Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29705 * 120.00392 * 2 1 4 4 N 1.40105 * 119.99589 * 359.97438 * 3 2 1 5 5 C 1.46500 * 119.99660 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47129 * 329.99667 * 5 4 3 7 7 C 1.52997 * 109.47473 * 89.99925 * 5 4 3 8 8 C 1.50708 * 109.47008 * 210.00093 * 5 4 3 9 9 H 1.08000 * 119.99723 * 359.97438 * 8 5 4 10 10 C 1.37873 * 119.99930 * 179.97438 * 8 5 4 11 11 N 1.31509 * 120.00195 * 0.02562 * 10 8 5 12 12 Si 1.86803 * 119.99968 * 179.97438 * 10 8 5 13 13 H 1.48500 * 109.46809 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46948 * 120.00245 * 12 10 8 15 15 H 1.48497 * 109.47378 * 240.00531 * 12 10 8 16 16 C 1.47567 * 119.99581 * 180.02562 * 2 1 3 17 17 C 1.41115 * 126.07784 * 179.71789 * 16 2 1 18 18 C 1.34998 * 107.83659 * 179.88225 * 17 16 2 19 19 N 1.35075 * 108.05064 * 0.37077 * 18 17 16 20 20 H 0.97003 * 125.90128 * 179.73656 * 19 18 17 21 21 N 1.31871 * 126.07834 * 0.02562 * 16 2 1 22 22 H 1.08999 * 109.46899 * 89.99705 * 1 2 3 23 23 H 1.09002 * 109.47153 * 209.99998 * 1 2 3 24 24 H 1.09003 * 109.47044 * 330.00255 * 1 2 3 25 25 H 0.96998 * 120.00180 * 359.97438 * 4 3 2 26 26 H 1.09002 * 109.47153 * 59.99757 * 7 5 4 27 27 H 1.09001 * 109.46832 * 299.99948 * 7 5 4 28 28 H 1.09004 * 109.47261 * 179.97438 * 7 5 4 29 29 H 0.97006 * 120.00358 * 179.97438 * 11 10 8 30 30 H 1.08005 * 126.07987 * 359.97438 * 17 16 2 31 31 H 1.08009 * 125.97784 * 180.13447 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1557 1.1232 0.0000 4 7 1.4551 2.3366 -0.0005 5 6 2.1877 3.6053 -0.0011 6 1 3.1401 3.4751 0.5128 7 6 2.4428 4.0463 -1.4437 8 6 1.3733 4.6559 0.7089 9 1 0.4065 4.4038 1.1191 10 6 1.8624 5.9388 0.8348 11 7 3.0393 6.2458 0.3348 12 14 0.8526 7.2413 1.7142 13 1 -0.4252 6.6455 2.1807 14 1 1.6145 7.7539 2.8812 15 1 0.5659 8.3596 0.7802 16 6 2.2448 -1.2780 -0.0006 17 6 3.6480 -1.4275 -0.0063 18 6 3.9230 -2.7492 -0.0021 19 7 2.7510 -3.4206 -0.0025 20 1 2.6480 -4.3852 -0.0036 21 7 1.7100 -2.4834 -0.0016 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 0.4852 2.3366 -0.0013 26 1 1.4904 4.1765 -1.9577 27 1 3.0319 3.2864 -1.9572 28 1 2.9875 4.9905 -1.4441 29 1 3.3833 7.1486 0.4231 30 1 4.3729 -0.6270 -0.0113 31 1 4.9080 -3.1924 -0.0027 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814883697.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = 112.530849 kcal Electronic energy + Delta-G solvation = -14421.598174 eV Core-core repulsion = 11933.709946 eV Total energy + Delta-G solvation = -2487.888227 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.78333 -36.93299 -34.38420 -32.11008 -30.58660 -29.85116 -28.40814 -26.73682 -25.18624 -22.59406 -20.94240 -20.17475 -18.49373 -18.04548 -16.49579 -15.18625 -15.02784 -14.55659 -14.29688 -13.49675 -13.29875 -13.20510 -12.81240 -12.41603 -12.02692 -11.54024 -11.30075 -11.04292 -10.79076 -10.61697 -10.47509 -10.22201 -10.19777 -9.42264 -9.33158 -8.95133 -8.58655 -8.48465 -6.78915 -6.12318 -4.20361 1.79666 2.49229 2.93860 3.24877 3.32655 3.36134 3.72989 3.87868 4.38209 4.85509 5.09735 5.20480 5.39822 5.70119 5.93581 5.96548 6.06828 6.15496 6.46536 6.74927 6.87480 7.00038 7.03420 7.17601 7.40111 7.59381 7.76427 7.87229 7.89258 8.17550 8.32296 8.87430 9.34835 9.46517 10.93603 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.053717 B = 0.005418 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.127678 B = 5166.658002 C = 5394.898003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.042 3.958 3 N -0.178 5.178 4 N -0.616 5.616 5 C 0.295 3.705 6 H 0.043 0.957 7 C -0.150 4.150 8 C -0.529 4.529 9 H 0.060 0.940 10 C 0.067 3.933 11 N -0.886 5.886 12 Si 0.902 3.098 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.162 3.838 17 C -0.243 4.243 18 C 0.046 3.954 19 N -0.484 5.484 20 H 0.436 0.564 21 N -0.293 5.293 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.372 0.628 26 H 0.026 0.974 27 H 0.013 0.987 28 H 0.090 0.910 29 H 0.264 0.736 30 H 0.153 0.847 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 -14.254 -1.119 14.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 N 0.006 4.994 4 N -0.355 5.355 5 C 0.193 3.807 6 H 0.061 0.939 7 C -0.209 4.209 8 C -0.569 4.569 9 H 0.079 0.921 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.730 3.270 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.005 4.005 17 C -0.273 4.273 18 C -0.100 4.100 19 N -0.194 5.194 20 H 0.279 0.721 21 N -0.121 5.121 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.209 0.791 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.170 0.830 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.148 -14.151 -1.134 14.197 hybrid contribution -0.857 0.470 0.421 1.064 sum -0.709 -13.681 -0.713 13.718 Atomic orbital electron populations 1.20865 0.92696 1.02713 1.02113 1.21046 0.92210 0.88673 1.12823 1.73972 1.28321 0.93067 1.04080 1.49095 1.06378 1.00045 1.79970 1.18579 0.92839 0.76201 0.93059 0.93914 1.22203 0.99262 1.01808 0.97674 1.21271 1.04540 0.94374 1.36665 0.92137 1.24849 0.95121 0.98222 0.95415 1.69899 1.17424 1.20238 1.44792 0.86376 0.80108 0.81227 0.79300 1.19762 1.20852 1.20859 1.19965 0.92016 0.90425 0.98055 1.21671 0.95614 0.95915 1.14141 1.22453 0.91655 0.93220 1.02704 1.46231 1.03748 1.08763 1.60633 0.72129 1.77562 1.10359 0.97444 1.26705 0.91685 0.91015 0.91884 0.79051 0.95516 0.96753 0.89156 0.92633 0.82968 0.80893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 9.43 36.01 0.34 -1.66 16 2 C 0.04 0.79 7.13 -79.68 -0.57 0.22 16 3 N -0.18 -3.77 11.24 35.13 0.39 -3.37 16 4 N -0.62 -13.86 5.95 -5.88 -0.03 -13.90 16 5 C 0.30 7.55 3.23 -69.08 -0.22 7.33 16 6 H 0.04 1.21 8.14 -51.93 -0.42 0.79 16 7 C -0.15 -3.70 9.29 37.16 0.35 -3.36 16 8 C -0.53 -14.22 8.74 -34.44 -0.30 -14.52 16 9 H 0.06 1.60 7.79 -52.49 -0.41 1.19 16 10 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 11 N -0.89 -24.61 11.32 55.43 0.63 -23.99 16 12 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 13 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 C 0.16 2.77 7.03 -82.95 -0.58 2.18 16 17 C -0.24 -3.66 10.53 -39.64 -0.42 -4.08 16 18 C 0.05 0.51 11.96 -17.28 -0.21 0.30 16 19 N -0.48 -5.52 7.34 30.41 0.22 -5.29 16 20 H 0.44 3.19 8.96 -182.62 -1.64 1.55 16 21 N -0.29 -4.56 12.41 33.32 0.41 -4.15 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16 24 H 0.06 1.01 6.35 -51.93 -0.33 0.68 16 25 H 0.37 7.79 6.36 -182.60 -1.16 6.63 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.15 2.30 8.06 -52.48 -0.42 1.88 16 31 H 0.17 1.15 8.06 -52.48 -0.42 0.72 16 LS Contribution 272.21 15.07 4.10 4.10 Total: -1.00 -30.30 272.21 -6.94 -37.24 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.93 Total: 5.49 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.71 Total: -11.88 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 1.62 Total: -50.70 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.30 -6.94 -37.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814883697.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.769 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds