Wall clock time and date at job start Mon Mar 30 2020 02:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47623 * 2 1 4 4 C 1.50703 * 109.47412 * 179.97438 * 3 2 1 5 5 N 1.30495 * 125.65195 * 269.95324 * 4 3 2 6 6 C 1.34121 * 109.25847 * 180.02562 * 5 4 3 7 7 C 1.34667 * 108.02190 * 359.73158 * 6 5 4 8 8 N 1.35042 * 125.64598 * 90.00211 * 4 3 2 9 9 C 1.46500 * 126.40200 * 359.96091 * 8 4 3 10 10 H 1.08998 * 109.47324 * 359.97438 * 9 8 4 11 11 C 1.50692 * 109.47005 * 120.00393 * 9 8 4 12 12 H 1.07994 * 120.00460 * 26.64658 * 11 9 8 13 13 C 1.37882 * 119.99937 * 206.64037 * 11 9 8 14 14 N 1.31516 * 119.99874 * 353.48930 * 13 11 9 15 15 Si 1.86800 * 120.00059 * 173.49284 * 13 11 9 16 16 H 1.48499 * 109.46736 * 180.02562 * 15 13 11 17 17 H 1.48502 * 109.47001 * 299.99756 * 15 13 11 18 18 H 1.48493 * 109.47370 * 59.99812 * 15 13 11 19 19 C 1.53007 * 109.46975 * 240.00616 * 9 8 4 20 20 C 1.52995 * 109.47252 * 65.54696 * 19 9 8 21 21 H 1.09000 * 109.47462 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47166 * 300.00792 * 1 2 3 23 23 H 1.09006 * 109.46802 * 60.00235 * 1 2 3 24 24 H 1.09000 * 109.47425 * 239.99043 * 2 1 3 25 25 H 1.09006 * 109.46802 * 119.99765 * 2 1 3 26 26 H 1.09004 * 109.47088 * 59.99369 * 3 2 1 27 27 H 1.09006 * 109.46840 * 299.99741 * 3 2 1 28 28 H 1.08000 * 125.98846 * 179.97438 * 6 5 4 29 29 H 1.07994 * 126.59781 * 180.27987 * 7 6 5 30 30 H 0.97001 * 119.99903 * 354.24978 * 14 13 11 31 31 H 1.09006 * 109.46829 * 185.54703 * 19 9 8 32 32 H 1.08999 * 109.46972 * 305.54453 * 19 9 8 33 33 H 1.08999 * 109.47177 * 180.02562 * 20 19 9 34 34 H 1.09006 * 109.47209 * 299.99774 * 20 19 9 35 35 H 1.08999 * 109.47331 * 59.99976 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 0.0006 5 7 4.3073 1.4433 1.0613 6 6 5.5941 1.4435 0.6833 7 6 5.6330 1.4366 -0.6628 8 7 4.3346 1.4422 -1.0964 9 6 3.8836 1.4412 -2.4903 10 1 2.7940 1.4402 -2.5197 11 6 4.4043 2.6715 -3.1875 12 1 5.3117 3.1446 -2.8423 13 6 3.7224 3.1931 -4.2664 14 7 2.6917 2.5478 -4.7673 15 14 4.2625 4.8163 -5.0167 16 1 3.3719 5.1559 -6.1554 17 1 4.1831 5.8868 -3.9905 18 1 5.6615 4.6970 -5.5002 19 6 4.4134 0.1918 -3.1969 20 6 3.7764 -1.0535 -2.5769 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8898 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5140 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6767 1.9563 0.8900 27 1 1.6768 1.9562 -0.8901 28 1 6.4493 1.4446 1.3429 29 1 6.5182 1.4306 -1.2813 30 1 2.4621 1.6667 -4.4330 31 1 4.1619 0.2394 -4.2564 32 1 5.4962 0.1413 -3.0824 33 1 4.1542 -1.9436 -3.0800 34 1 4.0280 -1.1011 -1.5173 35 1 2.6936 -1.0030 -2.6914 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069964053.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:57 Heat of formation + Delta-G solvation = 10.361356 kcal Electronic energy + Delta-G solvation = -15824.803770 eV Core-core repulsion = 13436.025485 eV Total energy + Delta-G solvation = -2388.778285 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.92639 -37.49471 -35.98111 -34.18695 -32.47013 -30.92020 -28.56819 -27.26808 -25.34520 -23.31312 -22.69437 -21.56137 -20.52071 -19.21253 -17.77195 -16.29896 -16.13510 -15.73072 -15.41107 -15.22041 -14.75152 -14.71275 -14.31078 -14.07283 -13.81992 -13.22695 -12.98863 -12.78172 -12.61476 -12.54308 -12.22504 -12.11182 -11.98965 -11.89902 -11.58515 -11.17750 -10.84950 -10.69308 -10.12251 -9.13907 -8.76804 -6.54824 1.34097 1.51167 1.54854 1.75955 2.21605 2.26655 2.47532 3.04956 3.56162 3.90707 4.02852 4.12570 4.17027 4.18135 4.32099 4.41718 4.54412 4.58555 4.68431 4.72996 4.87773 4.92431 4.95801 4.97722 5.09261 5.15779 5.23234 5.28875 5.40464 5.56212 5.84308 5.95436 6.03814 6.37312 6.58470 7.21693 7.29489 8.60671 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.023145 B = 0.010383 C = 0.009224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.463615 B = 2696.197061 C = 3034.742432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.030 4.030 4 C 0.179 3.821 5 N -0.526 5.526 6 C -0.057 4.057 7 C -0.059 4.059 8 N -0.420 5.420 9 C 0.246 3.754 10 H 0.044 0.956 11 C -0.623 4.623 12 H 0.047 0.953 13 C -0.008 4.008 14 N -0.917 5.917 15 Si 1.108 2.892 16 H -0.279 1.279 17 H -0.280 1.280 18 H -0.269 1.269 19 C -0.116 4.116 20 C -0.141 4.141 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.188 0.812 29 H 0.171 0.829 30 H 0.265 0.735 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.324 -4.610 5.076 6.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.069 4.069 4 C -0.083 4.083 5 N -0.246 5.246 6 C -0.206 4.206 7 C -0.195 4.195 8 N -0.099 5.099 9 C 0.145 3.855 10 H 0.062 0.938 11 C -0.661 4.661 12 H 0.065 0.935 13 C -0.210 4.210 14 N -0.552 5.552 15 Si 0.930 3.070 16 H -0.204 1.204 17 H -0.205 1.205 18 H -0.194 1.194 19 C -0.155 4.155 20 C -0.198 4.198 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.205 0.795 29 H 0.188 0.812 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.072 -3.503 4.553 5.844 hybrid contribution 0.977 -1.004 0.160 1.410 sum -0.095 -4.507 4.714 6.522 Atomic orbital electron populations 1.21726 0.93427 1.02735 1.02283 1.21502 0.97427 0.94228 1.01999 1.20026 0.84339 0.99442 1.03077 1.23506 0.96208 1.06606 0.81969 1.70088 1.02852 1.22567 1.29093 1.22541 0.94995 1.10087 0.92955 1.22794 0.88324 1.11809 0.96575 1.45963 1.06178 1.49348 1.08367 1.19285 0.95560 0.95263 0.75406 0.93772 1.22288 1.13049 1.13505 1.17277 0.93466 1.27037 0.93107 1.06174 0.94692 1.70920 1.26916 1.14644 1.42707 0.83018 0.76393 0.71583 0.75965 1.20376 1.20535 1.19433 1.21848 0.99942 0.94188 0.99557 1.21792 1.00447 0.97601 0.99982 0.91065 0.91412 0.93101 0.92853 0.91594 0.88595 0.92062 0.79503 0.81207 0.92448 0.92485 0.92796 0.91249 0.93968 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.91 71.98 0.71 -2.74 16 2 C -0.11 -3.40 5.92 30.59 0.18 -3.22 16 3 C -0.03 -1.07 5.36 29.85 0.16 -0.91 16 4 C 0.18 7.55 7.16 138.13 0.99 8.54 16 5 N -0.53 -22.14 11.25 -188.14 -2.12 -24.26 16 6 C -0.06 -2.20 11.87 83.52 0.99 -1.21 16 7 C -0.06 -2.39 10.46 83.08 0.87 -1.52 16 8 N -0.42 -18.44 2.07 -495.80 -1.03 -19.47 16 9 C 0.25 11.51 1.90 44.25 0.08 11.59 16 10 H 0.04 2.22 5.61 -2.39 -0.01 2.21 16 11 C -0.62 -32.74 8.38 25.60 0.21 -32.53 16 12 H 0.05 2.55 7.60 -2.91 -0.02 2.53 16 13 C -0.01 -0.44 5.45 84.66 0.46 0.03 16 14 N -0.92 -50.75 13.55 21.45 0.29 -50.46 16 15 Si 1.11 47.55 29.91 68.60 2.05 49.60 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 19 C -0.12 -4.86 5.23 30.59 0.16 -4.70 16 20 C -0.14 -4.90 8.99 71.98 0.65 -4.25 16 21 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 24 H 0.05 1.71 6.02 -2.39 -0.01 1.70 16 25 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 27 H 0.06 2.38 7.08 -2.38 -0.02 2.36 16 28 H 0.19 5.76 8.06 -2.91 -0.02 5.74 16 29 H 0.17 6.31 8.06 -2.91 -0.02 6.28 16 30 H 0.27 14.51 6.31 -92.71 -0.59 13.92 16 31 H 0.06 2.55 7.63 -2.38 -0.02 2.53 16 32 H 0.05 2.21 7.78 -2.39 -0.02 2.19 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.04 1.51 7.63 -2.38 -0.02 1.49 16 35 H 0.05 1.80 7.13 -2.39 -0.02 1.78 16 Total: -1.00 -59.67 286.49 5.90 -53.76 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 1.23 Total: 21.74 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 5.47 Total: -30.91 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -2.85 Total: -94.19 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.05 Total: 49.60 kcal Total: -59.67 5.90 -53.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069964053.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.126 kcal (2) G-P(sol) polarization free energy of solvation -59.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds