Wall clock time and date at job start Mon Mar 30 2020 02:49:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52996 * 109.47060 * 2 1
4 4 H 1.09001 * 109.47721 * 54.64900 * 3 2 1
5 5 C 1.52998 * 109.47025 * 294.64447 * 3 2 1
6 6 C 1.47199 * 109.47427 * 175.00246 * 5 3 2
7 7 N 4.86388 * 99.39995 * 345.21346 * 2 1 3
8 8 N 1.46907 * 109.47031 * 174.64984 * 3 2 1
9 9 C 1.46900 * 110.99896 * 289.01214 * 8 3 2
10 10 C 1.50701 * 109.46907 * 289.14552 * 9 8 3
11 11 H 1.08003 * 120.00243 * 4.74615 * 10 9 8
12 12 C 1.37872 * 119.99906 * 184.73774 * 10 9 8
13 13 N 1.31514 * 120.00246 * 0.02562 * 12 10 9
14 14 Si 1.86810 * 119.99843 * 179.97438 * 12 10 9
15 15 H 1.48500 * 109.46906 * 90.00526 * 14 12 10
16 16 H 1.48505 * 109.46832 * 210.00405 * 14 12 10
17 17 H 1.48497 * 109.47051 * 330.00334 * 14 12 10
18 18 C 1.46902 * 110.99896 * 52.96161 * 8 3 2
19 19 C 1.52998 * 117.50070 * 242.93397 * 18 8 3
20 20 C 1.52994 * 117.49631 * 174.27091 * 18 8 3
21 21 H 1.08997 * 109.47404 * 65.83177 * 1 2 3
22 22 H 1.09001 * 109.47378 * 185.83506 * 1 2 3
23 23 H 1.09008 * 109.46978 * 305.83393 * 1 2 3
24 24 H 1.08995 * 109.46647 * 239.99608 * 2 1 3
25 25 H 1.09004 * 109.47071 * 119.99652 * 2 1 3
26 26 H 1.08997 * 109.47600 * 295.00269 * 5 3 2
27 27 H 1.09007 * 109.47225 * 55.00335 * 5 3 2
28 28 H 1.09002 * 109.47224 * 49.14512 * 9 8 3
29 29 H 1.08995 * 109.47050 * 169.15086 * 9 8 3
30 30 H 0.97003 * 119.99961 * 179.97438 * 13 12 10
31 31 H 1.09006 * 115.54869 * 28.60724 * 18 8 3
32 32 H 1.08998 * 117.49564 * 359.97438 * 19 18 8
33 33 H 1.08994 * 117.49939 * 145.01944 * 19 18 8
34 34 H 1.09001 * 117.49920 * 214.98296 * 20 18 8
35 35 H 1.08996 * 117.49832 * 0.02562 * 20 18 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6006 1.9833 0.8382
5 6 1.6429 2.1238 -1.3111
6 6 2.0275 3.5438 -1.2624
7 7 2.3244 4.6397 -1.2247
8 7 3.5034 1.4445 0.1291
9 6 3.9131 1.0389 1.4803
10 6 3.5692 2.1322 2.4588
11 1 3.0256 3.0039 2.1256
12 6 3.9485 2.0196 3.7796
13 7 4.6109 0.9584 4.1854
14 14 3.5229 3.3752 4.9924
15 1 2.2006 3.0927 5.6065
16 1 4.5596 3.4329 6.0541
17 1 3.4701 4.6775 4.2807
18 6 4.1229 0.5855 -0.8889
19 6 4.9144 -0.6297 -0.4013
20 6 5.6503 0.5830 -0.9766
21 1 -0.3634 0.4207 -0.9375
22 1 -0.3634 -1.0223 0.1045
23 1 -0.3633 0.6017 0.8332
24 1 1.8932 -0.5139 -0.8899
25 1 1.8933 -0.5138 0.8901
26 1 2.1532 1.6375 -2.1424
27 1 0.5646 2.0440 -1.4500
28 1 3.3905 0.1240 1.7593
29 1 4.9886 0.8623 1.4961
30 1 4.8781 0.8794 5.1145
31 1 3.5651 0.4824 -1.8197
32 1 4.9758 -0.7915 0.6748
33 1 4.8776 -1.5321 -1.0115
34 1 6.0974 0.4779 -1.9651
35 1 6.1955 1.2184 -0.2788
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000042531106.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:35
Heat of formation + Delta-G solvation = 30.702799 kcal
Electronic energy + Delta-G solvation = -15622.164246 eV
Core-core repulsion = 13234.268032 eV
Total energy + Delta-G solvation = -2387.896214 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 222.143 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.38626 -37.54111 -36.13235 -35.03485 -32.62431 -30.91673 -28.48916 -25.30878
-24.55245 -23.14096 -22.34876 -20.02664 -18.82345 -18.04688 -17.27345 -16.71001
-16.14280 -15.39720 -15.08541 -14.79177 -14.60132 -14.34045 -13.76716 -13.48067
-13.35182 -13.12273 -12.94120 -12.71343 -12.67019 -12.45222 -12.28120 -12.13942
-11.93160 -11.69351 -11.46783 -11.23788 -11.01546 -10.94082 -10.58649 -8.67617
-8.20606 -6.28491 1.33924 1.35874 1.46663 2.01365 2.06763 2.36558
2.98797 3.11548 3.29502 3.49172 4.00928 4.15867 4.20834 4.26769
4.37530 4.48591 4.59253 4.66861 4.80167 4.89434 4.98537 5.01413
5.17739 5.21944 5.24397 5.36090 5.41715 5.42335 5.53465 5.63230
5.67011 6.10917 6.45672 6.74601 6.86979 6.89202 7.40058 8.88692
Molecular weight = 222.14amu
Principal moments of inertia in cm(-1)
A = 0.019540 B = 0.010458 C = 0.009243
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1432.590754 B = 2676.717911 C = 3028.683943
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.139 4.139
3 C 0.091 3.909
4 H 0.063 0.937
5 C -0.015 4.015
6 C 0.245 3.755
7 N -0.514 5.514
8 N -0.520 5.520
9 C 0.214 3.786
10 C -0.519 4.519
11 H 0.048 0.952
12 C 0.008 3.992
13 N -0.928 5.928
14 Si 0.953 3.047
15 H -0.268 1.268
16 H -0.281 1.281
17 H -0.278 1.278
18 C 0.025 3.975
19 C -0.217 4.217
20 C -0.182 4.182
21 H 0.087 0.913
22 H 0.058 0.942
23 H 0.041 0.959
24 H 0.088 0.912
25 H 0.035 0.965
26 H 0.137 0.863
27 H 0.152 0.848
28 H -0.018 1.018
29 H 0.005 0.995
30 H 0.263 0.737
31 H 0.152 0.848
32 H 0.065 0.935
33 H 0.116 0.884
34 H 0.121 0.879
35 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.538 -5.538 -12.468 15.587
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.178 4.178
3 C -0.018 4.018
4 H 0.082 0.918
5 C -0.055 4.055
6 C -0.071 4.071
7 N -0.192 5.192
8 N -0.241 5.241
9 C 0.089 3.911
10 C -0.557 4.557
11 H 0.066 0.934
12 C -0.190 4.190
13 N -0.569 5.569
14 Si 0.778 3.222
15 H -0.194 1.194
16 H -0.206 1.206
17 H -0.203 1.203
18 C -0.084 4.084
19 C -0.256 4.256
20 C -0.220 4.220
21 H 0.106 0.894
22 H 0.078 0.922
23 H 0.061 0.939
24 H 0.106 0.894
25 H 0.054 0.946
26 H 0.154 0.846
27 H 0.169 0.831
28 H 0.000 1.000
29 H 0.023 0.977
30 H 0.072 0.928
31 H 0.170 0.830
32 H 0.084 0.916
33 H 0.134 0.866
34 H 0.139 0.861
35 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -6.857 -3.453 -12.321 14.517
hybrid contribution 0.141 -0.469 1.643 1.715
sum -6.716 -3.922 -10.677 13.209
Atomic orbital electron populations
1.21794 0.93749 1.02104 1.02823 1.22037 0.97771 0.95817 1.02184
1.21670 0.87414 0.96039 0.96723 0.91839 1.19843 1.05393 0.80582
0.99654 1.29666 0.91079 0.95344 0.90995 1.81127 1.11432 1.15829
1.10854 1.62054 1.07713 1.50330 1.03971 1.19340 0.94223 0.93328
0.84259 1.21456 1.35274 1.05282 0.93706 0.93385 1.25696 0.95268
0.97872 1.00154 1.70048 1.40149 1.29654 1.17045 0.85636 0.78335
0.79499 0.78691 1.19361 1.20636 1.20314 1.22862 0.93011 0.94735
0.97776 1.23462 1.07537 0.93929 1.00678 1.23032 0.95609 1.00992
1.02393 0.89402 0.92249 0.93936 0.89351 0.94595 0.84575 0.83081
1.00000 0.97666 0.92815 0.83045 0.91643 0.86626 0.86100 0.92459
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.83 9.53 71.98 0.69 -2.14 16
2 C -0.14 -3.57 4.83 30.59 0.15 -3.42 16
3 C 0.09 2.83 1.62 44.91 0.07 2.90 16
4 H 0.06 2.43 6.91 -2.39 -0.02 2.41 16
5 C -0.02 -0.32 5.01 28.79 0.14 -0.18 16
6 C 0.25 7.78 15.15 89.44 1.35 9.14 16
7 N -0.51 -20.21 18.54 20.01 0.37 -19.84 16
8 N -0.52 -20.23 4.31 -850.40 -3.66 -23.90 16
9 C 0.21 10.84 3.26 85.56 0.28 11.12 16
10 C -0.52 -29.52 8.50 25.60 0.22 -29.30 16
11 H 0.05 2.79 7.35 -2.91 -0.02 2.77 16
12 C 0.01 0.48 5.46 84.65 0.46 0.95 16
13 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16
14 Si 0.95 45.83 29.54 68.60 2.03 47.85 16
15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16
16 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16
17 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16
18 C 0.03 0.77 4.40 44.91 0.20 0.97 16
19 C -0.22 -6.93 9.54 30.62 0.29 -6.64 16
20 C -0.18 -5.84 9.96 30.62 0.31 -5.54 16
21 H 0.09 1.08 6.76 -2.39 -0.02 1.07 16
22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
23 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16
24 H 0.09 1.78 6.97 -2.39 -0.02 1.77 16
25 H 0.04 1.22 6.38 -2.38 -0.02 1.21 16
26 H 0.14 2.01 6.35 -2.39 -0.02 1.99 16
27 H 0.15 1.92 6.48 -2.38 -0.02 1.91 16
28 H -0.02 -0.94 6.03 -2.39 -0.01 -0.95 16
29 H 0.01 0.30 5.89 -2.39 -0.01 0.28 16
30 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16
31 H 0.15 3.19 5.97 -2.38 -0.01 3.18 16
32 H 0.06 2.68 5.93 -2.39 -0.01 2.66 16
33 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16
34 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16
35 H 0.06 2.28 7.66 -2.39 -0.02 2.26 16
Total: -1.00 -72.12 283.81 4.26 -67.86
By element:
Atomic # 1 Polarization: 4.60 SS G_CDS: 1.08 Total: 5.68 kcal
Atomic # 6 Polarization: -26.31 SS G_CDS: 4.16 Total: -22.15 kcal
Atomic # 7 Polarization: -96.24 SS G_CDS: -3.01 Total: -99.25 kcal
Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal
Total: -72.12 4.26 -67.86 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042531106.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.567 kcal
(2) G-P(sol) polarization free energy of solvation -72.122 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.445 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.864 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.703 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds