Wall clock time and date at job start Mon Mar 30 2020 02:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46887 * 2 1 4 4 H 1.08995 * 109.46918 * 55.00271 * 3 2 1 5 5 C 1.47202 * 109.46648 * 175.00488 * 3 2 1 6 6 N 3.43546 * 154.82519 * 8.42876 * 2 1 3 7 7 N 1.46496 * 109.47120 * 295.00209 * 3 2 1 8 8 C 1.36937 * 120.00193 * 123.58487 * 7 3 2 9 9 H 1.07991 * 120.00424 * 212.60067 * 8 7 3 10 10 C 1.38820 * 119.99603 * 32.59540 * 8 7 3 11 11 N 1.31622 * 119.99958 * 16.86796 * 10 8 7 12 12 Si 1.86794 * 119.99763 * 196.86217 * 10 8 7 13 13 H 1.48497 * 109.47396 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46874 * 120.00530 * 12 10 8 15 15 H 1.48505 * 109.47274 * 239.99867 * 12 10 8 16 16 C 1.46500 * 120.00112 * 303.58477 * 7 3 2 17 17 C 1.54266 * 110.03141 * 238.27552 * 16 7 3 18 18 C 1.54897 * 104.19572 * 217.10465 * 17 16 7 19 19 C 1.54889 * 102.74638 * 37.94105 * 18 17 16 20 20 C 1.53877 * 110.03428 * 121.10786 * 16 7 3 21 21 H 1.08999 * 109.47483 * 59.99549 * 1 2 3 22 22 H 1.09006 * 109.46670 * 299.99879 * 1 2 3 23 23 H 1.08997 * 109.47087 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47213 * 119.99981 * 2 1 3 25 25 H 1.08996 * 109.46612 * 240.00200 * 2 1 3 26 26 H 0.96992 * 119.99739 * 184.97258 * 11 10 8 27 27 H 1.08996 * 110.01746 * 359.71745 * 16 7 3 28 28 H 1.08994 * 110.48749 * 335.78089 * 17 16 7 29 29 H 1.08998 * 110.48810 * 98.43113 * 17 16 7 30 30 H 1.08996 * 110.75536 * 279.62852 * 18 17 16 31 31 H 1.08998 * 110.91402 * 156.32806 * 18 17 16 32 32 H 1.09000 * 110.48929 * 203.37720 * 19 18 17 33 33 H 1.09004 * 110.48504 * 80.73457 * 19 18 17 34 34 H 1.09002 * 110.03417 * 238.57130 * 20 16 7 35 35 H 1.08999 * 110.02807 * 359.95163 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5071 1.4443 0.1208 6 7 4.6392 1.4456 0.2142 7 7 1.6524 2.0975 -1.2517 8 6 0.9203 3.2544 -1.2211 9 1 0.2083 3.4638 -2.0055 10 6 1.0935 4.1579 -0.1815 11 7 2.1635 4.0860 0.5816 12 14 -0.1920 5.4758 0.1342 13 1 -1.2909 5.3428 -0.8557 14 1 -0.7393 5.3150 1.5053 15 1 0.4319 6.8172 0.0046 16 6 2.0479 1.5149 -2.5364 17 6 2.8808 2.5319 -3.3438 18 6 2.4361 2.3077 -4.8106 19 6 0.9174 2.0382 -4.6699 20 6 0.7996 1.2010 -3.3795 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 2.2503 4.6697 1.3513 27 1 2.6255 0.6053 -2.3715 28 1 2.6519 3.5494 -3.0272 29 1 3.9455 2.3270 -3.2325 30 1 2.9435 1.4440 -5.2403 31 1 2.6163 3.1985 -5.4122 32 1 0.5492 1.4731 -5.5262 33 1 0.3714 2.9760 -4.5673 34 1 0.7717 0.1392 -3.6245 35 1 -0.1005 1.4814 -2.8325 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070715007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:08 Heat of formation + Delta-G solvation = 27.241028 kcal Electronic energy + Delta-G solvation = -16093.138880 eV Core-core repulsion = 13705.092552 eV Total energy + Delta-G solvation = -2388.046328 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.25209 -35.92568 -34.20621 -32.43793 -30.51121 -27.93647 -27.16903 -26.24945 -23.01544 -20.98936 -19.96631 -19.13207 -17.25150 -16.09498 -15.37883 -14.82787 -14.19618 -14.07517 -13.28239 -12.90479 -12.59272 -12.50966 -12.33617 -11.86996 -11.27871 -11.17555 -11.09484 -10.93953 -10.72602 -10.55723 -10.47729 -10.41646 -10.30027 -10.13913 -10.02796 -9.93262 -9.78343 -9.44135 -8.60088 -6.87811 -5.91309 -3.44124 3.32211 3.42200 3.43278 3.94535 4.10765 4.44584 5.19743 5.21212 5.29285 5.39808 5.42612 5.62195 5.85635 5.91382 6.07658 6.16824 6.24706 6.26103 6.37410 6.44974 6.50810 6.52377 6.55109 6.64671 6.70025 6.78118 6.90911 6.98816 7.14102 7.19160 7.29661 7.75603 8.33822 8.87584 9.05104 9.66859 10.20250 11.14594 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.014200 C = 0.011297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.618849 B = 1971.398074 C = 2477.959394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.275 3.725 4 H 0.129 0.871 5 C 0.243 3.757 6 N -0.500 5.500 7 N -0.564 5.564 8 C -0.252 4.252 9 H 0.075 0.925 10 C 0.009 3.991 11 N -0.896 5.896 12 Si 0.898 3.102 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.291 1.291 16 C 0.167 3.833 17 C -0.132 4.132 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.132 4.132 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.256 0.744 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.007 -6.056 -5.014 9.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.172 4.172 3 C 0.163 3.837 4 H 0.146 0.854 5 C -0.076 4.076 6 N -0.179 5.179 7 N -0.283 5.283 8 C -0.381 4.381 9 H 0.093 0.907 10 C -0.191 4.191 11 N -0.539 5.539 12 Si 0.728 3.272 13 H -0.200 1.200 14 H -0.215 1.215 15 H -0.218 1.218 16 C 0.060 3.940 17 C -0.171 4.171 18 C -0.162 4.162 19 C -0.156 4.156 20 C -0.171 4.171 21 H 0.089 0.911 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.255 -5.889 -4.770 8.249 hybrid contribution -0.830 0.946 0.250 1.283 sum -4.085 -4.944 -4.520 7.846 Atomic orbital electron populations 1.21591 0.94848 0.99745 1.03145 1.21999 0.97228 0.97104 1.00909 1.17989 0.80004 0.91959 0.93712 0.85421 1.30699 0.96306 0.89585 0.90982 1.80874 1.14289 1.12130 1.10595 1.44033 1.60767 1.25836 0.97653 1.19098 1.14080 0.94762 1.10195 0.90697 1.25146 0.96194 0.96972 1.00753 1.70062 1.24720 1.40938 1.18146 0.86301 0.81322 0.81661 0.77948 1.20047 1.21479 1.21831 1.21062 0.92463 0.94123 0.86311 1.22777 0.98294 1.02748 0.93284 1.22432 0.96163 0.99888 0.97688 1.22261 0.96217 0.99917 0.97167 1.22585 1.00956 0.97684 0.95855 0.91128 0.93017 0.94285 0.92668 0.92520 0.93351 0.93124 0.89728 0.93774 0.92824 0.92795 0.93282 0.91888 0.93507 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.80 37.16 0.36 -1.72 16 2 C -0.13 -2.23 5.26 -26.73 -0.14 -2.37 16 3 C 0.27 5.80 1.60 -70.72 -0.11 5.69 16 4 H 0.13 2.98 6.16 -51.93 -0.32 2.66 16 5 C 0.24 5.69 13.73 -20.76 -0.28 5.40 16 6 N -0.50 -12.44 18.54 42.15 0.78 -11.66 16 7 N -0.56 -12.17 1.73 -160.06 -0.28 -12.45 16 8 C -0.25 -5.98 7.70 -15.06 -0.12 -6.09 16 9 H 0.08 1.77 7.20 -52.49 -0.38 1.39 16 10 C 0.01 0.23 4.85 -17.43 -0.08 0.14 16 11 N -0.90 -24.08 10.91 55.49 0.61 -23.47 16 12 Si 0.90 20.14 29.59 -169.99 -5.03 15.11 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 14 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 C 0.17 3.22 2.53 -66.81 -0.17 3.05 16 17 C -0.13 -2.59 6.41 -25.07 -0.16 -2.75 16 18 C -0.12 -1.97 6.91 -24.73 -0.17 -2.14 16 19 C -0.12 -1.82 6.83 -25.07 -0.17 -1.99 16 20 C -0.13 -2.18 5.99 -25.61 -0.15 -2.34 16 21 H 0.07 1.17 6.83 -51.93 -0.35 0.81 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.93 6.71 -51.93 -0.35 0.58 16 26 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 27 H 0.05 0.97 6.62 -51.93 -0.34 0.63 16 28 H 0.08 1.92 7.05 -51.93 -0.37 1.55 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.36 6.27 -51.93 -0.33 1.04 16 LS Contribution 282.13 15.07 4.25 4.25 Total: -1.00 -26.89 282.13 -6.25 -33.13 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.38 Total: 0.20 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -1.20 Total: -5.12 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 1.11 Total: -47.58 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.89 -6.25 -33.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.375 kcal (2) G-P(sol) polarization free energy of solvation -26.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds