Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86802 * 120.00188 * 2 1 4 4 H 1.48500 * 109.47189 * 240.00040 * 3 2 1 5 5 H 1.48494 * 109.46935 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46652 * 120.00223 * 3 2 1 7 7 C 1.40149 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99764 * 179.97438 * 7 2 1 9 9 C 1.41489 * 120.00179 * 359.97438 * 7 2 1 10 10 O 1.21829 * 119.99812 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00124 * 180.02562 * 9 7 2 12 12 C 1.39242 * 119.99985 * 185.51714 * 11 9 7 13 13 C 1.38982 * 120.13906 * 24.86198 * 12 11 9 14 14 C 1.38034 * 119.99210 * 179.97438 * 13 12 11 15 15 C 1.38583 * 120.28822 * 0.02562 * 14 13 12 16 16 C 1.38051 * 120.28986 * 359.97438 * 15 14 13 17 17 C 1.38941 * 119.99967 * 359.97438 * 16 15 14 18 18 S 1.76196 * 120.14611 * 180.02562 * 17 16 15 19 19 H 0.97000 * 119.99903 * 359.97438 * 1 2 3 20 20 H 0.96997 * 120.00240 * 5.52380 * 11 9 7 21 21 H 1.07998 * 120.00413 * 0.27868 * 13 12 11 22 22 H 1.08005 * 119.84872 * 180.02562 * 14 13 12 23 23 H 1.08006 * 119.85261 * 179.97438 * 15 14 13 24 24 H 1.08008 * 119.99790 * 179.97438 * 16 15 14 25 25 H 1.34499 * 103.00273 * 89.99778 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2753 2.7464 0.0006 6 1 3.0941 1.6962 1.2126 7 6 2.0070 -1.2137 -0.0005 8 1 3.0870 -1.2137 -0.0010 9 6 1.2995 -2.4391 -0.0005 10 8 0.0812 -2.4390 0.0004 11 7 1.9734 -3.6063 -0.0005 12 6 1.2820 -4.8093 -0.1165 13 6 0.0353 -4.8414 -0.7300 14 6 -0.6472 -6.0358 -0.8438 15 6 -0.0952 -7.2062 -0.3479 16 6 1.1423 -7.1879 0.2637 17 6 1.8403 -5.9925 0.3837 18 16 3.4203 -5.9648 1.1630 19 1 -0.4850 0.8401 0.0004 20 1 2.9400 -3.6083 0.0803 21 1 -0.3972 -3.9328 -1.1221 22 1 -1.6157 -6.0581 -1.3213 23 1 -0.6355 -8.1368 -0.4403 24 1 1.5680 -8.1028 0.6488 25 1 4.2663 -6.1794 0.1396 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034797473.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = -9.430754 kcal Electronic energy + Delta-G solvation = -12651.919685 eV Core-core repulsion = 10335.651169 eV Total energy + Delta-G solvation = -2316.268516 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.21791 -37.02035 -33.63018 -32.51559 -30.39118 -29.08032 -26.46177 -22.54656 -22.15946 -19.89478 -17.80992 -17.42515 -16.41367 -15.70577 -15.23550 -14.54333 -13.99172 -13.67890 -13.37734 -12.71143 -12.61864 -12.11551 -11.50639 -11.32607 -11.11367 -11.10365 -10.66405 -10.41800 -10.28756 -9.49001 -8.94516 -8.43701 -7.84769 -7.74553 -7.09905 -6.43553 -4.97849 1.45233 2.02018 2.13348 3.04635 3.10009 3.11956 3.16477 3.93506 4.15450 4.45660 4.59540 5.33325 5.52826 5.63781 5.73911 6.06463 6.13837 6.46014 6.75043 6.91120 7.07239 7.17128 7.36566 7.79029 7.96192 8.08399 8.73210 9.18206 10.29915 10.49145 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.040022 B = 0.008210 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.448684 B = 3409.471676 C = 4043.626952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.088 3.912 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.533 4.533 8 H 0.071 0.929 9 C 0.539 3.461 10 O -0.563 6.563 11 N -0.685 5.685 12 C 0.246 3.754 13 C -0.150 4.150 14 C -0.073 4.073 15 C -0.185 4.185 16 C -0.050 4.050 17 C -0.185 4.185 18 S -0.129 6.129 19 H 0.275 0.725 20 H 0.397 0.603 21 H 0.158 0.842 22 H 0.119 0.881 23 H 0.116 0.884 24 H 0.123 0.877 25 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.435 -8.209 -1.010 8.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.090 0.910 9 C 0.350 3.650 10 O -0.447 6.447 11 N -0.325 5.325 12 C 0.139 3.861 13 C -0.172 4.172 14 C -0.092 4.092 15 C -0.206 4.206 16 C -0.072 4.072 17 C -0.301 4.301 18 S 0.028 5.972 19 H 0.086 0.914 20 H 0.233 0.767 21 H 0.175 0.825 22 H 0.138 0.862 23 H 0.134 0.866 24 H 0.141 0.859 25 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 3.180 -7.864 -0.399 8.492 hybrid contribution 0.643 0.526 -1.181 1.444 sum 3.823 -7.338 -1.580 8.423 Atomic orbital electron populations 1.69988 1.07327 1.28194 1.31619 1.25770 0.94680 1.00752 0.92359 0.86301 0.79864 0.80174 0.79796 1.19017 1.20275 1.18896 1.19989 0.94513 0.89958 1.52355 0.91030 1.17031 0.87640 0.81988 0.78383 1.90619 1.13452 1.85812 1.54854 1.44448 1.10386 1.04362 1.73258 1.18223 0.92441 0.85976 0.89468 1.21728 0.94824 0.99622 1.01046 1.21227 0.98822 0.92234 0.96944 1.20887 0.96780 0.98157 1.04803 1.21122 0.94286 0.95856 0.95893 1.20984 0.99150 0.96074 1.13935 1.85842 1.00242 1.95898 1.15215 0.91435 0.76742 0.82465 0.86250 0.86569 0.85906 0.97858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.02 11.72 55.56 0.65 -20.37 15 2 C 0.09 2.32 5.50 -17.35 -0.10 2.23 15 3 Si 0.91 19.07 29.56 -169.99 -5.02 14.04 15 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 15 7 C -0.53 -14.40 9.30 -37.63 -0.35 -14.75 15 8 H 0.07 1.76 7.85 -52.48 -0.41 1.35 15 9 C 0.54 14.86 7.36 -15.02 -0.11 14.75 15 10 O -0.56 -17.17 12.03 5.07 0.06 -17.11 15 11 N -0.68 -15.85 5.14 -12.33 -0.06 -15.91 15 12 C 0.25 5.31 6.44 -83.53 -0.54 4.77 15 13 C -0.15 -3.21 8.70 -39.38 -0.34 -3.55 15 14 C -0.07 -1.27 10.04 -39.53 -0.40 -1.66 15 15 C -0.18 -2.85 10.04 -39.52 -0.40 -3.25 15 16 C -0.05 -0.81 9.79 -39.39 -0.39 -1.20 15 17 C -0.18 -3.44 6.15 -38.64 -0.24 -3.67 15 18 S -0.13 -2.12 24.51 -107.50 -2.63 -4.75 15 19 H 0.27 7.00 8.29 -40.82 -0.34 6.67 15 20 H 0.40 8.25 7.61 -40.82 -0.31 7.94 15 21 H 0.16 3.85 5.79 -52.49 -0.30 3.54 15 22 H 0.12 1.75 8.06 -52.48 -0.42 1.33 15 23 H 0.12 1.42 8.06 -52.48 -0.42 1.00 15 24 H 0.12 1.64 8.06 -52.48 -0.42 1.21 15 25 H 0.06 0.85 9.07 97.61 0.89 1.73 15 LS Contribution 240.37 15.07 3.62 3.62 Total: -1.00 -30.49 240.37 -6.78 -37.27 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -0.54 Total: 9.54 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.85 Total: -6.34 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.59 Total: -36.28 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.06 Total: -17.11 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -2.63 Total: -4.75 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.49 -6.78 -37.27 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034797473.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.842 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds