Wall clock time and date at job start Mon Mar 30 2020 02:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46851 * 2 1 4 4 H 1.08999 * 109.47363 * 55.41947 * 3 2 1 5 5 C 1.53001 * 109.46820 * 175.41765 * 3 2 1 6 6 C 1.47198 * 109.47258 * 187.54962 * 5 3 2 7 7 N 4.86038 * 126.34641 * 6.42142 * 2 1 3 8 8 N 1.46898 * 109.47133 * 295.41529 * 3 2 1 9 9 C 1.46899 * 110.99850 * 163.45683 * 8 3 2 10 10 C 1.50706 * 109.46797 * 296.14144 * 9 8 3 11 11 H 1.08000 * 120.00020 * 4.72425 * 10 9 8 12 12 C 1.37875 * 119.99977 * 184.72115 * 10 9 8 13 13 N 1.31519 * 120.00174 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00144 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47224 * 89.99947 * 14 12 10 16 16 H 1.48503 * 109.47389 * 210.00271 * 14 12 10 17 17 H 1.48508 * 109.47024 * 330.00052 * 14 12 10 18 18 C 1.46907 * 111.00131 * 287.40525 * 8 3 2 19 19 C 1.53000 * 117.49896 * 246.34136 * 18 8 3 20 20 C 1.52996 * 117.49635 * 177.68030 * 18 8 3 21 21 H 1.09000 * 109.47458 * 55.11289 * 1 2 3 22 22 H 1.09002 * 109.47070 * 175.11037 * 1 2 3 23 23 H 1.08997 * 109.47197 * 295.10924 * 1 2 3 24 24 H 1.09001 * 109.47341 * 240.00515 * 2 1 3 25 25 H 1.08997 * 109.47254 * 119.99942 * 2 1 3 26 26 H 1.08999 * 109.47484 * 307.54525 * 5 3 2 27 27 H 1.09001 * 109.47282 * 67.54985 * 5 3 2 28 28 H 1.09000 * 109.47656 * 56.14148 * 9 8 3 29 29 H 1.08998 * 109.46900 * 176.14872 * 9 8 3 30 30 H 0.96996 * 120.00146 * 180.02562 * 13 12 10 31 31 H 1.08999 * 115.54479 * 32.01097 * 18 8 3 32 32 H 1.08999 * 117.49863 * 0.02562 * 19 18 8 33 33 H 1.08996 * 117.49737 * 145.02227 * 19 18 8 34 34 H 1.09004 * 117.49376 * 214.98170 * 20 18 8 35 35 H 1.08994 * 117.50460 * 0.02562 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6111 1.9796 0.8461 5 6 3.5655 1.4441 0.1152 6 6 4.0425 2.8247 0.2973 7 7 4.4105 3.8902 0.4378 8 7 1.6427 2.1024 -1.2509 9 6 1.7582 3.5623 -1.1358 10 6 0.7936 4.0616 -0.0911 11 1 0.2134 3.3586 0.4882 12 6 0.6517 5.4159 0.1250 13 7 1.3579 6.2720 -0.5807 14 14 -0.5434 6.0349 1.4204 15 1 0.1571 6.1520 2.7245 16 1 -1.0649 7.3656 1.0172 17 1 -1.6726 5.0790 1.5491 18 6 2.4305 1.5998 -2.3844 19 6 3.3889 2.5775 -3.0674 20 6 2.0999 2.1494 -3.7734 21 1 -0.3634 0.5878 -0.8430 22 1 -0.3633 -1.0239 -0.0876 23 1 -0.3633 0.4361 0.9305 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8659 0.8402 0.9715 27 1 3.9990 1.0269 -0.7937 28 1 2.7757 3.8246 -0.8458 29 1 1.5240 4.0221 -2.0959 30 1 1.2584 7.2248 -0.4284 31 1 2.7396 0.5567 -2.3163 32 1 3.4351 3.5935 -2.6755 33 1 4.3283 2.1776 -3.4491 34 1 2.1919 1.4680 -4.6193 35 1 1.2982 2.8842 -3.8463 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042531105.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:33 Heat of formation + Delta-G solvation = 62.262353 kcal Electronic energy + Delta-G solvation = -15946.776680 eV Core-core repulsion = 13560.248991 eV Total energy + Delta-G solvation = -2386.527689 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.14566 -35.82442 -34.71682 -32.92299 -31.02726 -29.62032 -26.54668 -24.02238 -22.57882 -21.76693 -21.15013 -18.42288 -16.96810 -16.40003 -15.95460 -14.89637 -14.53578 -14.13364 -13.70009 -13.58320 -12.49850 -12.41514 -12.29977 -11.98593 -11.77066 -11.63656 -11.33553 -11.22518 -10.92861 -10.76806 -10.69664 -10.56379 -10.32404 -10.00961 -9.94078 -9.86947 -9.57825 -9.02910 -8.37686 -7.05113 -5.96982 -3.97828 3.33696 3.40124 3.42736 3.56900 3.57243 4.34304 4.47507 4.65877 4.82805 5.29244 5.39035 5.44770 5.50771 5.54950 5.63182 5.72488 5.74408 5.82963 5.98896 6.16511 6.18801 6.29953 6.38313 6.43860 6.60714 6.75341 6.77902 6.92570 7.32825 7.41652 7.80589 8.10644 8.20427 8.39809 8.55357 9.07321 9.65285 11.13473 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.022068 B = 0.011308 C = 0.010311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.481807 B = 2475.475087 C = 2714.889353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C 0.090 3.910 4 H 0.103 0.897 5 C -0.057 4.057 6 C 0.202 3.798 7 N -0.417 5.417 8 N -0.493 5.493 9 C 0.169 3.831 10 C -0.510 4.510 11 H 0.061 0.939 12 C 0.061 3.939 13 N -0.889 5.889 14 Si 0.890 3.110 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.025 3.975 19 C -0.227 4.227 20 C -0.174 4.174 21 H 0.073 0.927 22 H 0.038 0.962 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.022 0.978 29 H 0.032 0.968 30 H 0.260 0.740 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 -13.335 -1.041 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.021 4.021 4 H 0.121 0.879 5 C -0.099 4.099 6 C -0.115 4.115 7 N -0.094 5.094 8 N -0.214 5.214 9 C 0.044 3.956 10 C -0.549 4.549 11 H 0.079 0.921 12 C -0.142 4.142 13 N -0.528 5.528 14 Si 0.719 3.281 15 H -0.209 1.209 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.085 4.085 19 C -0.267 4.267 20 C -0.211 4.211 21 H 0.092 0.908 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.039 0.961 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.324 -11.639 -0.923 11.904 hybrid contribution 0.025 0.389 0.625 0.736 sum 2.349 -11.250 -0.298 11.496 Atomic orbital electron populations 1.21622 0.95143 1.00100 1.03094 1.21524 0.97133 0.95154 1.00811 1.21817 0.88920 0.95585 0.95733 0.87893 1.20052 0.99796 0.85903 1.04125 1.28644 0.93829 0.94926 0.94094 1.81219 1.09692 1.10695 1.07803 1.62143 1.50062 1.09108 1.00124 1.20255 0.97545 0.79901 0.97925 1.21074 1.23162 0.91338 1.19316 0.92084 1.24920 0.96002 0.96942 0.96294 1.69951 1.40569 1.02025 1.40270 0.86618 0.81407 0.78247 0.81870 1.20909 1.21334 1.19766 1.22607 0.98043 0.96415 0.91452 1.23574 0.93653 1.02645 1.06791 1.22974 0.99323 1.03837 0.95013 0.90763 0.94245 0.93281 0.92342 0.92393 0.88279 0.88231 0.96051 0.94983 0.93077 0.87413 0.87786 0.90156 0.89637 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.85 37.15 0.37 -1.60 16 2 C -0.11 -1.38 5.41 -26.73 -0.14 -1.52 16 3 C 0.09 1.47 1.75 -67.71 -0.12 1.35 16 4 H 0.10 1.99 6.30 -51.93 -0.33 1.66 16 5 C -0.06 -0.82 4.87 -29.52 -0.14 -0.96 16 6 C 0.20 3.95 12.58 -20.76 -0.26 3.69 16 7 N -0.42 -9.71 17.52 42.15 0.74 -8.97 16 8 N -0.49 -9.53 3.99 -220.14 -0.88 -10.40 16 9 C 0.17 4.16 3.01 -4.97 -0.01 4.15 16 10 C -0.51 -13.96 8.37 -34.44 -0.29 -14.25 16 11 H 0.06 1.64 6.92 -52.49 -0.36 1.27 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 14 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 15 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 C 0.02 0.41 4.11 -67.71 -0.28 0.13 16 19 C -0.23 -3.94 9.52 -26.69 -0.25 -4.19 16 20 C -0.17 -2.87 9.95 -26.69 -0.27 -3.13 16 21 H 0.07 1.20 7.61 -51.93 -0.40 0.81 16 22 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.67 6.70 -51.93 -0.35 0.33 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.10 1.07 8.13 -51.93 -0.42 0.65 16 27 H 0.10 1.25 6.24 -51.93 -0.32 0.92 16 28 H 0.02 0.56 3.16 -51.93 -0.16 0.40 16 29 H 0.03 0.89 6.33 -51.93 -0.33 0.56 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.11 1.45 6.21 -51.93 -0.32 1.12 16 32 H 0.10 2.24 5.95 -51.93 -0.31 1.93 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.10 1.82 7.40 -51.93 -0.38 1.44 16 LS Contribution 280.51 15.07 4.23 4.23 Total: -1.00 -31.55 280.51 -6.63 -38.18 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.94 Total: 0.84 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.50 Total: -14.70 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.60 Total: -45.59 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.55 -6.63 -38.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531105.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.443 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds