Wall clock time and date at job start Mon Mar 30 2020 02:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47167 * 273.54201 * 3 2 1 5 5 C 1.46843 * 111.00049 * 294.21375 * 4 3 2 6 6 C 1.53043 * 109.52446 * 174.16274 * 5 4 3 7 7 C 1.53115 * 109.28035 * 59.17281 * 6 5 4 8 8 N 1.46900 * 109.52530 * 182.44333 * 7 6 5 9 9 C 1.46903 * 110.99825 * 274.68537 * 8 7 6 10 10 C 1.50706 * 109.46802 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00253 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99600 * 179.97438 * 10 9 8 13 13 N 1.31508 * 119.99565 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00139 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47140 * 90.00010 * 14 12 10 16 16 H 1.48498 * 109.46840 * 209.99997 * 14 12 10 17 17 H 1.48506 * 109.47196 * 329.99944 * 14 12 10 18 18 C 1.53119 * 109.16391 * 302.35079 * 7 6 5 19 19 C 1.46842 * 111.00041 * 169.99731 * 4 3 2 20 20 H 4.40889 * 5.52257 * 180.02562 * 4 1 2 21 21 H 1.09002 * 109.47120 * 153.54271 * 3 2 1 22 22 H 1.09001 * 109.46952 * 33.54408 * 3 2 1 23 23 H 1.09004 * 109.46019 * 294.17499 * 5 4 3 24 24 H 1.08999 * 109.46883 * 54.14319 * 5 4 3 25 25 H 1.09007 * 109.49669 * 299.23395 * 6 5 4 26 26 H 1.08996 * 109.50102 * 179.12000 * 6 5 4 27 27 H 1.09007 * 109.57302 * 62.28363 * 7 6 5 28 28 H 1.00899 * 111.00003 * 150.73185 * 8 7 6 29 29 H 1.08994 * 109.46936 * 299.99698 * 9 8 7 30 30 H 1.09007 * 109.46947 * 60.00157 * 9 8 7 31 31 H 0.97002 * 120.00232 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.50021 * 297.71564 * 18 7 6 33 33 H 1.09001 * 109.50518 * 177.59261 * 18 7 6 34 34 H 1.08998 * 109.46877 * 305.85973 * 19 4 3 35 35 H 1.09002 * 109.46171 * 65.83843 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.0847 1.3823 5 6 2.7805 1.1208 2.1418 6 6 3.1763 0.9363 3.6086 7 6 4.6832 0.6801 3.6973 8 7 5.0596 0.4442 5.0975 9 6 5.3056 1.7122 5.7973 10 6 5.6877 1.4307 7.2276 11 1 5.7428 0.4117 7.5813 12 6 5.9681 2.4740 8.0844 13 7 6.3020 2.2282 9.3324 14 14 5.8735 4.2363 7.4724 15 1 4.4999 4.7602 7.6823 16 1 6.8428 5.0738 8.2236 17 1 6.2026 4.2760 6.0248 18 6 5.0337 -0.5522 2.8587 19 6 4.5841 -0.3245 1.4136 20 1 -1.0500 -0.0002 0.0001 21 1 3.0089 0.9209 -0.4579 22 1 3.0097 -0.8557 -0.5679 23 1 3.3093 1.9796 1.7282 24 1 1.7057 1.2893 2.0741 25 1 2.6373 0.0861 4.0267 26 1 2.9267 1.8373 4.1689 27 1 5.2240 1.5462 3.3156 28 1 5.8623 -0.1641 5.1586 29 1 6.1157 2.2486 5.3032 30 1 4.4011 2.3203 5.7761 31 1 6.4989 2.9622 9.9353 32 1 4.5240 -1.4258 3.2650 33 1 6.1113 -0.7146 2.8832 34 1 4.8193 -1.2059 0.8170 35 1 5.1045 0.5410 1.0037 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037240294.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:17 Heat of formation + Delta-G solvation = 33.201696 kcal Electronic energy + Delta-G solvation = -14905.204296 eV Core-core repulsion = 12517.416442 eV Total energy + Delta-G solvation = -2387.787854 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.26842 -37.31902 -35.08068 -34.02096 -32.16142 -31.82808 -29.09987 -26.88294 -24.35784 -23.71672 -22.52182 -20.71675 -19.00864 -18.97019 -17.10667 -16.63012 -16.26986 -16.07497 -15.70955 -15.53058 -14.67083 -14.53766 -14.40108 -14.15231 -13.76676 -13.43546 -13.06417 -12.76045 -12.65744 -12.14705 -12.08992 -11.94807 -11.70021 -11.43014 -11.34341 -11.13829 -11.02432 -10.82210 -9.34065 -9.14497 -8.31743 -6.36194 1.32888 1.34156 1.45179 1.77895 1.95372 2.32114 3.02140 3.08931 3.40394 3.54656 3.86736 3.92174 4.22320 4.25015 4.39880 4.43801 4.58817 4.63284 4.64902 4.74810 4.81279 4.88596 4.96518 5.05384 5.10662 5.14753 5.26906 5.38485 5.54575 5.98042 6.03455 6.09877 6.57166 6.66232 6.74389 6.77444 7.29016 8.85139 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.046485 B = 0.005477 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.195402 B = 5111.389036 C = 5365.418706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.213 4.213 3 C 0.161 3.839 4 N -0.548 5.548 5 C 0.068 3.932 6 C -0.100 4.100 7 C 0.082 3.918 8 N -0.686 5.686 9 C 0.178 3.822 10 C -0.529 4.529 11 H 0.037 0.963 12 C 0.009 3.991 13 N -0.947 5.947 14 Si 0.950 3.050 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.253 1.253 18 C -0.111 4.111 19 C 0.065 3.935 20 H 0.242 0.758 21 H 0.066 0.934 22 H 0.115 0.885 23 H 0.037 0.963 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.028 0.972 28 H 0.338 0.662 29 H -0.016 1.016 30 H 0.020 0.980 31 H 0.268 0.732 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.651 -2.183 -21.861 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.213 4.213 3 C 0.035 3.965 4 N -0.273 5.273 5 C -0.061 4.061 6 C -0.138 4.138 7 C -0.028 4.028 8 N -0.316 5.316 9 C 0.049 3.951 10 C -0.568 4.568 11 H 0.056 0.944 12 C -0.189 4.189 13 N -0.587 5.587 14 Si 0.774 3.226 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.177 1.177 18 C -0.149 4.149 19 C -0.062 4.062 20 H 0.259 0.741 21 H 0.084 0.916 22 H 0.133 0.867 23 H 0.055 0.945 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.156 0.844 29 H 0.002 0.998 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.440 -2.552 -21.251 22.660 hybrid contribution 1.063 1.639 -0.087 1.956 sum -6.377 -0.913 -21.338 22.289 Atomic orbital electron populations 1.25677 0.96865 1.00536 0.98521 1.23362 0.95153 1.01020 1.01765 1.19095 0.84844 1.03032 0.89538 1.61861 1.14966 1.38030 1.12408 1.21986 1.00606 0.90473 0.93010 1.21505 0.95599 1.01318 0.95424 1.21653 0.95842 0.97293 0.88047 1.60385 1.42903 1.15638 1.12703 1.19745 0.93950 0.88919 0.92446 1.21360 1.45979 0.94040 0.95382 0.94418 1.25870 0.94131 1.04121 0.94729 1.70049 1.48504 1.33894 1.06260 0.85669 0.78763 0.78805 0.79405 1.19107 1.20364 1.17650 1.21716 1.01216 0.97353 0.94594 1.22075 0.85844 1.01857 0.96461 0.74117 0.91569 0.86664 0.94526 0.90777 0.91975 0.93132 0.95406 0.84404 0.99812 0.96187 0.92296 0.91084 0.90381 0.87964 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.62 19.25 74.32 1.43 -2.19 16 2 C -0.21 -4.42 12.34 31.13 0.38 -4.04 16 3 C 0.16 2.90 5.46 84.50 0.46 3.36 16 4 N -0.55 -12.38 4.63 -907.47 -4.21 -16.58 16 5 C 0.07 1.73 5.30 86.33 0.46 2.18 16 6 C -0.10 -3.19 5.59 30.65 0.17 -3.02 16 7 C 0.08 2.69 2.56 44.99 0.12 2.81 16 8 N -0.69 -28.74 6.30 -495.14 -3.12 -31.86 16 9 C 0.18 8.76 4.31 85.56 0.37 9.13 16 10 C -0.53 -31.44 9.87 25.60 0.25 -31.19 16 11 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 12 C 0.01 0.54 5.47 84.66 0.46 1.00 16 13 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 14 Si 0.95 44.79 27.47 68.60 1.88 46.67 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 17 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 18 C -0.11 -2.83 5.36 30.65 0.16 -2.66 16 19 C 0.07 1.31 5.46 86.33 0.47 1.78 16 20 H 0.24 2.61 7.80 -4.42 -0.03 2.58 16 21 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 22 H 0.12 1.60 7.99 -2.39 -0.02 1.58 16 23 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.07 1.88 7.11 -2.39 -0.02 1.87 16 25 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 26 H 0.05 1.74 7.54 -2.39 -0.02 1.72 16 27 H 0.03 0.95 7.80 -2.38 -0.02 0.93 16 28 H 0.34 13.73 8.35 -89.69 -0.75 12.98 16 29 H -0.02 -0.76 7.11 -2.39 -0.02 -0.78 16 30 H 0.02 0.99 6.94 -2.38 -0.02 0.98 16 31 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 1.56 8.02 -2.39 -0.02 1.54 16 35 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -68.63 287.95 -0.16 -68.78 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.25 Total: 15.49 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 4.74 Total: -22.83 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -7.03 Total: -108.11 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -68.63 -0.16 -68.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240294.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.983 kcal (2) G-P(sol) polarization free energy of solvation -68.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds