Wall clock time and date at job start Mon Mar 30 2020 02:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28595 * 124.62033 * 2 1 4 4 C 1.31382 * 108.71778 * 180.02562 * 3 2 1 5 5 C 1.39676 * 105.90026 * 359.97438 * 4 3 2 6 6 C 1.50702 * 127.04645 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47215 * 95.00285 * 6 5 4 8 8 C 1.47961 * 111.00005 * 169.99576 * 7 6 5 9 9 C 1.53934 * 86.17939 * 137.58072 * 8 7 6 10 10 C 1.50703 * 113.73399 * 221.81705 * 9 8 7 11 11 H 1.07999 * 119.99920 * 358.09577 * 10 9 8 12 12 C 1.37877 * 119.99669 * 178.10223 * 10 9 8 13 13 N 1.31521 * 119.99589 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00327 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.47056 * 90.00030 * 14 12 10 16 16 H 1.48501 * 109.47403 * 209.99911 * 14 12 10 17 17 H 1.48493 * 109.47309 * 330.00170 * 14 12 10 18 18 C 1.48296 * 111.00409 * 269.34877 * 7 6 5 19 19 N 1.28605 * 124.61788 * 180.32697 * 2 1 3 20 20 H 1.09001 * 109.46984 * 89.97873 * 1 2 3 21 21 H 1.09001 * 109.47352 * 209.97616 * 1 2 3 22 22 H 1.08998 * 109.47071 * 329.98011 * 1 2 3 23 23 H 1.08001 * 127.04774 * 179.97438 * 4 3 2 24 24 H 1.09001 * 109.47251 * 334.99860 * 6 5 4 25 25 H 1.09004 * 109.46551 * 215.00227 * 6 5 4 26 26 H 1.09007 * 113.75652 * 23.26342 * 8 7 6 27 27 H 1.08993 * 113.76177 * 251.90248 * 8 7 6 28 28 H 1.09002 * 113.73279 * 90.64057 * 9 8 7 29 29 H 0.96995 * 119.99785 * 179.97438 * 13 12 10 30 30 H 1.09001 * 113.86054 * 108.14174 * 18 7 6 31 31 H 1.09000 * 113.76062 * 336.68481 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6983 -0.0006 5 6 3.4591 -0.6985 -0.0003 6 6 4.6618 -1.6065 -0.0013 7 7 4.9812 -1.9977 1.3782 8 6 5.9995 -3.0709 1.4028 9 6 6.6444 -2.2910 2.5628 10 6 8.1480 -2.2247 2.4871 11 1 8.6711 -2.7265 1.6865 12 6 8.8559 -1.5237 3.4402 13 7 10.1682 -1.4662 3.3745 14 14 7.9512 -0.6554 4.8247 15 1 7.8014 -1.5819 5.9756 16 1 8.7245 0.5395 5.2486 17 1 6.6086 -0.2336 4.3508 18 6 5.9399 -1.0471 1.9919 19 7 2.1956 -1.0584 -0.0060 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3634 -0.8902 0.5135 22 1 -0.3633 0.8898 0.5141 23 1 4.3211 1.3490 -0.0011 24 1 5.5126 -1.0821 -0.4365 25 1 4.4440 -2.4973 -0.5904 26 1 6.6160 -3.1119 0.5048 27 1 5.6047 -4.0442 1.6938 28 1 6.2812 -2.5881 3.5466 29 1 10.6662 -0.9727 4.0447 30 1 5.4975 -0.4047 2.7533 31 1 6.5390 -0.4975 1.2659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826985320.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:12 Heat of formation + Delta-G solvation = 149.177880 kcal Electronic energy + Delta-G solvation = -14778.046159 eV Core-core repulsion = 12291.747066 eV Total energy + Delta-G solvation = -2486.299093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.35988 -38.86780 -34.11203 -32.69214 -32.29405 -30.27183 -27.61070 -25.60762 -25.18659 -22.70674 -21.97188 -20.36526 -18.60544 -17.24813 -16.93443 -16.67846 -15.12493 -14.90480 -14.50325 -14.27758 -13.63060 -13.18434 -13.05733 -12.74554 -12.64602 -12.06030 -11.74074 -11.04567 -10.97839 -10.64257 -10.28637 -10.18890 -9.97128 -9.93666 -9.62791 -9.14640 -8.89587 -8.55846 -8.04666 -6.09698 -4.09942 1.94418 2.42023 2.60531 3.30741 3.39432 3.44210 4.17923 4.43240 4.73555 4.86175 4.93868 5.10942 5.13919 5.20405 5.40056 5.63362 5.79485 5.90913 6.13731 6.24361 6.34539 6.36841 6.46231 6.51663 6.76675 6.81370 7.03543 7.37753 7.70645 7.83218 8.48404 8.49206 8.93406 9.53533 11.02856 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.046494 B = 0.006503 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.079079 B = 4304.557394 C = 4559.264812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.168 5.168 3 N -0.298 5.298 4 C -0.020 4.020 5 C 0.029 3.971 6 C 0.105 3.895 7 N -0.485 5.485 8 C 0.015 3.985 9 C -0.002 4.002 10 C -0.513 4.513 11 H 0.074 0.926 12 C 0.074 3.926 13 N -0.900 5.900 14 Si 0.872 3.128 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.254 1.254 18 C -0.006 4.006 19 N -0.281 5.281 20 H 0.084 0.916 21 H 0.100 0.900 22 H 0.098 0.902 23 H 0.195 0.805 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.943 3.147 -6.601 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.069 5.069 3 N -0.139 5.139 4 C -0.203 4.203 5 C -0.134 4.134 6 C -0.025 4.025 7 N -0.209 5.209 8 C -0.113 4.113 9 C -0.021 4.021 10 C -0.551 4.551 11 H 0.092 0.908 12 C -0.128 4.128 13 N -0.537 5.537 14 Si 0.699 3.301 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.179 1.179 18 C -0.135 4.135 19 N -0.123 5.123 20 H 0.103 0.897 21 H 0.118 0.882 22 H 0.117 0.883 23 H 0.212 0.788 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.861 3.128 -6.246 19.179 hybrid contribution 1.243 0.801 0.311 1.511 sum -16.619 3.929 -5.935 18.079 Atomic orbital electron populations 1.22006 0.70820 1.05550 1.04422 1.47860 1.08621 0.99601 1.50809 1.73974 1.04038 1.16208 1.19714 1.24652 0.94259 0.95073 1.06288 1.23108 0.92435 0.93801 1.04101 1.20862 0.91019 0.96598 0.94035 1.68553 1.32138 1.07058 1.13109 1.23879 0.91906 0.95407 1.00124 1.20734 0.96000 0.91124 0.94290 1.20976 0.88561 1.33119 1.12422 0.90753 1.24993 0.94574 0.95762 0.97482 1.69913 1.06030 1.42112 1.35662 0.86943 0.80906 0.79479 0.82725 1.20386 1.21543 1.17866 1.24612 0.92644 0.97375 0.98867 1.74012 1.03821 1.15142 1.19363 0.89706 0.88161 0.88290 0.78841 0.91563 0.90018 0.91695 0.91030 0.93022 0.92631 0.91509 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.93 11.57 59.85 0.69 1.62 16 2 N -0.17 -2.41 4.35 -16.64 -0.07 -2.48 16 3 N -0.30 -4.58 12.05 30.68 0.37 -4.21 16 4 C -0.02 -0.31 12.16 -17.21 -0.21 -0.52 16 5 C 0.03 0.48 6.91 -82.25 -0.57 -0.09 16 6 C 0.11 1.73 5.39 -4.97 -0.03 1.71 16 7 N -0.49 -9.36 6.15 -239.48 -1.47 -10.84 16 8 C 0.02 0.30 7.50 -2.76 -0.02 0.28 16 9 C 0.00 -0.05 2.88 -90.84 -0.26 -0.31 16 10 C -0.51 -13.94 9.33 -34.44 -0.32 -14.26 16 11 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 12 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 13 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 14 Si 0.87 21.11 27.08 -169.99 -4.60 16.51 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.25 -5.85 5.27 56.52 0.30 -5.56 16 18 C -0.01 -0.13 6.61 -2.57 -0.02 -0.15 16 19 N -0.28 -4.63 12.05 33.71 0.41 -4.23 16 20 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 21 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.19 2.47 8.06 -52.49 -0.42 2.05 16 24 H 0.07 1.02 7.38 -51.93 -0.38 0.64 16 25 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 26 H 0.06 1.25 7.88 -51.92 -0.41 0.84 16 27 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.05 1.23 7.20 -51.93 -0.37 0.85 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.07 1.43 6.82 -51.93 -0.35 1.08 16 31 H 0.07 1.42 7.43 -51.93 -0.39 1.03 16 LS Contribution 264.73 15.07 3.99 3.99 Total: -1.00 -32.43 264.73 -5.54 -37.97 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.10 Total: -0.80 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -0.83 Total: -9.72 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.00 Total: -47.95 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.60 Total: 16.51 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.43 -5.54 -37.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826985320.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.152 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds