Wall clock time and date at job start Mon Mar 30 2020 03:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 115.54982 * 2 1 4 4 N 1.46902 * 109.46626 * 34.32986 * 3 2 1 5 5 C 1.46905 * 110.99800 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47234 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.46965 * 305.00257 * 6 5 4 8 8 C 1.47201 * 109.47129 * 65.00133 * 6 5 4 9 9 N 5.62774 * 85.21309 * 47.14849 * 2 1 3 10 10 C 1.53003 * 109.46996 * 185.00028 * 6 5 4 11 11 C 1.50695 * 109.47067 * 175.00166 * 10 6 5 12 12 H 1.08012 * 119.99922 * 359.97438 * 11 10 6 13 13 C 1.37875 * 120.00495 * 180.02562 * 11 10 6 14 14 N 1.31509 * 120.00525 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99331 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46981 * 90.01033 * 15 13 11 17 17 H 1.48501 * 109.46915 * 210.00246 * 15 13 11 18 18 H 1.48496 * 109.47750 * 330.00520 * 15 13 11 19 19 C 1.52999 * 117.52025 * 145.70070 * 2 1 3 20 20 C 1.53000 * 117.50095 * 214.33426 * 2 1 3 21 21 H 1.09004 * 109.47548 * 85.58525 * 1 2 3 22 22 H 1.09002 * 109.46961 * 205.58233 * 1 2 3 23 23 H 1.08999 * 109.47221 * 325.57934 * 1 2 3 24 24 H 1.08993 * 109.46955 * 154.33333 * 3 2 1 25 25 H 1.09000 * 109.47050 * 274.33162 * 3 2 1 26 26 H 1.00904 * 111.00423 * 303.95194 * 4 3 2 27 27 H 1.09002 * 109.47091 * 300.00139 * 5 4 3 28 28 H 1.09001 * 109.46854 * 60.00166 * 5 4 3 29 29 H 1.09000 * 109.46885 * 294.99930 * 10 6 5 30 30 H 1.09003 * 109.47053 * 54.99762 * 10 6 5 31 31 H 0.97002 * 120.00290 * 179.97438 * 14 13 11 32 32 H 1.08998 * 117.49904 * 214.96667 * 19 2 1 33 33 H 1.09000 * 117.49617 * 359.97438 * 19 2 1 34 34 H 1.09006 * 117.49961 * 359.97337 * 20 2 1 35 35 H 1.08999 * 117.50124 * 144.99451 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 1.3691 2.3154 0.7811 5 6 1.9729 3.6545 0.8027 6 6 1.0920 4.5980 1.6242 7 1 0.0769 4.5852 1.2271 8 6 1.0752 4.1557 3.0281 9 7 1.0603 3.8141 4.1114 10 6 1.6533 6.0190 1.5439 11 6 0.7200 6.9684 2.2498 12 1 -0.1836 6.5956 2.7095 13 6 1.0187 8.3132 2.3081 14 7 0.2040 9.1418 2.9238 15 14 2.5810 8.9580 1.5125 16 1 2.2998 9.3355 0.1040 17 1 3.0606 10.1495 2.2579 18 1 3.6245 7.9019 1.5431 19 6 2.2369 -1.1209 0.7646 20 6 2.2364 -1.1207 -0.7654 21 1 -0.3634 0.0791 -1.0246 22 1 -0.3633 -0.9269 0.4438 23 1 -0.3633 0.8477 0.5809 24 1 3.1822 1.3087 0.4451 25 1 2.2765 1.7417 -1.0247 26 1 0.4248 2.3506 0.4270 27 1 2.9639 3.5989 1.2532 28 1 2.0576 4.0313 -0.2165 29 1 2.6327 6.0503 2.0212 30 1 1.7489 6.3134 0.4987 31 1 0.4144 10.0878 2.9651 32 1 3.1721 -0.8750 1.2676 33 1 1.6119 -1.8584 1.2682 34 1 1.6112 -1.8583 -1.2687 35 1 3.1713 -0.8745 -1.2690 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379931706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:37 Heat of formation + Delta-G solvation = 38.044771 kcal Electronic energy + Delta-G solvation = -14585.559290 eV Core-core repulsion = 12197.981448 eV Total energy + Delta-G solvation = -2387.577843 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.74474 -37.02340 -34.80034 -33.38352 -31.64866 -28.75148 -27.54439 -25.08099 -22.63393 -22.42012 -21.43863 -19.09472 -17.18683 -16.85274 -15.72939 -15.20129 -14.96542 -14.25281 -13.97552 -13.59518 -13.40638 -12.91002 -12.60314 -12.42482 -12.30444 -12.02894 -11.90273 -11.58330 -11.33575 -11.20164 -11.15455 -10.76023 -10.41640 -10.36497 -9.93041 -9.83311 -9.69552 -9.32202 -8.61834 -8.32762 -6.10567 -4.11219 3.25560 3.34727 3.35739 3.58303 3.72515 3.80736 4.19543 4.38317 4.60724 4.71336 4.80215 4.89183 4.99435 5.24315 5.33029 5.46354 5.49395 5.54024 5.65755 5.73906 5.77864 5.81656 5.89810 5.97400 6.00227 6.19176 6.25922 6.30437 6.92075 7.04202 7.12982 7.43069 7.63944 8.40828 8.56907 8.93140 9.49307 11.02576 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.044956 B = 0.005347 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.686250 B = 5235.041733 C = 5494.886921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.097 3.903 4 N -0.691 5.691 5 C 0.063 3.937 6 C 0.020 3.980 7 H 0.104 0.896 8 C 0.252 3.748 9 N -0.471 5.471 10 C -0.005 4.005 11 C -0.528 4.528 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.877 3.123 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.169 4.169 20 C -0.180 4.180 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.343 0.657 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.025 0.975 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.960 -16.393 -10.756 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.121 4.121 3 C -0.032 4.032 4 N -0.324 5.324 5 C -0.067 4.067 6 C -0.002 4.002 7 H 0.122 0.878 8 C -0.065 4.065 9 N -0.147 5.147 10 C -0.044 4.044 11 C -0.566 4.566 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.704 3.296 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.206 4.206 20 C -0.217 4.217 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.052 0.948 26 H 0.164 0.836 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.176 -16.896 -8.463 19.353 hybrid contribution 0.604 0.957 -1.635 1.988 sum 4.780 -15.939 -10.098 19.465 Atomic orbital electron populations 1.21358 0.92016 1.02767 1.01575 1.21448 0.95105 0.90718 1.04831 1.21409 0.96600 0.89819 0.95386 1.60572 1.05886 1.08517 1.57400 1.22101 0.98644 0.87221 0.98755 1.18944 1.01686 0.96396 0.83182 0.87820 1.28686 0.92305 0.90898 0.94602 1.80995 1.09488 1.11595 1.12642 1.19636 0.97459 0.89247 0.98068 1.21035 1.08135 0.91660 1.35758 0.90768 1.24988 0.96478 0.96882 0.94746 1.69904 1.37017 1.03790 1.42809 0.86818 0.84255 0.78843 0.79645 1.20065 1.21299 1.18868 1.23105 1.02484 1.01202 0.93838 1.23042 1.02431 1.01521 0.94747 0.92559 0.92578 0.90675 0.90952 0.94801 0.83637 0.90535 0.93309 0.95642 0.94961 0.92563 0.88896 0.89038 0.88949 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.52 37.15 0.35 -0.77 16 2 C -0.12 -1.20 2.57 -154.51 -0.40 -1.60 16 3 C 0.10 1.05 5.87 -3.82 -0.02 1.03 16 4 N -0.69 -8.71 5.82 -113.77 -0.66 -9.37 16 5 C 0.06 0.87 5.05 -3.82 -0.02 0.85 16 6 C 0.02 0.35 2.35 -93.41 -0.22 0.13 16 7 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 8 C 0.25 5.27 13.67 -20.76 -0.28 4.99 16 9 N -0.47 -10.85 18.54 42.15 0.78 -10.07 16 10 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 11 C -0.53 -14.25 9.15 -34.44 -0.32 -14.57 16 12 H 0.07 2.20 7.84 -52.48 -0.41 1.79 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 15 Si 0.88 20.65 27.47 -169.99 -4.67 15.98 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 19 C -0.17 -1.64 9.82 -26.73 -0.26 -1.90 16 20 C -0.18 -1.54 9.97 -26.73 -0.27 -1.81 16 21 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 23 H 0.07 0.76 5.84 -51.93 -0.30 0.46 16 24 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 25 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.34 3.93 6.54 -39.29 -0.26 3.68 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.03 0.56 7.20 -51.93 -0.37 0.18 16 30 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16 33 H 0.09 0.84 8.05 -51.93 -0.42 0.43 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 295.66 15.07 4.46 4.46 Total: -1.00 -31.06 295.66 -6.47 -37.52 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.52 Total: -0.22 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -1.63 Total: -11.94 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.89 Total: -45.79 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.06 -6.47 -37.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379931706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.569 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds