07 -51.93 -0.32 1.75 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.33 6.23 8.22 -39.29 -0.32 5.90 16 27 H 0.03 0.51 8.01 -51.93 -0.42 0.09 16 28 H 0.07 1.05 7.37 -51.93 -0.38 0.66 16 29 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.35 5.28 8.90 -40.82 -0.36 4.92 16 31 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 268.76 15.07 4.05 4.05 Total: -1.00 -29.99 268.76 -8.58 -38.57 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -3.76 Total: 8.28 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -3.99 Total: -1.93 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.14 Total: -64.54 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.99 -8.58 -38.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379508497.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.400 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds