Wall clock time and date at job start Mon Mar 30 2020 02:38:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.53007 * 109.46977 * 2 1
4 4 C 1.50703 * 109.46593 * 180.02562 * 3 2 1
5 5 N 1.30500 * 125.64718 * 270.27043 * 4 3 2
6 6 C 1.34129 * 109.25208 * 180.15252 * 5 4 3
7 7 C 1.50703 * 125.98719 * 179.88441 * 6 5 4
8 8 C 1.53000 * 109.46912 * 304.68954 * 7 6 5
9 9 C 1.34668 * 108.02423 * 359.61721 * 6 5 4
10 10 N 1.35040 * 125.64986 * 90.00384 * 4 3 2
11 11 C 1.46497 * 126.40005 * 359.97438 * 10 4 3
12 12 C 1.50703 * 109.47161 * 85.02618 * 11 10 4
13 13 H 1.07998 * 120.00171 * 0.02562 * 12 11 10
14 14 C 1.37883 * 120.00092 * 180.02562 * 12 11 10
15 15 N 1.31514 * 119.99774 * 179.97438 * 14 12 11
16 16 Si 1.86795 * 119.99945 * 0.02562 * 14 12 11
17 17 H 1.48493 * 109.47413 * 89.99730 * 16 14 12
18 18 H 1.48496 * 109.47105 * 210.00110 * 16 14 12
19 19 H 1.48508 * 109.47326 * 329.99737 * 16 14 12
20 20 H 1.09001 * 109.46597 * 300.00438 * 1 2 3
21 21 H 1.08999 * 109.47020 * 59.99606 * 1 2 3
22 22 H 1.08993 * 109.47234 * 179.97438 * 1 2 3
23 23 H 1.09006 * 109.46797 * 240.00280 * 2 1 3
24 24 H 1.08991 * 109.46989 * 120.00064 * 2 1 3
25 25 H 1.08999 * 109.46928 * 60.00140 * 3 2 1
26 26 H 1.08996 * 109.46883 * 299.99784 * 3 2 1
27 27 H 1.09002 * 109.47152 * 184.68726 * 7 6 5
28 28 H 1.09001 * 109.46980 * 64.68827 * 7 6 5
29 29 H 1.09001 * 109.47194 * 299.99742 * 8 7 6
30 30 H 1.08992 * 109.47399 * 59.99914 * 8 7 6
31 31 H 1.09004 * 109.46724 * 180.02562 * 8 7 6
32 32 H 1.07991 * 126.59540 * 180.20574 * 9 6 5
33 33 H 1.09002 * 109.47638 * 205.02564 * 11 10 4
34 34 H 1.09003 * 109.47193 * 325.02915 * 11 10 4
35 35 H 0.96994 * 119.99536 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 3.5471 1.4425 -0.0006
5 7 4.3081 1.4373 1.0595
6 6 5.5947 1.4424 0.6804
7 6 6.7888 1.4414 1.5998
8 6 6.6888 2.6230 2.5667
9 6 5.6324 1.4426 -0.6658
10 7 4.3337 1.4427 -1.0983
11 6 3.8816 1.4425 -2.4918
12 6 3.6090 2.8578 -2.9317
13 1 3.7580 3.6758 -2.2423
14 6 3.1693 3.1086 -4.2142
15 7 2.9309 4.3438 -4.5979
16 14 2.9108 1.6939 -5.4063
17 1 1.5159 1.1980 -5.2911
18 1 3.1560 2.1643 -6.7933
19 1 3.8553 0.5946 -5.0822
20 1 -0.3632 0.5139 0.8900
21 1 -0.3633 0.5139 -0.8899
22 1 -0.3633 -1.0276 -0.0005
23 1 1.8933 -0.5138 -0.8901
24 1 1.8933 -0.5138 0.8899
25 1 1.6767 1.9564 0.8900
26 1 1.6767 1.9563 -0.8900
27 1 7.7013 1.5305 1.0103
28 1 6.8111 0.5099 2.1654
29 1 6.6665 3.5545 2.0011
30 1 5.7764 2.5339 3.1561
31 1 7.5527 2.6225 3.2314
32 1 6.5171 1.4430 -1.2850
33 1 4.6553 1.0079 -3.1248
34 1 2.9686 0.8532 -2.5775
35 1 2.6220 4.5202 -5.5002
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000075580357.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:53
Heat of formation + Delta-G solvation = 26.267826 kcal
Electronic energy + Delta-G solvation = -15207.006435 eV
Core-core repulsion = 12818.917906 eV
Total energy + Delta-G solvation = -2388.088529 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 222.143 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-41.33266 -34.99934 -34.20911 -32.93414 -31.69551 -29.21994 -27.74209 -25.96980
-23.22110 -22.43322 -21.26019 -19.55842 -18.78937 -17.20266 -15.92096 -14.85986
-14.68542 -14.34341 -13.89631 -13.65731 -13.35995 -13.11497 -12.65374 -12.64835
-12.20099 -11.76072 -11.59829 -11.41211 -11.19223 -10.95086 -10.89476 -10.81109
-10.65608 -10.37646 -10.29952 -9.79414 -9.17255 -8.86471 -8.52016 -7.45030
-6.34939 -4.39573 2.90215 3.08048 3.15103 3.17073 3.76148 3.85165
4.13702 4.93289 4.94780 5.32053 5.37630 5.41671 5.45273 5.69272
5.80224 5.80939 5.93764 6.05187 6.09714 6.13493 6.16802 6.19626
6.32075 6.35095 6.39587 6.47233 6.61101 6.64757 6.73133 7.20299
7.32290 7.54944 7.97607 8.26489 8.69838 8.90130 9.20491 10.77252
Molecular weight = 222.14amu
Principal moments of inertia in cm(-1)
A = 0.021020 B = 0.009495 C = 0.007318
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1331.767952 B = 2948.327492 C = 3825.296055
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.116 4.116
3 C -0.034 4.034
4 C 0.210 3.790
5 N -0.502 5.502
6 C -0.022 4.022
7 C -0.028 4.028
8 C -0.140 4.140
9 C -0.051 4.051
10 N -0.420 5.420
11 C 0.204 3.796
12 C -0.546 4.546
13 H 0.081 0.919
14 C 0.081 3.919
15 N -0.883 5.883
16 Si 0.872 3.128
17 H -0.270 1.270
18 H -0.279 1.279
19 H -0.265 1.265
20 H 0.054 0.946
21 H 0.057 0.943
22 H 0.051 0.949
23 H 0.057 0.943
24 H 0.063 0.937
25 H 0.084 0.916
26 H 0.090 0.910
27 H 0.065 0.935
28 H 0.063 0.937
29 H 0.050 0.950
30 H 0.059 0.941
31 H 0.046 0.954
32 H 0.162 0.838
33 H 0.044 0.956
34 H 0.041 0.959
35 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.041 -7.768 7.060 10.548
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.154 4.154
3 C -0.073 4.073
4 C -0.053 4.053
5 N -0.222 5.222
6 C -0.152 4.152
7 C -0.066 4.066
8 C -0.198 4.198
9 C -0.187 4.187
10 N -0.097 5.097
11 C 0.083 3.917
12 C -0.584 4.584
13 H 0.099 0.901
14 C -0.124 4.124
15 N -0.520 5.520
16 Si 0.698 3.302
17 H -0.195 1.195
18 H -0.205 1.205
19 H -0.190 1.190
20 H 0.074 0.926
21 H 0.076 0.924
22 H 0.070 0.930
23 H 0.076 0.924
24 H 0.082 0.918
25 H 0.102 0.898
26 H 0.108 0.892
27 H 0.084 0.916
28 H 0.081 0.919
29 H 0.069 0.931
30 H 0.078 0.922
31 H 0.065 0.935
32 H 0.179 0.821
33 H 0.062 0.938
34 H 0.059 0.941
35 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 0.635 -7.644 7.506 10.732
hybrid contribution 0.230 -0.482 -1.814 1.891
sum 0.864 -8.127 5.692 9.959
Atomic orbital electron populations
1.21760 0.95648 1.01284 1.02051 1.21462 0.95571 0.96364 1.02025
1.19982 0.85557 0.97506 1.04219 1.22895 0.95081 1.05808 0.81545
1.69944 1.01392 1.22064 1.28787 1.20438 0.93013 1.10300 0.91476
1.19635 0.92973 0.98602 0.95430 1.21639 1.01176 0.98158 0.98807
1.22321 0.87834 1.12943 0.95642 1.45490 1.05587 1.49911 1.08732
1.20091 0.96213 0.99767 0.75592 1.21141 1.47316 0.90704 0.99191
0.90054 1.24828 0.94211 0.95750 0.97619 1.69872 1.44032 1.18898
1.19179 0.86904 0.79480 0.82656 0.81124 1.19509 1.20465 1.18968
0.92645 0.92433 0.93003 0.92388 0.91805 0.89774 0.89170 0.91597
0.91862 0.93054 0.92206 0.93453 0.82101 0.93796 0.94069 0.92027
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16
2 C -0.12 -1.76 5.92 -26.72 -0.16 -1.92 16
3 C -0.03 -0.61 5.37 -27.88 -0.15 -0.76 16
4 C 0.21 4.42 7.16 -155.42 -1.11 3.31 16
5 N -0.50 -10.60 11.24 -7.07 -0.08 -10.68 16
6 C -0.02 -0.43 6.35 -82.85 -0.53 -0.95 16
7 C -0.03 -0.42 6.50 -27.88 -0.18 -0.61 16
8 C -0.14 -2.01 9.88 37.16 0.37 -1.65 16
9 C -0.05 -1.04 11.46 -16.56 -0.19 -1.23 16
10 N -0.42 -9.24 2.73 -115.19 -0.31 -9.55 16
11 C 0.20 4.69 4.50 -5.19 -0.02 4.67 16
12 C -0.55 -14.76 9.94 -34.44 -0.34 -15.10 16
13 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16
14 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16
15 N -0.88 -25.67 13.96 55.43 0.77 -24.90 16
16 Si 0.87 19.68 27.47 -169.99 -4.67 15.01 16
17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16
18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
19 H -0.27 -5.69 6.54 56.52 0.37 -5.32 16
20 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16
23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
25 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16
26 H 0.09 1.75 7.82 -51.93 -0.41 1.34 16
27 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16
28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
32 H 0.16 2.86 8.06 -52.49 -0.42 2.44 16
33 H 0.04 0.99 7.20 -51.93 -0.37 0.61 16
34 H 0.04 0.90 7.34 -51.93 -0.38 0.52 16
35 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16
LS Contribution 294.92 15.07 4.44 4.44
Total: -1.00 -29.80 294.92 -7.71 -37.51
By element:
Atomic # 1 Polarization: 7.65 SS G_CDS: -5.82 Total: 1.83 kcal
Atomic # 6 Polarization: -11.63 SS G_CDS: -2.04 Total: -13.67 kcal
Atomic # 7 Polarization: -45.51 SS G_CDS: 0.38 Total: -45.13 kcal
Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -29.80 -7.71 -37.51 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000075580357.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.780 kcal
(2) G-P(sol) polarization free energy of solvation -29.800 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.980 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.268 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds