Wall clock time and date at job start Mon Mar 30 2020 02:38:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.53007 * 109.46977 * 2 1
4 4 C 1.50703 * 109.46593 * 180.02562 * 3 2 1
5 5 N 1.30500 * 125.64718 * 270.27043 * 4 3 2
6 6 C 1.34129 * 109.25208 * 180.15252 * 5 4 3
7 7 C 1.50703 * 125.98719 * 179.88441 * 6 5 4
8 8 C 1.53000 * 109.46912 * 304.68954 * 7 6 5
9 9 C 1.34668 * 108.02423 * 359.61721 * 6 5 4
10 10 N 1.35040 * 125.64986 * 90.00384 * 4 3 2
11 11 C 1.46497 * 126.40005 * 359.97438 * 10 4 3
12 12 C 1.50703 * 109.47161 * 85.02618 * 11 10 4
13 13 H 1.07998 * 120.00171 * 0.02562 * 12 11 10
14 14 C 1.37883 * 120.00092 * 180.02562 * 12 11 10
15 15 N 1.31514 * 119.99774 * 179.97438 * 14 12 11
16 16 Si 1.86795 * 119.99945 * 0.02562 * 14 12 11
17 17 H 1.48493 * 109.47413 * 89.99730 * 16 14 12
18 18 H 1.48496 * 109.47105 * 210.00110 * 16 14 12
19 19 H 1.48508 * 109.47326 * 329.99737 * 16 14 12
20 20 H 1.09001 * 109.46597 * 300.00438 * 1 2 3
21 21 H 1.08999 * 109.47020 * 59.99606 * 1 2 3
22 22 H 1.08993 * 109.47234 * 179.97438 * 1 2 3
23 23 H 1.09006 * 109.46797 * 240.00280 * 2 1 3
24 24 H 1.08991 * 109.46989 * 120.00064 * 2 1 3
25 25 H 1.08999 * 109.46928 * 60.00140 * 3 2 1
26 26 H 1.08996 * 109.46883 * 299.99784 * 3 2 1
27 27 H 1.09002 * 109.47152 * 184.68726 * 7 6 5
28 28 H 1.09001 * 109.46980 * 64.68827 * 7 6 5
29 29 H 1.09001 * 109.47194 * 299.99742 * 8 7 6
30 30 H 1.08992 * 109.47399 * 59.99914 * 8 7 6
31 31 H 1.09004 * 109.46724 * 180.02562 * 8 7 6
32 32 H 1.07991 * 126.59540 * 180.20574 * 9 6 5
33 33 H 1.09002 * 109.47638 * 205.02564 * 11 10 4
34 34 H 1.09003 * 109.47193 * 325.02915 * 11 10 4
35 35 H 0.96994 * 119.99536 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 3.5471 1.4425 -0.0006
5 7 4.3081 1.4373 1.0595
6 6 5.5947 1.4424 0.6804
7 6 6.7888 1.4414 1.5998
8 6 6.6888 2.6230 2.5667
9 6 5.6324 1.4426 -0.6658
10 7 4.3337 1.4427 -1.0983
11 6 3.8816 1.4425 -2.4918
12 6 3.6090 2.8578 -2.9317
13 1 3.7580 3.6758 -2.2423
14 6 3.1693 3.1086 -4.2142
15 7 2.9309 4.3438 -4.5979
16 14 2.9108 1.6939 -5.4063
17 1 1.5159 1.1980 -5.2911
18 1 3.1560 2.1643 -6.7933
19 1 3.8553 0.5946 -5.0822
20 1 -0.3632 0.5139 0.8900
21 1 -0.3633 0.5139 -0.8899
22 1 -0.3633 -1.0276 -0.0005
23 1 1.8933 -0.5138 -0.8901
24 1 1.8933 -0.5138 0.8899
25 1 1.6767 1.9564 0.8900
26 1 1.6767 1.9563 -0.8900
27 1 7.7013 1.5305 1.0103
28 1 6.8111 0.5099 2.1654
29 1 6.6665 3.5545 2.0011
30 1 5.7764 2.5339 3.1561
31 1 7.5527 2.6225 3.2314
32 1 6.5171 1.4430 -1.2850
33 1 4.6553 1.0079 -3.1248
34 1 2.9686 0.8532 -2.5775
35 1 2.6220 4.5202 -5.5002
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000075580357.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:52
Heat of formation + Delta-G solvation = 9.836707 kcal
Electronic energy + Delta-G solvation = -15207.718942 eV
Core-core repulsion = 12818.917906 eV
Total energy + Delta-G solvation = -2388.801036 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 222.143 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-42.92461 -36.46499 -35.76777 -34.62889 -33.33844 -30.66901 -29.52479 -27.34108
-24.93695 -23.90484 -22.57995 -21.05953 -20.40641 -19.26824 -17.60517 -16.49466
-16.07079 -15.92455 -15.39002 -15.02996 -14.80668 -14.54267 -14.39917 -14.07385
-13.81063 -13.19990 -12.99688 -12.89877 -12.63241 -12.43102 -12.22040 -12.15553
-12.03883 -11.87714 -11.81061 -11.59077 -10.95015 -10.75306 -10.23284 -9.00583
-8.44212 -6.56304 1.29028 1.32735 1.33745 1.43587 2.20768 2.21740
2.23212 2.88268 3.52273 3.94287 4.09911 4.15317 4.20154 4.38329
4.44467 4.52173 4.53784 4.59416 4.66911 4.79427 4.90994 4.95835
5.01324 5.09874 5.16501 5.20455 5.25516 5.35311 5.44264 5.44627
5.71886 5.94055 6.06036 6.44344 6.53868 7.08968 7.30346 8.72163
Molecular weight = 222.14amu
Principal moments of inertia in cm(-1)
A = 0.021020 B = 0.009495 C = 0.007318
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1331.767952 B = 2948.327492 C = 3825.296055
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.107 4.107
3 C -0.033 4.033
4 C 0.194 3.806
5 N -0.518 5.518
6 C -0.025 4.025
7 C -0.028 4.028
8 C -0.135 4.135
9 C -0.074 4.074
10 N -0.436 5.436
11 C 0.215 3.785
12 C -0.552 4.552
13 H 0.025 0.975
14 C 0.025 3.975
15 N -0.935 5.935
16 Si 0.947 3.053
17 H -0.256 1.256
18 H -0.277 1.277
19 H -0.242 1.242
20 H 0.064 0.936
21 H 0.052 0.948
22 H 0.071 0.929
23 H 0.051 0.949
24 H 0.066 0.934
25 H 0.091 0.909
26 H 0.070 0.930
27 H 0.088 0.912
28 H 0.078 0.922
29 H 0.035 0.965
30 H 0.043 0.957
31 H 0.080 0.920
32 H 0.182 0.818
33 H 0.057 0.943
34 H 0.056 0.944
35 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.324 -10.038 7.084 12.357
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.145 4.145
3 C -0.072 4.072
4 C -0.068 4.068
5 N -0.239 5.239
6 C -0.155 4.155
7 C -0.066 4.066
8 C -0.193 4.193
9 C -0.208 4.208
10 N -0.114 5.114
11 C 0.093 3.907
12 C -0.590 4.590
13 H 0.044 0.956
14 C -0.176 4.176
15 N -0.573 5.573
16 Si 0.769 3.231
17 H -0.180 1.180
18 H -0.203 1.203
19 H -0.165 1.165
20 H 0.083 0.917
21 H 0.071 0.929
22 H 0.090 0.910
23 H 0.070 0.930
24 H 0.084 0.916
25 H 0.109 0.891
26 H 0.088 0.912
27 H 0.107 0.893
28 H 0.096 0.904
29 H 0.054 0.946
30 H 0.062 0.938
31 H 0.098 0.902
32 H 0.199 0.801
33 H 0.075 0.925
34 H 0.074 0.926
35 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 0.935 -9.922 7.565 12.512
hybrid contribution 0.183 0.335 -1.710 1.753
sum 1.118 -9.587 5.855 11.289
Atomic orbital electron populations
1.21735 0.93485 1.02717 1.02328 1.21401 0.97349 0.93993 1.01796
1.20072 0.84084 0.99506 1.03509 1.23518 0.96326 1.05483 0.81501
1.69986 1.02330 1.22691 1.28879 1.21185 0.93678 1.08582 0.92060
1.19818 0.91968 0.99564 0.95288 1.21593 1.01904 0.97028 0.98753
1.22844 0.87958 1.13506 0.96542 1.45545 1.06488 1.50984 1.08429
1.19879 0.97166 0.97102 0.76509 1.21195 1.47666 0.91495 0.98667
0.95642 1.25814 0.93371 0.98825 0.99572 1.70029 1.45381 1.21789
1.20061 0.85721 0.80513 0.79095 0.77816 1.18022 1.20262 1.16487
0.91669 0.92914 0.90967 0.93002 0.91550 0.89052 0.91186 0.89304
0.90384 0.94608 0.93797 0.90154 0.80127 0.92520 0.92595 0.91689
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.39 9.91 71.98 0.71 -2.68 16
2 C -0.11 -3.13 5.92 30.60 0.18 -2.95 16
3 C -0.03 -1.18 5.37 29.85 0.16 -1.02 16
4 C 0.19 8.24 7.16 138.13 0.99 9.23 16
5 N -0.52 -21.80 11.24 -176.28 -1.98 -23.79 16
6 C -0.03 -0.96 6.35 41.39 0.26 -0.70 16
7 C -0.03 -0.80 6.50 29.85 0.19 -0.60 16
8 C -0.14 -3.67 9.88 71.98 0.71 -2.96 16
9 C -0.07 -2.97 11.46 83.09 0.95 -2.01 16
10 N -0.44 -19.20 2.73 -518.34 -1.42 -20.62 16
11 C 0.21 9.76 4.50 85.63 0.39 10.15 16
12 C -0.55 -30.67 9.94 25.60 0.25 -30.42 16
13 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16
14 C 0.02 1.34 5.47 84.66 0.46 1.80 16
15 N -0.93 -55.77 13.96 21.45 0.30 -55.47 16
16 Si 0.95 39.76 27.47 68.60 1.88 41.65 16
17 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16
18 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16
19 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16
20 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
21 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16
22 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16
23 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16
24 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16
25 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16
26 H 0.07 2.79 7.82 -2.39 -0.02 2.77 16
27 H 0.09 2.11 8.11 -2.39 -0.02 2.09 16
28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16
29 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16
30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16
31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16
32 H 0.18 6.23 8.06 -2.92 -0.02 6.21 16
33 H 0.06 2.43 7.20 -2.39 -0.02 2.42 16
34 H 0.06 2.37 7.34 -2.39 -0.02 2.36 16
35 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16
Total: -1.00 -65.96 294.92 5.03 -60.93
By element:
Atomic # 1 Polarization: 18.47 SS G_CDS: 0.98 Total: 19.45 kcal
Atomic # 6 Polarization: -27.42 SS G_CDS: 5.27 Total: -22.15 kcal
Atomic # 7 Polarization: -96.77 SS G_CDS: -3.10 Total: -99.87 kcal
Atomic # 14 Polarization: 39.76 SS G_CDS: 1.88 Total: 41.65 kcal
Total: -65.96 5.03 -60.93 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000075580357.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.763 kcal
(2) G-P(sol) polarization free energy of solvation -65.958 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.804 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.926 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.837 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds