Wall clock time and date at job start Mon Mar 30 2020 02:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47228 * 2 1 4 4 C 1.50704 * 109.47181 * 180.02562 * 3 2 1 5 5 N 1.30508 * 125.64829 * 270.17513 * 4 3 2 6 6 C 1.34123 * 109.25341 * 180.28943 * 5 4 3 7 7 C 1.34668 * 108.02423 * 359.72958 * 6 5 4 8 8 N 1.35042 * 125.65211 * 89.99756 * 4 3 2 9 9 C 1.46498 * 126.39643 * 359.97438 * 8 4 3 10 10 H 1.09003 * 109.47372 * 359.70920 * 9 8 4 11 11 C 1.50699 * 109.46754 * 239.71147 * 9 8 4 12 12 H 1.07998 * 120.00272 * 295.36746 * 11 9 8 13 13 C 1.37881 * 119.99995 * 115.37346 * 11 9 8 14 14 N 1.31517 * 119.99976 * 6.02585 * 13 11 9 15 15 Si 1.86802 * 120.00056 * 186.02712 * 13 11 9 16 16 H 1.48500 * 109.46957 * 59.99844 * 15 13 11 17 17 H 1.48498 * 109.47016 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47050 * 299.99706 * 15 13 11 19 19 C 1.52997 * 109.47447 * 119.71263 * 9 8 4 20 20 C 1.53002 * 109.47033 * 185.62537 * 19 9 8 21 21 H 1.09004 * 109.47265 * 60.00051 * 1 2 3 22 22 H 1.09003 * 109.47379 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47080 * 299.99915 * 1 2 3 24 24 H 1.09005 * 109.47080 * 240.00085 * 2 1 3 25 25 H 1.09004 * 109.47294 * 120.00505 * 2 1 3 26 26 H 1.08997 * 109.47623 * 60.00235 * 3 2 1 27 27 H 1.09000 * 109.47669 * 300.00022 * 3 2 1 28 28 H 1.07998 * 125.99288 * 179.72571 * 6 5 4 29 29 H 1.07994 * 126.59697 * 180.02562 * 7 6 5 30 30 H 0.96998 * 120.00236 * 180.02562 * 14 13 11 31 31 H 1.09007 * 109.47064 * 305.62264 * 19 9 8 32 32 H 1.08998 * 109.47481 * 65.62219 * 19 9 8 33 33 H 1.08998 * 109.47158 * 54.50597 * 20 19 9 34 34 H 1.09002 * 109.46737 * 174.49900 * 20 19 9 35 35 H 1.08995 * 109.47074 * 294.49841 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3081 1.4390 1.0596 6 6 5.5946 1.4466 0.6805 7 6 5.6323 1.4490 -0.6657 8 7 4.3336 1.4425 -1.0983 9 6 3.8815 1.4421 -2.4917 10 1 2.7919 1.4365 -2.5202 11 6 4.4086 0.2153 -3.1904 12 1 5.4721 0.0869 -3.3275 13 6 3.5330 -0.7432 -3.6548 14 7 2.2361 -0.5333 -3.5951 15 14 4.1889 -2.3400 -4.3688 16 1 4.9868 -3.0519 -3.3384 17 1 3.0522 -3.1963 -4.7929 18 1 5.0489 -2.0412 -5.5419 19 6 4.4037 2.6950 -3.1978 20 6 3.8178 2.7666 -4.6093 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 6.4504 1.4502 1.3393 29 1 6.5171 1.4544 -1.2850 30 1 1.6201 -1.2078 -3.9215 31 1 4.1056 3.5799 -2.6353 32 1 5.4912 2.6518 -3.2575 33 1 2.7306 2.7115 -4.5546 34 1 4.1108 3.7065 -5.0770 35 1 4.1946 1.9329 -5.2018 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069964050.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:55 Heat of formation + Delta-G solvation = 13.839542 kcal Electronic energy + Delta-G solvation = -15825.716170 eV Core-core repulsion = 13437.088710 eV Total energy + Delta-G solvation = -2388.627460 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.68597 -37.08095 -35.81811 -34.02564 -32.50887 -30.77582 -28.43930 -27.15205 -25.57751 -22.83978 -22.59570 -21.41254 -20.22448 -18.59376 -17.76487 -16.47923 -16.02102 -15.83219 -15.32955 -14.91226 -14.64186 -14.45491 -14.20607 -13.77429 -13.44903 -13.03050 -12.91615 -12.85685 -12.56550 -12.34462 -12.31683 -12.04968 -12.03168 -11.59381 -11.52086 -11.23349 -10.82143 -10.65708 -10.03495 -8.99198 -8.28066 -6.41115 1.34663 1.40336 1.44746 1.54080 2.31031 2.39462 2.43055 3.18111 3.74356 4.09143 4.24661 4.27669 4.30839 4.47011 4.54179 4.62950 4.69784 4.79200 4.84210 4.97669 5.01475 5.03833 5.09778 5.20747 5.25975 5.37413 5.42246 5.51741 5.58269 5.60513 5.82993 6.07472 6.23148 6.66604 6.80443 7.28922 7.45486 8.76336 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.012628 C = 0.010433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.883167 B = 2216.822702 C = 2683.117217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C -0.018 4.018 4 C 0.173 3.827 5 N -0.535 5.535 6 C -0.068 4.068 7 C -0.059 4.059 8 N -0.424 5.424 9 C 0.228 3.772 10 H 0.080 0.920 11 C -0.535 4.535 12 H 0.051 0.949 13 C 0.046 3.954 14 N -0.887 5.887 15 Si 0.945 3.055 16 H -0.283 1.283 17 H -0.280 1.280 18 H -0.266 1.266 19 C -0.111 4.111 20 C -0.118 4.118 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.182 0.818 29 H 0.172 0.828 30 H 0.270 0.730 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.514 3.150 1.332 3.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C -0.057 4.057 4 C -0.089 4.089 5 N -0.256 5.256 6 C -0.217 4.217 7 C -0.196 4.196 8 N -0.103 5.103 9 C 0.130 3.870 10 H 0.098 0.902 11 C -0.573 4.573 12 H 0.069 0.931 13 C -0.159 4.159 14 N -0.523 5.523 15 Si 0.771 3.229 16 H -0.209 1.209 17 H -0.205 1.205 18 H -0.191 1.191 19 C -0.150 4.150 20 C -0.176 4.176 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.113 0.887 27 H 0.088 0.912 28 H 0.200 0.800 29 H 0.189 0.811 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.066 3.079 1.887 3.765 hybrid contribution 0.889 -1.094 -1.227 1.869 sum -0.178 1.985 0.660 2.099 Atomic orbital electron populations 1.21620 0.93487 1.01937 1.02093 1.21366 0.97364 0.95353 1.00944 1.19888 0.84395 0.98486 1.02917 1.23526 0.96274 1.06742 0.82364 1.70041 1.02907 1.22987 1.29649 1.22504 0.94901 1.10996 0.93254 1.22799 0.88763 1.11688 0.96382 1.46961 1.05801 1.48073 1.09418 1.19631 0.98106 0.94547 0.74736 0.90154 1.21139 0.93199 1.05278 1.37702 0.93101 1.25531 0.95118 1.00284 0.94991 1.69889 1.01906 1.35459 1.45013 0.85819 0.78224 0.80082 0.78819 1.20937 1.20468 1.19111 1.21710 1.00108 0.95967 0.97174 1.21391 0.99973 1.00890 0.95355 0.92902 0.92498 0.91126 0.93506 0.93258 0.88690 0.91211 0.80044 0.81096 0.92031 0.94000 0.92915 0.94046 0.91644 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.91 71.98 0.71 -3.35 16 2 C -0.11 -4.27 5.92 30.59 0.18 -4.08 16 3 C -0.02 -0.69 5.36 29.85 0.16 -0.53 16 4 C 0.17 7.74 7.16 138.13 0.99 8.73 16 5 N -0.54 -23.99 11.25 -188.13 -2.12 -26.11 16 6 C -0.07 -2.75 11.87 83.52 0.99 -1.76 16 7 C -0.06 -2.47 10.84 83.09 0.90 -1.57 16 8 N -0.42 -19.26 2.60 -495.79 -1.29 -20.55 16 9 C 0.23 10.52 2.70 44.24 0.12 10.64 16 10 H 0.08 4.04 5.45 -2.39 -0.01 4.02 16 11 C -0.53 -26.70 7.40 25.60 0.19 -26.51 16 12 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 13 C 0.05 2.28 5.45 84.66 0.46 2.74 16 14 N -0.89 -45.06 12.52 21.45 0.27 -44.79 16 15 Si 0.94 40.81 29.54 68.60 2.03 42.84 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 19 C -0.11 -4.41 5.39 30.59 0.16 -4.24 16 20 C -0.12 -4.35 9.64 71.98 0.69 -3.65 16 21 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.05 2.15 8.04 -2.38 -0.02 2.13 16 25 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 27 H 0.07 2.71 7.08 -2.39 -0.02 2.69 16 28 H 0.18 6.01 8.06 -2.91 -0.02 5.99 16 29 H 0.17 6.37 8.06 -2.91 -0.02 6.35 16 30 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 31 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.05 2.04 8.10 -2.39 -0.02 2.02 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.92 7.58 -2.39 -0.02 1.90 16 Total: -1.00 -55.90 292.51 5.49 -50.41 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 1.04 Total: 21.79 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 5.56 Total: -23.59 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -3.14 Total: -91.45 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -55.90 5.49 -50.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069964050.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.249 kcal (2) G-P(sol) polarization free energy of solvation -55.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds