Wall clock time and date at job start Mon Mar 30 2020 02:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46977 * 2 1 4 4 C 1.50703 * 109.46593 * 180.02562 * 3 2 1 5 5 N 1.30500 * 125.64718 * 270.27043 * 4 3 2 6 6 C 1.34129 * 109.25208 * 180.15252 * 5 4 3 7 7 C 1.50703 * 125.98719 * 179.88441 * 6 5 4 8 8 C 1.53000 * 109.46912 * 304.68954 * 7 6 5 9 9 C 1.34668 * 108.02423 * 359.61721 * 6 5 4 10 10 N 1.35040 * 125.64986 * 90.00384 * 4 3 2 11 11 C 1.46497 * 126.40005 * 359.97438 * 10 4 3 12 12 C 1.50703 * 109.47161 * 85.02618 * 11 10 4 13 13 H 1.07998 * 120.00171 * 0.02562 * 12 11 10 14 14 C 1.37883 * 120.00092 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99774 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 119.99945 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47413 * 89.99730 * 16 14 12 18 18 H 1.48496 * 109.47105 * 210.00110 * 16 14 12 19 19 H 1.48508 * 109.47326 * 329.99737 * 16 14 12 20 20 H 1.09001 * 109.46597 * 300.00438 * 1 2 3 21 21 H 1.08999 * 109.47020 * 59.99606 * 1 2 3 22 22 H 1.08993 * 109.47234 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46797 * 240.00280 * 2 1 3 24 24 H 1.08991 * 109.46989 * 120.00064 * 2 1 3 25 25 H 1.08999 * 109.46928 * 60.00140 * 3 2 1 26 26 H 1.08996 * 109.46883 * 299.99784 * 3 2 1 27 27 H 1.09002 * 109.47152 * 184.68726 * 7 6 5 28 28 H 1.09001 * 109.46980 * 64.68827 * 7 6 5 29 29 H 1.09001 * 109.47194 * 299.99742 * 8 7 6 30 30 H 1.08992 * 109.47399 * 59.99914 * 8 7 6 31 31 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 32 32 H 1.07991 * 126.59540 * 180.20574 * 9 6 5 33 33 H 1.09002 * 109.47638 * 205.02564 * 11 10 4 34 34 H 1.09003 * 109.47193 * 325.02915 * 11 10 4 35 35 H 0.96994 * 119.99536 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5471 1.4425 -0.0006 5 7 4.3081 1.4373 1.0595 6 6 5.5947 1.4424 0.6804 7 6 6.7888 1.4414 1.5998 8 6 6.6888 2.6230 2.5667 9 6 5.6324 1.4426 -0.6658 10 7 4.3337 1.4427 -1.0983 11 6 3.8816 1.4425 -2.4918 12 6 3.6090 2.8578 -2.9317 13 1 3.7580 3.6758 -2.2423 14 6 3.1693 3.1086 -4.2142 15 7 2.9309 4.3438 -4.5979 16 14 2.9108 1.6939 -5.4063 17 1 1.5159 1.1980 -5.2911 18 1 3.1560 2.1643 -6.7933 19 1 3.8553 0.5946 -5.0822 20 1 -0.3632 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 1.6767 1.9564 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 7.7013 1.5305 1.0103 28 1 6.8111 0.5099 2.1654 29 1 6.6665 3.5545 2.0011 30 1 5.7764 2.5339 3.1561 31 1 7.5527 2.6225 3.2314 32 1 6.5171 1.4430 -1.2850 33 1 4.6553 1.0079 -3.1248 34 1 2.9686 0.8532 -2.5775 35 1 2.6220 4.5202 -5.5002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075580357.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:52 Heat of formation + Delta-G solvation = 9.836707 kcal Electronic energy + Delta-G solvation = -15207.718942 eV Core-core repulsion = 12818.917906 eV Total energy + Delta-G solvation = -2388.801036 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.92461 -36.46499 -35.76777 -34.62889 -33.33844 -30.66901 -29.52479 -27.34108 -24.93695 -23.90484 -22.57995 -21.05953 -20.40641 -19.26824 -17.60517 -16.49466 -16.07079 -15.92455 -15.39002 -15.02996 -14.80668 -14.54267 -14.39917 -14.07385 -13.81063 -13.19990 -12.99688 -12.89877 -12.63241 -12.43102 -12.22040 -12.15553 -12.03883 -11.87714 -11.81061 -11.59077 -10.95015 -10.75306 -10.23284 -9.00583 -8.44212 -6.56304 1.29028 1.32735 1.33745 1.43587 2.20768 2.21740 2.23212 2.88268 3.52273 3.94287 4.09911 4.15317 4.20154 4.38329 4.44467 4.52173 4.53784 4.59416 4.66911 4.79427 4.90994 4.95835 5.01324 5.09874 5.16501 5.20455 5.25516 5.35311 5.44264 5.44627 5.71886 5.94055 6.06036 6.44344 6.53868 7.08968 7.30346 8.72163 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.021020 B = 0.009495 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.767952 B = 2948.327492 C = 3825.296055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.033 4.033 4 C 0.194 3.806 5 N -0.518 5.518 6 C -0.025 4.025 7 C -0.028 4.028 8 C -0.135 4.135 9 C -0.074 4.074 10 N -0.436 5.436 11 C 0.215 3.785 12 C -0.552 4.552 13 H 0.025 0.975 14 C 0.025 3.975 15 N -0.935 5.935 16 Si 0.947 3.053 17 H -0.256 1.256 18 H -0.277 1.277 19 H -0.242 1.242 20 H 0.064 0.936 21 H 0.052 0.948 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.182 0.818 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.324 -10.038 7.084 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.072 4.072 4 C -0.068 4.068 5 N -0.239 5.239 6 C -0.155 4.155 7 C -0.066 4.066 8 C -0.193 4.193 9 C -0.208 4.208 10 N -0.114 5.114 11 C 0.093 3.907 12 C -0.590 4.590 13 H 0.044 0.956 14 C -0.176 4.176 15 N -0.573 5.573 16 Si 0.769 3.231 17 H -0.180 1.180 18 H -0.203 1.203 19 H -0.165 1.165 20 H 0.083 0.917 21 H 0.071 0.929 22 H 0.090 0.910 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.199 0.801 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.935 -9.922 7.565 12.512 hybrid contribution 0.183 0.335 -1.710 1.753 sum 1.118 -9.587 5.855 11.289 Atomic orbital electron populations 1.21735 0.93485 1.02717 1.02328 1.21401 0.97349 0.93993 1.01796 1.20072 0.84084 0.99506 1.03509 1.23518 0.96326 1.05483 0.81501 1.69986 1.02330 1.22691 1.28879 1.21185 0.93678 1.08582 0.92060 1.19818 0.91968 0.99564 0.95288 1.21593 1.01904 0.97028 0.98753 1.22844 0.87958 1.13506 0.96542 1.45545 1.06488 1.50984 1.08429 1.19879 0.97166 0.97102 0.76509 1.21195 1.47666 0.91495 0.98667 0.95642 1.25814 0.93371 0.98825 0.99572 1.70029 1.45381 1.21789 1.20061 0.85721 0.80513 0.79095 0.77816 1.18022 1.20262 1.16487 0.91669 0.92914 0.90967 0.93002 0.91550 0.89052 0.91186 0.89304 0.90384 0.94608 0.93797 0.90154 0.80127 0.92520 0.92595 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.91 71.98 0.71 -2.68 16 2 C -0.11 -3.13 5.92 30.60 0.18 -2.95 16 3 C -0.03 -1.18 5.37 29.85 0.16 -1.02 16 4 C 0.19 8.24 7.16 138.13 0.99 9.23 16 5 N -0.52 -21.80 11.24 -176.28 -1.98 -23.79 16 6 C -0.03 -0.96 6.35 41.39 0.26 -0.70 16 7 C -0.03 -0.80 6.50 29.85 0.19 -0.60 16 8 C -0.14 -3.67 9.88 71.98 0.71 -2.96 16 9 C -0.07 -2.97 11.46 83.09 0.95 -2.01 16 10 N -0.44 -19.20 2.73 -518.34 -1.42 -20.62 16 11 C 0.21 9.76 4.50 85.63 0.39 10.15 16 12 C -0.55 -30.67 9.94 25.60 0.25 -30.42 16 13 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16 14 C 0.02 1.34 5.47 84.66 0.46 1.80 16 15 N -0.93 -55.77 13.96 21.45 0.30 -55.47 16 16 Si 0.95 39.76 27.47 68.60 1.88 41.65 16 17 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 18 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 20 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 25 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 26 H 0.07 2.79 7.82 -2.39 -0.02 2.77 16 27 H 0.09 2.11 8.11 -2.39 -0.02 2.09 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.18 6.23 8.06 -2.92 -0.02 6.21 16 33 H 0.06 2.43 7.20 -2.39 -0.02 2.42 16 34 H 0.06 2.37 7.34 -2.39 -0.02 2.36 16 35 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -65.96 294.92 5.03 -60.93 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.98 Total: 19.45 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 5.27 Total: -22.15 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -3.10 Total: -99.87 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.88 Total: 41.65 kcal Total: -65.96 5.03 -60.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075580357.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.763 kcal (2) G-P(sol) polarization free energy of solvation -65.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds