Wall clock time and date at job start Mon Mar 30 2020 03:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47063 * 2 1 4 4 C 1.50703 * 109.46930 * 240.00557 * 2 1 3 5 5 H 1.08005 * 119.99723 * 275.07940 * 4 2 1 6 6 C 1.37874 * 120.00350 * 95.07897 * 4 2 1 7 7 N 1.31521 * 120.00148 * 184.91258 * 6 4 2 8 8 Si 1.86800 * 119.99997 * 4.91104 * 6 4 2 9 9 H 1.48500 * 109.47051 * 84.82711 * 8 6 4 10 10 H 1.48491 * 109.47339 * 204.82670 * 8 6 4 11 11 H 1.48497 * 109.47267 * 324.82975 * 8 6 4 12 12 C 1.50692 * 109.47620 * 120.00318 * 2 1 3 13 13 O 1.20763 * 120.00065 * 94.99440 * 12 2 1 14 14 C 1.50701 * 119.99900 * 274.99925 * 12 2 1 15 15 H 1.09002 * 109.61550 * 35.35663 * 14 12 2 16 16 C 1.53299 * 109.61898 * 274.99553 * 14 12 2 17 17 C 1.52876 * 108.58176 * 165.82462 * 16 14 12 18 18 C 1.52717 * 110.15176 * 54.52426 * 17 16 14 19 19 H 1.08996 * 115.38597 * 128.78695 * 18 17 16 20 20 C 1.53648 * 116.02897 * 269.79537 * 18 17 16 21 21 C 1.52069 * 120.52175 * 338.52874 * 18 17 16 22 22 H 1.08999 * 115.92513 * 149.25968 * 21 18 17 23 23 C 1.52073 * 120.01985 * 4.54111 * 21 18 17 24 24 H 1.08998 * 109.47184 * 55.03990 * 1 2 3 25 25 H 1.08995 * 109.46637 * 175.03951 * 1 2 3 26 26 H 1.09006 * 109.46590 * 295.03836 * 1 2 3 27 27 H 0.96991 * 119.99750 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.61629 * 46.10177 * 16 14 12 29 29 H 1.08998 * 109.62217 * 285.55650 * 16 14 12 30 30 H 1.09002 * 109.35734 * 294.31827 * 17 16 14 31 31 H 1.08997 * 109.36076 * 174.73377 * 17 16 14 32 32 H 1.08999 * 117.54443 * 4.31411 * 20 18 17 33 33 H 1.08997 * 117.53762 * 219.06082 * 20 18 17 34 34 H 1.09003 * 109.26536 * 99.78437 * 23 21 18 35 35 H 1.09006 * 109.26542 * 219.25144 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1342 -1.7855 -1.2296 6 6 2.3618 0.0124 -2.3576 7 7 2.7075 -0.6127 -3.4619 8 14 2.3171 1.8794 -2.3161 9 1 3.6028 2.3935 -1.7796 10 1 2.1109 2.4003 -3.6913 11 1 1.2020 2.3286 -1.4443 12 6 2.0325 -0.7104 1.2303 13 8 2.3196 -1.8821 1.1760 14 6 2.1765 0.0413 2.5285 15 1 1.3772 0.7774 2.6157 16 6 3.5352 0.7502 2.5648 17 6 3.5200 1.7747 3.6993 18 6 3.1372 1.0983 5.0139 19 1 3.8106 1.2868 5.8499 20 6 1.6367 1.0651 5.3431 21 6 2.3818 -0.2215 5.0120 22 1 2.5815 -0.8861 5.8525 23 6 2.0919 -0.9303 3.6982 24 1 -0.3633 0.5888 -0.8422 25 1 -0.3632 -1.0238 -0.0889 26 1 -0.3633 0.4350 0.9312 27 1 2.9396 -0.1043 -4.2546 28 1 3.7087 1.2577 1.6158 29 1 4.3246 0.0198 2.7418 30 1 2.7954 2.5563 3.4708 31 1 4.5100 2.2202 3.7972 32 1 0.9476 1.4553 4.5942 33 1 1.3448 1.2255 6.3809 34 1 2.8197 -1.7284 3.5519 35 1 1.0905 -1.3595 3.7344 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700047944.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:33 Heat of formation + Delta-G solvation = -39.184688 kcal Electronic energy + Delta-G solvation = -15605.140161 eV Core-core repulsion = 13181.920646 eV Total energy + Delta-G solvation = -2423.219514 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.96309 -37.97132 -33.67563 -32.93389 -31.21691 -30.67998 -25.48073 -25.26796 -23.28391 -21.95938 -21.00106 -18.49551 -18.15813 -17.05925 -16.03413 -15.13842 -14.35967 -14.32199 -14.18023 -13.61480 -13.33405 -13.02770 -12.55028 -12.39996 -12.19321 -11.87442 -11.48838 -11.41620 -11.12636 -10.86216 -10.77398 -10.73347 -10.43239 -10.23691 -9.80810 -9.69786 -9.57619 -9.14091 -8.63572 -8.24879 -6.08804 -4.08755 2.98160 3.24152 3.31199 3.33242 3.75786 4.37282 4.62642 4.70842 4.82097 4.98825 5.12384 5.22588 5.27513 5.41793 5.59059 5.60733 5.74323 5.82122 5.86217 6.00492 6.12236 6.16691 6.21531 6.28601 6.31865 6.35914 6.45330 6.54009 6.59419 6.60184 6.96295 7.21528 7.62162 8.43630 8.65695 9.05460 9.51359 11.04431 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.037027 B = 0.008436 C = 0.007796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.017136 B = 3318.389232 C = 3590.951036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.033 4.033 3 H 0.051 0.949 4 C -0.507 4.507 5 H 0.085 0.915 6 C 0.072 3.928 7 N -0.896 5.896 8 Si 0.870 3.130 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.263 1.263 12 C 0.372 3.628 13 O -0.454 6.454 14 C -0.143 4.143 15 H 0.088 0.912 16 C -0.106 4.106 17 C -0.087 4.087 18 C -0.148 4.148 19 H 0.098 0.902 20 C -0.189 4.189 21 C -0.133 4.133 22 H 0.097 0.903 23 C -0.079 4.079 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.027 0.973 27 H 0.264 0.736 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.063 6.349 15.591 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.053 4.053 3 H 0.069 0.931 4 C -0.544 4.544 5 H 0.103 0.897 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.697 3.303 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.188 1.188 12 C 0.246 3.754 13 O -0.326 6.326 14 C -0.162 4.162 15 H 0.106 0.894 16 C -0.144 4.144 17 C -0.125 4.125 18 C -0.166 4.166 19 H 0.116 0.884 20 C -0.226 4.226 21 C -0.151 4.151 22 H 0.115 0.885 23 C -0.116 4.116 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.852 5.738 15.357 16.416 hybrid contribution -0.017 1.176 -0.049 1.177 sum -0.869 6.913 15.308 16.819 Atomic orbital electron populations 1.21848 0.96578 1.01275 0.99076 1.19642 0.94229 0.97310 0.94100 0.93100 1.20877 1.43322 0.96159 0.94072 0.89704 1.25050 0.94591 0.98083 0.95273 1.69897 1.46022 1.35740 1.01658 0.86967 0.79132 0.86705 0.77516 1.19990 1.21293 1.18775 1.24954 0.72204 0.88471 0.89799 1.90244 1.37494 1.18542 1.86308 1.21806 0.99472 0.99305 0.95655 0.89369 1.21432 0.95878 0.98219 0.98822 1.21050 1.01544 0.97361 0.92505 1.22237 0.94401 1.00772 0.99207 0.88360 1.23159 0.94968 1.02649 1.01784 1.21823 1.03631 0.90450 0.99244 0.88491 1.20640 1.02386 0.97690 0.90869 0.92760 0.92993 0.95445 0.92554 0.90867 0.91182 0.91522 0.91469 0.88657 0.89350 0.90447 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.16 37.16 0.34 -2.35 16 2 C -0.03 -0.77 2.23 -92.92 -0.21 -0.98 16 3 H 0.05 1.14 5.29 -51.93 -0.27 0.86 16 4 C -0.51 -14.48 8.55 -34.44 -0.29 -14.77 16 5 H 0.08 2.75 7.51 -52.48 -0.39 2.36 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 8 Si 0.87 20.83 26.99 -169.99 -4.59 16.24 16 9 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.26 -5.87 6.82 56.52 0.39 -5.48 16 12 C 0.37 7.94 5.35 -29.04 -0.16 7.79 16 13 O -0.45 -11.15 15.54 6.00 0.09 -11.06 16 14 C -0.14 -2.34 2.17 -91.98 -0.20 -2.54 16 15 H 0.09 1.32 7.12 -51.93 -0.37 0.95 16 16 C -0.11 -1.60 5.26 -26.64 -0.14 -1.74 16 17 C -0.09 -1.05 5.83 -26.94 -0.16 -1.21 16 18 C -0.15 -1.68 6.19 -90.90 -0.56 -2.24 16 19 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 20 C -0.19 -2.05 9.65 -26.75 -0.26 -2.31 16 21 C -0.13 -1.62 6.03 -91.92 -0.55 -2.17 16 22 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 23 C -0.08 -1.16 4.87 -27.56 -0.13 -1.30 16 24 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 28 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 29 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 30 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.07 7.27 -51.93 -0.38 0.69 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.25 7.62 -51.93 -0.40 0.85 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 280.71 15.07 4.23 4.23 Total: -1.00 -31.04 280.71 -7.51 -38.55 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.60 Total: 0.63 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -2.42 Total: -21.86 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.77 Total: -26.74 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.59 Total: 16.24 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.04 -7.51 -38.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700047944.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.635 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds