Wall clock time and date at job start Mon Mar 30 2020 02:49:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52996 * 109.47060 * 2 1
4 4 H 1.09001 * 109.47721 * 54.64900 * 3 2 1
5 5 C 1.52998 * 109.47025 * 294.64447 * 3 2 1
6 6 C 1.47199 * 109.47427 * 175.00246 * 5 3 2
7 7 N 4.86388 * 99.39995 * 345.21346 * 2 1 3
8 8 N 1.46907 * 109.47031 * 174.64984 * 3 2 1
9 9 C 1.46900 * 110.99896 * 289.01214 * 8 3 2
10 10 C 1.50701 * 109.46907 * 289.14552 * 9 8 3
11 11 H 1.08003 * 120.00243 * 4.74615 * 10 9 8
12 12 C 1.37872 * 119.99906 * 184.73774 * 10 9 8
13 13 N 1.31514 * 120.00246 * 0.02562 * 12 10 9
14 14 Si 1.86810 * 119.99843 * 179.97438 * 12 10 9
15 15 H 1.48500 * 109.46906 * 90.00526 * 14 12 10
16 16 H 1.48505 * 109.46832 * 210.00405 * 14 12 10
17 17 H 1.48497 * 109.47051 * 330.00334 * 14 12 10
18 18 C 1.46902 * 110.99896 * 52.96161 * 8 3 2
19 19 C 1.52998 * 117.50070 * 242.93397 * 18 8 3
20 20 C 1.52994 * 117.49631 * 174.27091 * 18 8 3
21 21 H 1.08997 * 109.47404 * 65.83177 * 1 2 3
22 22 H 1.09001 * 109.47378 * 185.83506 * 1 2 3
23 23 H 1.09008 * 109.46978 * 305.83393 * 1 2 3
24 24 H 1.08995 * 109.46647 * 239.99608 * 2 1 3
25 25 H 1.09004 * 109.47071 * 119.99652 * 2 1 3
26 26 H 1.08997 * 109.47600 * 295.00269 * 5 3 2
27 27 H 1.09007 * 109.47225 * 55.00335 * 5 3 2
28 28 H 1.09002 * 109.47224 * 49.14512 * 9 8 3
29 29 H 1.08995 * 109.47050 * 169.15086 * 9 8 3
30 30 H 0.97003 * 119.99961 * 179.97438 * 13 12 10
31 31 H 1.09006 * 115.54869 * 28.60724 * 18 8 3
32 32 H 1.08998 * 117.49564 * 359.97438 * 19 18 8
33 33 H 1.08994 * 117.49939 * 145.01944 * 19 18 8
34 34 H 1.09001 * 117.49920 * 214.98296 * 20 18 8
35 35 H 1.08996 * 117.49832 * 0.02562 * 20 18 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6006 1.9833 0.8382
5 6 1.6429 2.1238 -1.3111
6 6 2.0275 3.5438 -1.2624
7 7 2.3244 4.6397 -1.2247
8 7 3.5034 1.4445 0.1291
9 6 3.9131 1.0389 1.4803
10 6 3.5692 2.1322 2.4588
11 1 3.0256 3.0039 2.1256
12 6 3.9485 2.0196 3.7796
13 7 4.6109 0.9584 4.1854
14 14 3.5229 3.3752 4.9924
15 1 2.2006 3.0927 5.6065
16 1 4.5596 3.4329 6.0541
17 1 3.4701 4.6775 4.2807
18 6 4.1229 0.5855 -0.8889
19 6 4.9144 -0.6297 -0.4013
20 6 5.6503 0.5830 -0.9766
21 1 -0.3634 0.4207 -0.9375
22 1 -0.3634 -1.0223 0.1045
23 1 -0.3633 0.6017 0.8332
24 1 1.8932 -0.5139 -0.8899
25 1 1.8933 -0.5138 0.8901
26 1 2.1532 1.6375 -2.1424
27 1 0.5646 2.0440 -1.4500
28 1 3.3905 0.1240 1.7593
29 1 4.9886 0.8623 1.4961
30 1 4.8781 0.8794 5.1145
31 1 3.5651 0.4824 -1.8197
32 1 4.9758 -0.7915 0.6748
33 1 4.8776 -1.5321 -1.0115
34 1 6.0974 0.4779 -1.9651
35 1 6.1955 1.2184 -0.2788
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000042531106.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:35
Heat of formation + Delta-G solvation = 50.585097 kcal
Electronic energy + Delta-G solvation = -15621.302085 eV
Core-core repulsion = 13234.268032 eV
Total energy + Delta-G solvation = -2387.034053 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 222.143 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-38.99060 -36.18649 -34.83166 -33.00407 -31.12083 -29.68498 -26.61906 -24.05378
-22.77321 -21.80557 -21.07168 -18.56343 -17.29926 -16.45177 -15.67944 -15.09195
-14.32619 -14.12314 -13.84411 -13.56352 -13.32278 -12.47817 -12.31505 -12.07004
-11.90752 -11.70166 -11.50420 -11.18367 -11.01545 -10.90278 -10.77589 -10.72415
-10.51734 -10.11172 -10.01261 -9.86583 -9.59791 -9.11078 -8.43663 -7.13859
-6.04598 -4.05208 3.31082 3.32816 3.35660 3.38029 3.44326 4.32575
4.45074 4.50625 4.81704 5.20648 5.31265 5.36253 5.41886 5.48066
5.57225 5.59708 5.70107 5.73252 5.80550 6.06765 6.17310 6.18909
6.27656 6.35998 6.55333 6.60511 6.70600 6.78154 7.24230 7.31235
7.77865 8.06393 8.12413 8.17332 8.49841 9.01709 9.59122 11.05779
Molecular weight = 222.14amu
Principal moments of inertia in cm(-1)
A = 0.019540 B = 0.010458 C = 0.009243
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1432.590754 B = 2676.717911 C = 3028.683943
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.150 4.150
3 C 0.094 3.906
4 H 0.100 0.900
5 C -0.024 4.024
6 C 0.227 3.773
7 N -0.451 5.451
8 N -0.500 5.500
9 C 0.190 3.810
10 C -0.507 4.507
11 H 0.060 0.940
12 C 0.058 3.942
13 N -0.897 5.897
14 Si 0.893 3.107
15 H -0.281 1.281
16 H -0.287 1.287
17 H -0.273 1.273
18 C 0.024 3.976
19 C -0.221 4.221
20 C -0.177 4.177
21 H 0.051 0.949
22 H 0.049 0.951
23 H 0.057 0.943
24 H 0.060 0.940
25 H 0.077 0.923
26 H 0.100 0.900
27 H 0.105 0.895
28 H 0.000 1.000
29 H 0.039 0.961
30 H 0.261 0.739
31 H 0.105 0.895
32 H 0.108 0.892
33 H 0.080 0.920
34 H 0.084 0.916
35 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.946 -4.839 -10.174 12.739
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.189 4.189
3 C -0.016 4.016
4 H 0.118 0.882
5 C -0.064 4.064
6 C -0.091 4.091
7 N -0.128 5.128
8 N -0.221 5.221
9 C 0.066 3.934
10 C -0.545 4.545
11 H 0.078 0.922
12 C -0.143 4.143
13 N -0.537 5.537
14 Si 0.721 3.279
15 H -0.207 1.207
16 H -0.212 1.212
17 H -0.198 1.198
18 C -0.086 4.086
19 C -0.260 4.260
20 C -0.215 4.215
21 H 0.070 0.930
22 H 0.068 0.932
23 H 0.076 0.924
24 H 0.079 0.921
25 H 0.095 0.905
26 H 0.118 0.882
27 H 0.123 0.877
28 H 0.018 0.982
29 H 0.057 0.943
30 H 0.071 0.929
31 H 0.123 0.877
32 H 0.126 0.874
33 H 0.099 0.901
34 H 0.103 0.897
35 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -5.250 -2.751 -10.019 11.641
hybrid contribution -0.367 -0.650 0.940 1.200
sum -5.618 -3.401 -9.079 11.205
Atomic orbital electron populations
1.21800 0.96155 1.01348 1.01524 1.22171 0.95763 0.98034 1.02898
1.21663 0.89752 0.94424 0.95783 0.88184 1.19549 1.02202 0.83626
1.01044 1.28847 0.92779 0.94671 0.92798 1.81109 1.09183 1.13604
1.08889 1.62230 1.05071 1.49088 1.05730 1.19872 0.96649 0.95151
0.81762 1.21143 1.35785 1.04991 0.92609 0.92180 1.24924 0.95229
0.95799 0.98352 1.69940 1.39098 1.28034 1.16632 0.86574 0.77993
0.82553 0.80826 1.20699 1.21242 1.19814 1.22572 0.92973 0.95706
0.97328 1.23578 1.07338 0.92477 1.02595 1.22997 0.95357 1.01605
1.01585 0.92966 0.93221 0.92412 0.92096 0.90484 0.88225 0.87688
0.98206 0.94311 0.92943 0.87741 0.87409 0.90141 0.89712 0.88568
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.70 9.53 37.16 0.35 -1.35 16
2 C -0.15 -2.09 4.83 -26.73 -0.13 -2.22 16
3 C 0.09 1.53 1.62 -67.71 -0.11 1.42 16
4 H 0.10 1.90 6.91 -51.93 -0.36 1.54 16
5 C -0.02 -0.30 5.01 -29.52 -0.15 -0.45 16
6 C 0.23 3.82 15.15 -20.76 -0.31 3.50 16
7 N -0.45 -8.97 18.54 42.15 0.78 -8.19 16
8 N -0.50 -9.78 4.31 -220.14 -0.95 -10.73 16
9 C 0.19 4.59 3.26 -4.98 -0.02 4.57 16
10 C -0.51 -13.85 8.50 -34.44 -0.29 -14.14 16
11 H 0.06 1.68 7.35 -52.48 -0.39 1.29 16
12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
13 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16
14 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16
15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
17 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16
18 C 0.02 0.40 4.40 -67.72 -0.30 0.10 16
19 C -0.22 -3.63 9.54 -26.69 -0.25 -3.89 16
20 C -0.18 -2.94 9.96 -26.69 -0.27 -3.20 16
21 H 0.05 0.47 6.76 -51.93 -0.35 0.12 16
22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
23 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16
24 H 0.06 0.76 6.97 -51.93 -0.36 0.39 16
25 H 0.08 1.31 6.38 -51.93 -0.33 0.98 16
26 H 0.10 1.06 6.35 -51.93 -0.33 0.73 16
27 H 0.11 0.99 6.48 -51.93 -0.34 0.65 16
28 H 0.00 0.01 6.03 -51.93 -0.31 -0.31 16
29 H 0.04 1.03 5.89 -51.93 -0.31 0.72 16
30 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16
31 H 0.10 1.40 5.97 -51.93 -0.31 1.09 16
32 H 0.11 2.11 5.93 -51.93 -0.31 1.80 16
33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16
34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16
35 H 0.10 1.84 7.66 -51.93 -0.40 1.44 16
LS Contribution 283.81 15.07 4.28 4.28
Total: -1.00 -30.66 283.81 -6.66 -37.33
By element:
Atomic # 1 Polarization: 4.87 SS G_CDS: -4.92 Total: -0.04 kcal
Atomic # 6 Polarization: -12.56 SS G_CDS: -1.57 Total: -14.13 kcal
Atomic # 7 Polarization: -44.79 SS G_CDS: 0.57 Total: -44.22 kcal
Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal
Total LS contribution 4.28 Total: 4.28 kcal
Total: -30.66 -6.66 -37.33 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042531106.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.910 kcal
(2) G-P(sol) polarization free energy of solvation -30.663 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.247 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.585 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds