Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86802 * 120.00188 * 2 1 4 4 H 1.48500 * 109.47189 * 240.00040 * 3 2 1 5 5 H 1.48494 * 109.46935 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46652 * 120.00223 * 3 2 1 7 7 C 1.40149 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99764 * 179.97438 * 7 2 1 9 9 C 1.41489 * 120.00179 * 359.97438 * 7 2 1 10 10 O 1.21829 * 119.99812 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00124 * 180.02562 * 9 7 2 12 12 C 1.39242 * 119.99985 * 185.51714 * 11 9 7 13 13 C 1.38982 * 120.13906 * 24.86198 * 12 11 9 14 14 C 1.38034 * 119.99210 * 179.97438 * 13 12 11 15 15 C 1.38583 * 120.28822 * 0.02562 * 14 13 12 16 16 C 1.38051 * 120.28986 * 359.97438 * 15 14 13 17 17 C 1.38941 * 119.99967 * 359.97438 * 16 15 14 18 18 S 1.76196 * 120.14611 * 180.02562 * 17 16 15 19 19 H 0.97000 * 119.99903 * 359.97438 * 1 2 3 20 20 H 0.96997 * 120.00240 * 5.52380 * 11 9 7 21 21 H 1.07998 * 120.00413 * 0.27868 * 13 12 11 22 22 H 1.08005 * 119.84872 * 180.02562 * 14 13 12 23 23 H 1.08006 * 119.85261 * 179.97438 * 15 14 13 24 24 H 1.08008 * 119.99790 * 179.97438 * 16 15 14 25 25 H 1.34499 * 103.00273 * 89.99778 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2753 2.7464 0.0006 6 1 3.0941 1.6962 1.2126 7 6 2.0070 -1.2137 -0.0005 8 1 3.0870 -1.2137 -0.0010 9 6 1.2995 -2.4391 -0.0005 10 8 0.0812 -2.4390 0.0004 11 7 1.9734 -3.6063 -0.0005 12 6 1.2820 -4.8093 -0.1165 13 6 0.0353 -4.8414 -0.7300 14 6 -0.6472 -6.0358 -0.8438 15 6 -0.0952 -7.2062 -0.3479 16 6 1.1423 -7.1879 0.2637 17 6 1.8403 -5.9925 0.3837 18 16 3.4203 -5.9648 1.1630 19 1 -0.4850 0.8401 0.0004 20 1 2.9400 -3.6083 0.0803 21 1 -0.3972 -3.9328 -1.1221 22 1 -1.6157 -6.0581 -1.3213 23 1 -0.6355 -8.1368 -0.4403 24 1 1.5680 -8.1028 0.6488 25 1 4.2663 -6.1794 0.1396 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034797473.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = -30.058836 kcal Electronic energy + Delta-G solvation = -12652.814186 eV Core-core repulsion = 10335.651169 eV Total energy + Delta-G solvation = -2317.163017 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.88691 -38.76751 -35.44579 -34.53879 -31.82560 -30.75432 -28.37649 -24.10808 -23.70172 -21.68209 -19.57615 -18.92307 -17.96488 -17.66560 -16.68042 -16.20578 -15.64406 -15.17254 -15.00643 -14.52999 -14.24919 -13.72850 -13.26062 -12.83922 -12.79624 -12.67199 -12.44654 -12.06895 -11.66049 -11.18886 -10.87170 -9.96955 -9.70522 -9.14520 -8.76882 -8.41572 -7.06988 0.05859 0.56427 0.75709 1.39157 1.41558 1.54509 1.87016 2.19580 2.33102 2.82599 2.94770 3.60785 4.01497 4.20412 4.47605 4.59819 4.70059 5.05344 5.17718 5.37694 5.39668 5.64236 5.84451 5.89687 6.10680 6.32325 6.69357 7.29624 8.31596 8.50944 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.040022 B = 0.008210 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.448684 B = 3409.471676 C = 4043.626952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.034 3.966 3 Si 1.002 2.998 4 H -0.253 1.253 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.563 4.563 8 H 0.089 0.911 9 C 0.526 3.474 10 O -0.606 6.606 11 N -0.685 5.685 12 C 0.205 3.795 13 C -0.183 4.183 14 C -0.070 4.070 15 C -0.164 4.164 16 C -0.045 4.045 17 C -0.189 4.189 18 S -0.123 6.123 19 H 0.281 0.719 20 H 0.405 0.595 21 H 0.114 0.886 22 H 0.144 0.856 23 H 0.164 0.836 24 H 0.161 0.839 25 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.627 -9.732 -0.772 10.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.185 4.185 3 Si 0.820 3.180 4 H -0.177 1.177 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.598 4.598 8 H 0.107 0.893 9 C 0.336 3.664 10 O -0.494 6.494 11 N -0.326 5.326 12 C 0.101 3.899 13 C -0.205 4.205 14 C -0.089 4.089 15 C -0.185 4.185 16 C -0.066 4.066 17 C -0.305 4.305 18 S 0.034 5.966 19 H 0.091 0.909 20 H 0.242 0.758 21 H 0.132 0.868 22 H 0.162 0.838 23 H 0.181 0.819 24 H 0.179 0.821 25 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 4.391 -9.454 -0.166 10.425 hybrid contribution 0.252 0.777 -1.268 1.508 sum 4.642 -8.677 -1.434 9.944 Atomic orbital electron populations 1.70135 1.09650 1.29770 1.32844 1.27014 0.95523 1.05061 0.90886 0.85001 0.78291 0.74212 0.80453 1.17739 1.19467 1.17703 1.20521 0.95590 0.90667 1.52991 0.89268 1.17367 0.87398 0.83576 0.78020 1.90585 1.15156 1.86937 1.56697 1.43983 1.10543 1.04184 1.73929 1.18460 0.93156 0.86413 0.91831 1.21506 0.95994 0.99837 1.03193 1.21523 0.99461 0.91470 0.96454 1.21402 0.96301 0.98875 1.01927 1.21647 0.94169 0.96102 0.94632 1.21239 1.00418 0.95741 1.13066 1.85780 0.99431 1.95967 1.15442 0.90858 0.75846 0.86845 0.83803 0.81889 0.82116 0.96046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.85 11.72 21.85 0.26 -46.59 15 2 C 0.03 1.84 5.50 85.34 0.47 2.31 15 3 Si 1.00 39.28 29.56 68.60 2.03 41.31 15 4 H -0.25 -9.37 7.11 99.48 0.71 -8.66 15 5 H -0.27 -10.13 7.11 99.48 0.71 -9.43 15 6 H -0.25 -9.40 7.11 99.48 0.71 -8.69 15 7 C -0.56 -31.36 9.30 23.54 0.22 -31.14 15 8 H 0.09 4.44 7.85 -2.91 -0.02 4.42 15 9 C 0.53 30.54 7.36 85.04 0.63 31.16 15 10 O -0.61 -39.46 12.03 -4.76 -0.06 -39.52 15 11 N -0.68 -32.97 5.14 -311.08 -1.60 -34.57 15 12 C 0.21 9.08 6.44 38.59 0.25 9.32 15 13 C -0.18 -8.15 8.70 22.40 0.19 -7.95 15 14 C -0.07 -2.36 10.04 22.30 0.22 -2.13 15 15 C -0.16 -4.42 10.04 22.31 0.22 -4.20 15 16 C -0.04 -1.28 9.79 22.39 0.22 -1.06 15 17 C -0.19 -6.74 6.15 22.88 0.14 -6.60 15 18 S -0.12 -3.80 24.51 -56.49 -1.38 -5.19 15 19 H 0.28 14.87 8.29 -92.71 -0.77 14.10 15 20 H 0.40 17.28 7.61 -92.71 -0.71 16.58 15 21 H 0.11 6.05 5.79 -2.91 -0.02 6.04 15 22 H 0.14 3.98 8.06 -2.91 -0.02 3.96 15 23 H 0.16 2.96 8.06 -2.91 -0.02 2.94 15 24 H 0.16 3.40 8.06 -2.91 -0.02 3.37 15 25 H 0.08 2.05 9.07 73.35 0.67 2.72 15 Total: -1.00 -70.50 240.37 3.01 -67.49 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 1.20 Total: 27.35 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 2.57 Total: -10.28 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -1.34 Total: -81.16 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -0.06 Total: -39.52 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -1.38 Total: -5.19 kcal Total: -70.50 3.01 -67.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034797473.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.432 kcal (2) G-P(sol) polarization free energy of solvation -70.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds