Wall clock time and date at job start Mon Mar 30 2020 02:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47060 * 2 1 4 4 H 1.09001 * 109.47721 * 54.64900 * 3 2 1 5 5 C 1.52998 * 109.47025 * 294.64447 * 3 2 1 6 6 C 1.47199 * 109.47427 * 175.00246 * 5 3 2 7 7 N 4.86388 * 99.39995 * 345.21346 * 2 1 3 8 8 N 1.46907 * 109.47031 * 174.64984 * 3 2 1 9 9 C 1.46900 * 110.99896 * 289.01214 * 8 3 2 10 10 C 1.50701 * 109.46907 * 289.14552 * 9 8 3 11 11 H 1.08003 * 120.00243 * 4.74615 * 10 9 8 12 12 C 1.37872 * 119.99906 * 184.73774 * 10 9 8 13 13 N 1.31514 * 120.00246 * 0.02562 * 12 10 9 14 14 Si 1.86810 * 119.99843 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46906 * 90.00526 * 14 12 10 16 16 H 1.48505 * 109.46832 * 210.00405 * 14 12 10 17 17 H 1.48497 * 109.47051 * 330.00334 * 14 12 10 18 18 C 1.46902 * 110.99896 * 52.96161 * 8 3 2 19 19 C 1.52998 * 117.50070 * 242.93397 * 18 8 3 20 20 C 1.52994 * 117.49631 * 174.27091 * 18 8 3 21 21 H 1.08997 * 109.47404 * 65.83177 * 1 2 3 22 22 H 1.09001 * 109.47378 * 185.83506 * 1 2 3 23 23 H 1.09008 * 109.46978 * 305.83393 * 1 2 3 24 24 H 1.08995 * 109.46647 * 239.99608 * 2 1 3 25 25 H 1.09004 * 109.47071 * 119.99652 * 2 1 3 26 26 H 1.08997 * 109.47600 * 295.00269 * 5 3 2 27 27 H 1.09007 * 109.47225 * 55.00335 * 5 3 2 28 28 H 1.09002 * 109.47224 * 49.14512 * 9 8 3 29 29 H 1.08995 * 109.47050 * 169.15086 * 9 8 3 30 30 H 0.97003 * 119.99961 * 179.97438 * 13 12 10 31 31 H 1.09006 * 115.54869 * 28.60724 * 18 8 3 32 32 H 1.08998 * 117.49564 * 359.97438 * 19 18 8 33 33 H 1.08994 * 117.49939 * 145.01944 * 19 18 8 34 34 H 1.09001 * 117.49920 * 214.98296 * 20 18 8 35 35 H 1.08996 * 117.49832 * 0.02562 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6006 1.9833 0.8382 5 6 1.6429 2.1238 -1.3111 6 6 2.0275 3.5438 -1.2624 7 7 2.3244 4.6397 -1.2247 8 7 3.5034 1.4445 0.1291 9 6 3.9131 1.0389 1.4803 10 6 3.5692 2.1322 2.4588 11 1 3.0256 3.0039 2.1256 12 6 3.9485 2.0196 3.7796 13 7 4.6109 0.9584 4.1854 14 14 3.5229 3.3752 4.9924 15 1 2.2006 3.0927 5.6065 16 1 4.5596 3.4329 6.0541 17 1 3.4701 4.6775 4.2807 18 6 4.1229 0.5855 -0.8889 19 6 4.9144 -0.6297 -0.4013 20 6 5.6503 0.5830 -0.9766 21 1 -0.3634 0.4207 -0.9375 22 1 -0.3634 -1.0223 0.1045 23 1 -0.3633 0.6017 0.8332 24 1 1.8932 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.1532 1.6375 -2.1424 27 1 0.5646 2.0440 -1.4500 28 1 3.3905 0.1240 1.7593 29 1 4.9886 0.8623 1.4961 30 1 4.8781 0.8794 5.1145 31 1 3.5651 0.4824 -1.8197 32 1 4.9758 -0.7915 0.6748 33 1 4.8776 -1.5321 -1.0115 34 1 6.0974 0.4779 -1.9651 35 1 6.1955 1.2184 -0.2788 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042531106.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:35 Heat of formation + Delta-G solvation = 30.702799 kcal Electronic energy + Delta-G solvation = -15622.164246 eV Core-core repulsion = 13234.268032 eV Total energy + Delta-G solvation = -2387.896214 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.38626 -37.54111 -36.13235 -35.03485 -32.62431 -30.91673 -28.48916 -25.30878 -24.55245 -23.14096 -22.34876 -20.02664 -18.82345 -18.04688 -17.27345 -16.71001 -16.14280 -15.39720 -15.08541 -14.79177 -14.60132 -14.34045 -13.76716 -13.48067 -13.35182 -13.12273 -12.94120 -12.71343 -12.67019 -12.45222 -12.28120 -12.13942 -11.93160 -11.69351 -11.46783 -11.23788 -11.01546 -10.94082 -10.58649 -8.67617 -8.20606 -6.28491 1.33924 1.35874 1.46663 2.01365 2.06763 2.36558 2.98797 3.11548 3.29502 3.49172 4.00928 4.15867 4.20834 4.26769 4.37530 4.48591 4.59253 4.66861 4.80167 4.89434 4.98537 5.01413 5.17739 5.21944 5.24397 5.36090 5.41715 5.42335 5.53465 5.63230 5.67011 6.10917 6.45672 6.74601 6.86979 6.89202 7.40058 8.88692 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.019540 B = 0.010458 C = 0.009243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.590754 B = 2676.717911 C = 3028.683943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.091 3.909 4 H 0.063 0.937 5 C -0.015 4.015 6 C 0.245 3.755 7 N -0.514 5.514 8 N -0.520 5.520 9 C 0.214 3.786 10 C -0.519 4.519 11 H 0.048 0.952 12 C 0.008 3.992 13 N -0.928 5.928 14 Si 0.953 3.047 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.278 1.278 18 C 0.025 3.975 19 C -0.217 4.217 20 C -0.182 4.182 21 H 0.087 0.913 22 H 0.058 0.942 23 H 0.041 0.959 24 H 0.088 0.912 25 H 0.035 0.965 26 H 0.137 0.863 27 H 0.152 0.848 28 H -0.018 1.018 29 H 0.005 0.995 30 H 0.263 0.737 31 H 0.152 0.848 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.538 -5.538 -12.468 15.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C -0.018 4.018 4 H 0.082 0.918 5 C -0.055 4.055 6 C -0.071 4.071 7 N -0.192 5.192 8 N -0.241 5.241 9 C 0.089 3.911 10 C -0.557 4.557 11 H 0.066 0.934 12 C -0.190 4.190 13 N -0.569 5.569 14 Si 0.778 3.222 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.203 1.203 18 C -0.084 4.084 19 C -0.256 4.256 20 C -0.220 4.220 21 H 0.106 0.894 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.054 0.946 26 H 0.154 0.846 27 H 0.169 0.831 28 H 0.000 1.000 29 H 0.023 0.977 30 H 0.072 0.928 31 H 0.170 0.830 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.857 -3.453 -12.321 14.517 hybrid contribution 0.141 -0.469 1.643 1.715 sum -6.716 -3.922 -10.677 13.209 Atomic orbital electron populations 1.21794 0.93749 1.02104 1.02823 1.22037 0.97771 0.95817 1.02184 1.21670 0.87414 0.96039 0.96723 0.91839 1.19843 1.05393 0.80582 0.99654 1.29666 0.91079 0.95344 0.90995 1.81127 1.11432 1.15829 1.10854 1.62054 1.07713 1.50330 1.03971 1.19340 0.94223 0.93328 0.84259 1.21456 1.35274 1.05282 0.93706 0.93385 1.25696 0.95268 0.97872 1.00154 1.70048 1.40149 1.29654 1.17045 0.85636 0.78335 0.79499 0.78691 1.19361 1.20636 1.20314 1.22862 0.93011 0.94735 0.97776 1.23462 1.07537 0.93929 1.00678 1.23032 0.95609 1.00992 1.02393 0.89402 0.92249 0.93936 0.89351 0.94595 0.84575 0.83081 1.00000 0.97666 0.92815 0.83045 0.91643 0.86626 0.86100 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.53 71.98 0.69 -2.14 16 2 C -0.14 -3.57 4.83 30.59 0.15 -3.42 16 3 C 0.09 2.83 1.62 44.91 0.07 2.90 16 4 H 0.06 2.43 6.91 -2.39 -0.02 2.41 16 5 C -0.02 -0.32 5.01 28.79 0.14 -0.18 16 6 C 0.25 7.78 15.15 89.44 1.35 9.14 16 7 N -0.51 -20.21 18.54 20.01 0.37 -19.84 16 8 N -0.52 -20.23 4.31 -850.40 -3.66 -23.90 16 9 C 0.21 10.84 3.26 85.56 0.28 11.12 16 10 C -0.52 -29.52 8.50 25.60 0.22 -29.30 16 11 H 0.05 2.79 7.35 -2.91 -0.02 2.77 16 12 C 0.01 0.48 5.46 84.65 0.46 0.95 16 13 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 14 Si 0.95 45.83 29.54 68.60 2.03 47.85 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 17 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 18 C 0.03 0.77 4.40 44.91 0.20 0.97 16 19 C -0.22 -6.93 9.54 30.62 0.29 -6.64 16 20 C -0.18 -5.84 9.96 30.62 0.31 -5.54 16 21 H 0.09 1.08 6.76 -2.39 -0.02 1.07 16 22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.09 1.78 6.97 -2.39 -0.02 1.77 16 25 H 0.04 1.22 6.38 -2.38 -0.02 1.21 16 26 H 0.14 2.01 6.35 -2.39 -0.02 1.99 16 27 H 0.15 1.92 6.48 -2.38 -0.02 1.91 16 28 H -0.02 -0.94 6.03 -2.39 -0.01 -0.95 16 29 H 0.01 0.30 5.89 -2.39 -0.01 0.28 16 30 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.15 3.19 5.97 -2.38 -0.01 3.18 16 32 H 0.06 2.68 5.93 -2.39 -0.01 2.66 16 33 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.06 2.28 7.66 -2.39 -0.02 2.26 16 Total: -1.00 -72.12 283.81 4.26 -67.86 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.08 Total: 5.68 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 4.16 Total: -22.15 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -3.01 Total: -99.25 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -72.12 4.26 -67.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531106.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.567 kcal (2) G-P(sol) polarization free energy of solvation -72.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds