Wall clock time and date at job start Mon Mar 30 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47167 * 273.54201 * 3 2 1 5 5 C 1.46843 * 111.00049 * 294.21375 * 4 3 2 6 6 C 1.53043 * 109.52446 * 174.16274 * 5 4 3 7 7 C 1.53115 * 109.28035 * 59.17281 * 6 5 4 8 8 N 1.46900 * 109.52530 * 182.44333 * 7 6 5 9 9 C 1.46903 * 110.99825 * 274.68537 * 8 7 6 10 10 C 1.50706 * 109.46802 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00253 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99600 * 179.97438 * 10 9 8 13 13 N 1.31508 * 119.99565 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00139 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47140 * 90.00010 * 14 12 10 16 16 H 1.48498 * 109.46840 * 209.99997 * 14 12 10 17 17 H 1.48506 * 109.47196 * 329.99944 * 14 12 10 18 18 C 1.53119 * 109.16391 * 302.35079 * 7 6 5 19 19 C 1.46842 * 111.00041 * 169.99731 * 4 3 2 20 20 H 4.40889 * 5.52257 * 180.02562 * 4 1 2 21 21 H 1.09002 * 109.47120 * 153.54271 * 3 2 1 22 22 H 1.09001 * 109.46952 * 33.54408 * 3 2 1 23 23 H 1.09004 * 109.46019 * 294.17499 * 5 4 3 24 24 H 1.08999 * 109.46883 * 54.14319 * 5 4 3 25 25 H 1.09007 * 109.49669 * 299.23395 * 6 5 4 26 26 H 1.08996 * 109.50102 * 179.12000 * 6 5 4 27 27 H 1.09007 * 109.57302 * 62.28363 * 7 6 5 28 28 H 1.00899 * 111.00003 * 150.73185 * 8 7 6 29 29 H 1.08994 * 109.46936 * 299.99698 * 9 8 7 30 30 H 1.09007 * 109.46947 * 60.00157 * 9 8 7 31 31 H 0.97002 * 120.00232 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.50021 * 297.71564 * 18 7 6 33 33 H 1.09001 * 109.50518 * 177.59261 * 18 7 6 34 34 H 1.08998 * 109.46877 * 305.85973 * 19 4 3 35 35 H 1.09002 * 109.46171 * 65.83843 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.0847 1.3823 5 6 2.7805 1.1208 2.1418 6 6 3.1763 0.9363 3.6086 7 6 4.6832 0.6801 3.6973 8 7 5.0596 0.4442 5.0975 9 6 5.3056 1.7122 5.7973 10 6 5.6877 1.4307 7.2276 11 1 5.7428 0.4117 7.5813 12 6 5.9681 2.4740 8.0844 13 7 6.3020 2.2282 9.3324 14 14 5.8735 4.2363 7.4724 15 1 4.4999 4.7602 7.6823 16 1 6.8428 5.0738 8.2236 17 1 6.2026 4.2760 6.0248 18 6 5.0337 -0.5522 2.8587 19 6 4.5841 -0.3245 1.4136 20 1 -1.0500 -0.0002 0.0001 21 1 3.0089 0.9209 -0.4579 22 1 3.0097 -0.8557 -0.5679 23 1 3.3093 1.9796 1.7282 24 1 1.7057 1.2893 2.0741 25 1 2.6373 0.0861 4.0267 26 1 2.9267 1.8373 4.1689 27 1 5.2240 1.5462 3.3156 28 1 5.8623 -0.1641 5.1586 29 1 6.1157 2.2486 5.3032 30 1 4.4011 2.3203 5.7761 31 1 6.4989 2.9622 9.9353 32 1 4.5240 -1.4258 3.2650 33 1 6.1113 -0.7146 2.8832 34 1 4.8193 -1.2059 0.8170 35 1 5.1045 0.5410 1.0037 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037240294.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:18 Heat of formation + Delta-G solvation = 56.191058 kcal Electronic energy + Delta-G solvation = -14904.207402 eV Core-core repulsion = 12517.416442 eV Total energy + Delta-G solvation = -2386.790960 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.17350 -35.93404 -33.56905 -32.41687 -30.77583 -30.72588 -27.48111 -25.60574 -23.15813 -22.31455 -20.81545 -19.49666 -18.25293 -16.86437 -15.97516 -15.25794 -14.88508 -14.84849 -14.49099 -13.84758 -13.32901 -13.27023 -13.10031 -12.58619 -12.45421 -11.89623 -11.74058 -11.28019 -11.03998 -10.87427 -10.59515 -10.44289 -10.42482 -10.21461 -9.96586 -9.72771 -9.24765 -8.58073 -8.43109 -7.44810 -6.05031 -4.02663 2.58508 2.73116 3.28842 3.35831 3.38117 3.96707 4.28546 4.42453 4.80813 4.94724 5.03214 5.19932 5.22132 5.28041 5.38514 5.47478 5.52690 5.68662 5.82166 5.83942 5.88447 6.02682 6.18192 6.26532 6.46815 6.68237 6.82972 6.96201 7.02930 7.05366 7.50756 7.63645 7.93566 8.37452 8.66984 9.03567 9.57197 11.08384 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.046485 B = 0.005477 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.195402 B = 5111.389036 C = 5365.418706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C 0.161 3.839 4 N -0.534 5.534 5 C 0.057 3.943 6 C -0.103 4.103 7 C 0.083 3.917 8 N -0.675 5.675 9 C 0.165 3.835 10 C -0.515 4.515 11 H 0.079 0.921 12 C 0.068 3.932 13 N -0.901 5.901 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.269 1.269 18 C -0.117 4.117 19 C 0.061 3.939 20 H 0.216 0.784 21 H 0.055 0.945 22 H 0.096 0.904 23 H 0.030 0.970 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.030 0.970 28 H 0.336 0.664 29 H -0.018 1.018 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.269 -3.011 -19.294 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.177 4.177 3 C 0.034 3.966 4 N -0.259 5.259 5 C -0.071 4.071 6 C -0.141 4.141 7 C -0.027 4.027 8 N -0.306 5.306 9 C 0.037 3.963 10 C -0.554 4.554 11 H 0.097 0.903 12 C -0.133 4.133 13 N -0.540 5.540 14 Si 0.704 3.296 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.194 1.194 18 C -0.155 4.155 19 C -0.067 4.067 20 H 0.233 0.767 21 H 0.073 0.927 22 H 0.114 0.886 23 H 0.049 0.951 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.154 0.846 29 H 0.000 1.000 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.053 -3.360 -18.658 20.227 hybrid contribution 0.988 2.017 -0.916 2.425 sum -6.064 -1.343 -19.573 20.535 Atomic orbital electron populations 1.24876 0.95883 1.01513 0.99775 1.22859 0.94217 0.99988 1.00603 1.18993 0.85234 1.01591 0.90785 1.61913 1.14304 1.38762 1.10943 1.22174 1.00564 0.89554 0.94811 1.21570 0.96255 1.02851 0.93450 1.21530 0.95577 0.95608 0.90023 1.60476 1.42840 1.17272 1.10000 1.20030 0.94343 0.87298 0.94632 1.21085 1.45741 0.95676 0.92857 0.90270 1.24904 0.94786 0.98888 0.94739 1.69899 1.47318 1.32071 1.04686 0.86833 0.78233 0.85304 0.79200 1.20130 1.21208 1.19355 1.21772 1.00470 0.99650 0.93635 1.22067 0.86344 1.00267 0.98004 0.76667 0.92692 0.88590 0.95130 0.90789 0.90390 0.91494 0.95235 0.84627 1.00029 0.96070 0.92667 0.90108 0.91565 0.90584 0.94871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.07 19.25 29.55 0.57 -1.50 16 2 C -0.18 -2.02 12.34 -37.12 -0.46 -2.48 16 3 C 0.16 1.67 5.46 -6.61 -0.04 1.63 16 4 N -0.53 -6.68 4.63 -238.18 -1.10 -7.78 16 5 C 0.06 0.77 5.30 -3.83 -0.02 0.75 16 6 C -0.10 -1.67 5.59 -26.65 -0.15 -1.82 16 7 C 0.08 1.41 2.56 -67.59 -0.17 1.24 16 8 N -0.68 -14.11 6.30 -107.85 -0.68 -14.79 16 9 C 0.16 4.06 4.31 -4.97 -0.02 4.04 16 10 C -0.52 -14.94 9.87 -34.44 -0.34 -15.28 16 11 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 14 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 18 C -0.12 -1.60 5.36 -26.65 -0.14 -1.74 16 19 C 0.06 0.71 5.46 -3.84 -0.02 0.68 16 20 H 0.22 1.45 7.80 -54.09 -0.42 1.03 16 21 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 22 H 0.10 0.83 7.99 -51.93 -0.41 0.41 16 23 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.99 7.11 -51.93 -0.37 0.62 16 25 H 0.08 1.35 8.14 -51.92 -0.42 0.92 16 26 H 0.07 1.16 7.54 -51.93 -0.39 0.77 16 27 H 0.03 0.53 7.80 -51.93 -0.41 0.12 16 28 H 0.34 6.76 8.35 -39.29 -0.33 6.43 16 29 H -0.02 -0.45 7.11 -51.93 -0.37 -0.81 16 30 H 0.02 0.53 6.94 -51.93 -0.36 0.17 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.73 8.02 -51.93 -0.42 0.31 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 287.95 15.07 4.34 4.34 Total: -1.00 -31.51 287.95 -7.83 -39.34 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.60 Total: 1.45 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -0.89 Total: -12.55 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -1.01 Total: -49.74 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.51 -7.83 -39.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240294.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.532 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds