Wall clock time and date at job start Mon Mar 30 2020 02:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46887 * 2 1 4 4 H 1.08995 * 109.46918 * 55.00271 * 3 2 1 5 5 C 1.47202 * 109.46648 * 175.00488 * 3 2 1 6 6 N 3.43546 * 154.82519 * 8.42876 * 2 1 3 7 7 N 1.46496 * 109.47120 * 295.00209 * 3 2 1 8 8 C 1.36937 * 120.00193 * 123.58487 * 7 3 2 9 9 H 1.07991 * 120.00424 * 212.60067 * 8 7 3 10 10 C 1.38820 * 119.99603 * 32.59540 * 8 7 3 11 11 N 1.31622 * 119.99958 * 16.86796 * 10 8 7 12 12 Si 1.86794 * 119.99763 * 196.86217 * 10 8 7 13 13 H 1.48497 * 109.47396 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46874 * 120.00530 * 12 10 8 15 15 H 1.48505 * 109.47274 * 239.99867 * 12 10 8 16 16 C 1.46500 * 120.00112 * 303.58477 * 7 3 2 17 17 C 1.54266 * 110.03141 * 238.27552 * 16 7 3 18 18 C 1.54897 * 104.19572 * 217.10465 * 17 16 7 19 19 C 1.54889 * 102.74638 * 37.94105 * 18 17 16 20 20 C 1.53877 * 110.03428 * 121.10786 * 16 7 3 21 21 H 1.08999 * 109.47483 * 59.99549 * 1 2 3 22 22 H 1.09006 * 109.46670 * 299.99879 * 1 2 3 23 23 H 1.08997 * 109.47087 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47213 * 119.99981 * 2 1 3 25 25 H 1.08996 * 109.46612 * 240.00200 * 2 1 3 26 26 H 0.96992 * 119.99739 * 184.97258 * 11 10 8 27 27 H 1.08996 * 110.01746 * 359.71745 * 16 7 3 28 28 H 1.08994 * 110.48749 * 335.78089 * 17 16 7 29 29 H 1.08998 * 110.48810 * 98.43113 * 17 16 7 30 30 H 1.08996 * 110.75536 * 279.62852 * 18 17 16 31 31 H 1.08998 * 110.91402 * 156.32806 * 18 17 16 32 32 H 1.09000 * 110.48929 * 203.37720 * 19 18 17 33 33 H 1.09004 * 110.48504 * 80.73457 * 19 18 17 34 34 H 1.09002 * 110.03417 * 238.57130 * 20 16 7 35 35 H 1.08999 * 110.02807 * 359.95163 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5071 1.4443 0.1208 6 7 4.6392 1.4456 0.2142 7 7 1.6524 2.0975 -1.2517 8 6 0.9203 3.2544 -1.2211 9 1 0.2083 3.4638 -2.0055 10 6 1.0935 4.1579 -0.1815 11 7 2.1635 4.0860 0.5816 12 14 -0.1920 5.4758 0.1342 13 1 -1.2909 5.3428 -0.8557 14 1 -0.7393 5.3150 1.5053 15 1 0.4319 6.8172 0.0046 16 6 2.0479 1.5149 -2.5364 17 6 2.8808 2.5319 -3.3438 18 6 2.4361 2.3077 -4.8106 19 6 0.9174 2.0382 -4.6699 20 6 0.7996 1.2010 -3.3795 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 2.2503 4.6697 1.3513 27 1 2.6255 0.6053 -2.3715 28 1 2.6519 3.5494 -3.0272 29 1 3.9455 2.3270 -3.2325 30 1 2.9435 1.4440 -5.2403 31 1 2.6163 3.1985 -5.4122 32 1 0.5492 1.4731 -5.5262 33 1 0.3714 2.9760 -4.5673 34 1 0.7717 0.1392 -3.6245 35 1 -0.1005 1.4814 -2.8325 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070715007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:08 Heat of formation + Delta-G solvation = 14.096580 kcal Electronic energy + Delta-G solvation = -16093.708866 eV Core-core repulsion = 13705.092552 eV Total energy + Delta-G solvation = -2388.616314 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.82504 -37.54914 -35.98793 -34.12297 -32.14077 -29.34917 -28.64907 -27.94817 -24.71616 -22.43111 -21.30827 -20.73052 -19.04161 -17.74972 -16.96652 -16.52086 -15.83975 -15.53946 -14.80077 -14.51652 -14.13426 -14.04042 -13.96973 -13.64221 -13.02613 -12.82607 -12.69873 -12.66944 -12.26955 -12.08694 -11.96427 -11.81478 -11.75949 -11.72607 -11.53080 -11.38690 -11.28483 -11.00442 -10.48468 -8.68672 -7.82353 -5.35140 1.51457 1.57336 1.64479 2.09115 2.25076 2.59764 3.34683 3.54114 3.64181 4.00173 4.04172 4.28906 4.50291 4.51874 4.69795 4.79615 4.83132 4.95872 5.00387 5.04405 5.12298 5.19576 5.22099 5.29534 5.32835 5.37668 5.55016 5.58468 5.64934 5.70232 5.82239 5.84287 6.48071 7.01744 7.18425 7.85782 8.35401 9.21750 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.014200 C = 0.011297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.618849 B = 1971.398074 C = 2477.959394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.122 4.122 3 C 0.273 3.727 4 H 0.106 0.894 5 C 0.251 3.749 6 N -0.534 5.534 7 N -0.570 5.570 8 C -0.233 4.233 9 H 0.078 0.922 10 C -0.040 4.040 11 N -0.932 5.932 12 Si 0.952 3.048 13 H -0.262 1.262 14 H -0.292 1.292 15 H -0.308 1.308 16 C 0.161 3.839 17 C -0.134 4.134 18 C -0.114 4.114 19 C -0.114 4.114 20 C -0.123 4.123 21 H 0.058 0.942 22 H 0.045 0.955 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.247 0.753 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.539 -7.643 -6.565 12.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.162 4.162 3 C 0.161 3.839 4 H 0.123 0.877 5 C -0.068 4.068 6 N -0.213 5.213 7 N -0.290 5.290 8 C -0.363 4.363 9 H 0.096 0.904 10 C -0.236 4.236 11 N -0.578 5.578 12 Si 0.781 3.219 13 H -0.186 1.186 14 H -0.218 1.218 15 H -0.236 1.236 16 C 0.055 3.945 17 C -0.173 4.173 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.162 4.162 21 H 0.078 0.922 22 H 0.064 0.936 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.815 -7.496 -6.351 10.941 hybrid contribution -0.308 1.422 0.684 1.608 sum -5.123 -6.074 -5.667 9.759 Atomic orbital electron populations 1.21539 0.93359 1.01479 1.02283 1.21921 0.98317 0.93825 1.02125 1.18218 0.78456 0.94421 0.92764 0.87674 1.31364 0.96880 0.88513 0.90005 1.80857 1.15392 1.13430 1.11666 1.44208 1.60507 1.25542 0.98735 1.19295 1.13075 0.94761 1.09161 0.90408 1.25687 0.97580 0.98864 1.01428 1.70196 1.26541 1.42218 1.18798 0.85450 0.79783 0.78856 0.77767 1.18625 1.21835 1.23630 1.21277 0.93947 0.93751 0.85526 1.22715 0.97483 1.00601 0.96519 1.22392 0.96733 1.01183 0.94889 1.22250 0.95486 0.99686 0.97698 1.22476 0.98570 0.99496 0.95609 0.92248 0.93626 0.91207 0.91142 0.91548 0.94400 0.92842 0.93481 0.95476 0.90780 0.92007 0.90155 0.92975 0.90906 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 9.80 71.98 0.71 -2.92 16 2 C -0.12 -3.86 5.26 30.60 0.16 -3.70 16 3 C 0.27 11.45 1.60 43.19 0.07 11.52 16 4 H 0.11 4.99 6.16 -2.39 -0.01 4.97 16 5 C 0.25 11.82 13.73 89.44 1.23 13.05 16 6 N -0.53 -26.93 18.54 20.01 0.37 -26.56 16 7 N -0.57 -24.36 1.73 -660.32 -1.14 -25.50 16 8 C -0.23 -10.99 7.70 84.04 0.65 -10.34 16 9 H 0.08 3.61 7.20 -2.92 -0.02 3.59 16 10 C -0.04 -2.01 4.85 84.86 0.41 -1.60 16 11 N -0.93 -51.48 10.91 21.65 0.24 -51.24 16 12 Si 0.95 41.90 29.59 68.60 2.03 43.93 16 13 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 14 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 15 H -0.31 -14.33 7.11 99.48 0.71 -13.62 16 16 C 0.16 5.97 2.53 45.72 0.12 6.09 16 17 C -0.13 -5.19 6.41 31.67 0.20 -4.99 16 18 C -0.11 -3.34 6.91 31.89 0.22 -3.12 16 19 C -0.11 -3.12 6.83 31.67 0.22 -2.90 16 20 C -0.12 -3.68 5.99 31.32 0.19 -3.50 16 21 H 0.06 1.81 6.83 -2.39 -0.02 1.79 16 22 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 23 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.07 1.99 6.71 -2.39 -0.02 1.97 16 26 H 0.25 13.61 8.32 -92.71 -0.77 12.84 16 27 H 0.05 1.95 6.62 -2.39 -0.02 1.93 16 28 H 0.05 2.16 7.05 -2.39 -0.02 2.15 16 29 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 2.18 6.27 -2.39 -0.01 2.17 16 Total: -1.00 -58.43 282.13 6.72 -51.71 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.06 Total: 10.09 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 4.17 Total: -2.42 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -0.54 Total: -103.31 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -58.43 6.72 -51.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.807 kcal (2) G-P(sol) polarization free energy of solvation -58.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds