Wall clock time and date at job start Mon Mar 30 2020 03:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.37423 * 299.08239 * 9 7 2 11 11 C 1.53747 * 110.42114 * 61.45329 * 9 7 2 12 12 N 1.46527 * 105.18735 * 118.76984 * 11 9 7 13 13 C 1.39658 * 110.07924 * 359.97438 * 12 11 9 14 14 C 1.39662 * 129.31157 * 179.97438 * 13 12 11 15 15 C 1.37831 * 120.29444 * 179.97438 * 14 13 12 16 16 C 1.38393 * 120.22138 * 0.07486 * 15 14 13 17 17 Cl 1.73602 * 120.09594 * 179.97438 * 16 15 14 18 18 C 1.38324 * 119.80342 * 359.96720 * 16 15 14 19 19 C 1.38175 * 120.14225 * 359.97438 * 18 16 15 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.08996 * 110.30091 * 237.69906 * 11 9 7 22 22 H 1.09002 * 110.29795 * 359.73987 * 11 9 7 23 23 H 0.97003 * 124.96621 * 180.02562 * 12 11 9 24 24 H 1.08004 * 119.85192 * 0.02562 * 14 13 12 25 25 H 1.08001 * 119.88815 * 180.02562 * 15 14 13 26 26 H 1.08001 * 119.92822 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6314 -2.5797 0.8927 11 6 0.3859 -2.6192 -1.2659 12 7 0.8921 -3.8026 -1.9661 13 6 1.9458 -4.3710 -1.2471 14 6 2.7125 -5.4999 -1.5444 15 6 3.7201 -5.8999 -0.6933 16 6 3.9788 -5.1863 0.4639 17 17 5.2482 -5.6935 1.5340 18 6 3.2229 -4.0678 0.7653 19 6 2.2127 -3.6630 -0.0861 20 1 -0.4850 0.8401 0.0004 21 1 -0.6611 -2.7582 -0.9965 22 1 0.5009 -1.7316 -1.8882 23 1 0.5464 -4.1414 -2.8068 24 1 2.5155 -6.0613 -2.4458 25 1 4.3092 -6.7736 -0.9299 26 1 3.4233 -3.5092 1.6677 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071487025.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:47 Heat of formation + Delta-G solvation = 17.331680 kcal Electronic energy + Delta-G solvation = -12736.748853 eV Core-core repulsion = 10419.597137 eV Total energy + Delta-G solvation = -2317.151716 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.046 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.53285 -36.41189 -35.03103 -32.99822 -30.96247 -28.31837 -28.05672 -24.55483 -22.28350 -20.99991 -20.11171 -16.95232 -16.26420 -15.46043 -15.08418 -14.50316 -13.89733 -13.52961 -13.00603 -12.59451 -12.23479 -11.77219 -11.54793 -11.21299 -11.01180 -10.88862 -10.77995 -10.54397 -10.36023 -9.54246 -9.48520 -9.04559 -8.56579 -8.12556 -6.56200 -6.12879 -4.20106 2.02867 2.06017 2.78032 3.27579 3.31848 3.35784 4.21730 4.31053 4.47517 5.16375 5.38782 5.54148 5.97186 6.02104 6.12810 6.30766 6.58266 6.61222 6.76666 6.91977 7.16263 7.23214 7.35962 7.61147 7.80525 7.88329 8.22128 8.56977 8.83127 9.45149 10.92914 Molecular weight = 223.05amu Principal moments of inertia in cm(-1) A = 0.030701 B = 0.009023 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.794933 B = 3102.299470 C = 3788.976358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.061 0.939 9 C 0.079 3.921 10 H 0.049 0.951 11 C 0.136 3.864 12 N -0.746 5.746 13 C 0.199 3.801 14 C -0.190 4.190 15 C -0.081 4.081 16 C -0.096 4.096 17 Cl -0.101 7.101 18 C -0.056 4.056 19 C -0.116 4.116 20 H 0.264 0.736 21 H 0.045 0.955 22 H 0.072 0.928 23 H 0.398 0.602 24 H 0.114 0.886 25 H 0.121 0.879 26 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.578 -8.372 -1.805 9.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.212 1.212 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.079 0.921 9 C 0.061 3.939 10 H 0.067 0.933 11 C 0.013 3.987 12 N -0.375 5.375 13 C 0.093 3.907 14 C -0.214 4.214 15 C -0.101 4.101 16 C -0.124 4.124 17 Cl -0.072 7.072 18 C -0.076 4.076 19 C -0.120 4.120 20 H 0.074 0.926 21 H 0.064 0.936 22 H 0.090 0.910 23 H 0.233 0.767 24 H 0.132 0.868 25 H 0.138 0.862 26 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.378 -8.123 -1.716 8.963 hybrid contribution 0.367 0.766 -0.367 0.925 sum 3.745 -7.358 -2.083 8.514 Atomic orbital electron populations 1.69931 1.05888 1.27163 1.50024 1.24989 0.94947 0.99262 0.94736 0.86570 0.79563 0.82591 0.78865 1.21227 1.20019 1.20194 1.21009 0.93128 0.89138 1.51367 0.92063 1.18325 0.90990 0.90534 0.94087 0.93289 1.22127 0.96538 0.85144 0.94920 1.45227 1.35690 1.31460 1.25083 1.18581 0.88459 0.91923 0.91767 1.20067 1.00141 0.99089 1.02084 1.20349 0.97582 0.99188 0.92934 1.20331 0.96561 1.00408 0.95113 1.98289 1.52037 1.91047 1.65863 1.20156 0.93597 0.94161 0.99637 1.20508 0.98745 0.98577 0.94211 0.92626 0.93637 0.91018 0.76656 0.86751 0.86153 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.19 12.34 55.43 0.68 -23.50 15 2 C 0.06 1.66 5.09 -17.82 -0.09 1.57 15 3 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 15 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.51 -13.49 8.44 -34.44 -0.29 -13.78 15 8 H 0.06 1.65 7.76 -52.49 -0.41 1.24 15 9 C 0.08 1.93 2.97 -92.28 -0.27 1.66 15 10 H 0.05 1.28 8.14 -51.93 -0.42 0.86 15 11 C 0.14 3.04 6.73 -3.64 -0.02 3.02 15 12 N -0.75 -14.15 6.53 -58.11 -0.38 -14.53 15 13 C 0.20 3.93 7.03 -83.63 -0.59 3.34 15 14 C -0.19 -3.22 10.07 -39.20 -0.39 -3.62 15 15 C -0.08 -1.34 9.81 -39.67 -0.39 -1.72 15 16 C -0.10 -1.71 6.32 -39.49 -0.25 -1.96 15 17 Cl -0.10 -1.59 28.96 -51.86 -1.50 -3.09 15 18 C -0.06 -1.12 9.82 -39.57 -0.39 -1.51 15 19 C -0.12 -2.53 5.50 -104.26 -0.57 -3.10 15 20 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 21 H 0.05 1.01 8.14 -51.93 -0.42 0.58 15 22 H 0.07 1.75 7.22 -51.93 -0.37 1.38 15 23 H 0.40 6.17 8.96 -40.82 -0.37 5.81 15 24 H 0.11 1.62 8.06 -52.48 -0.42 1.20 15 25 H 0.12 1.65 8.06 -52.49 -0.42 1.23 15 26 H 0.13 2.48 8.06 -52.49 -0.42 2.05 15 LS Contribution 243.19 15.07 3.66 3.66 Total: -1.00 -26.83 243.19 -8.21 -35.05 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -2.40 Total: 2.84 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -3.26 Total: -16.10 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.30 Total: -38.03 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -1.50 Total: -3.09 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -26.83 -8.21 -35.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071487025.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.380 kcal (2) G-P(sol) polarization free energy of solvation -26.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds