Wall clock time and date at job start Mon Mar 30 2020 03:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.30483 * 59.99936 * 9 7 2 11 11 C 1.53196 * 109.30294 * 179.59812 * 9 7 2 12 12 C 1.52067 * 108.03461 * 177.26884 * 11 9 7 13 13 N 1.30923 * 126.48164 * 152.51263 * 12 11 9 14 14 C 1.29424 * 118.07452 * 180.16614 * 13 12 11 15 15 S 1.71005 * 110.66025 * 359.97438 * 14 13 12 16 16 C 1.38484 * 120.85157 * 332.56506 * 12 11 9 17 17 C 1.41532 * 123.31873 * 359.62213 * 16 12 11 18 18 O 1.21423 * 121.16198 * 178.59177 * 17 16 12 19 19 C 1.51292 * 117.58172 * 358.41889 * 17 16 12 20 20 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.74354 * 296.90106 * 11 9 7 22 22 H 1.09002 * 109.75206 * 57.63300 * 11 9 7 23 23 H 1.07995 * 124.67279 * 179.97438 * 14 13 12 24 24 H 1.08999 * 109.58108 * 271.34278 * 19 17 16 25 25 H 1.08997 * 109.25275 * 151.52548 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8716 -0.6794 0.8920 11 6 4.0181 -2.6398 0.0118 12 6 5.5369 -2.6071 -0.0568 13 7 6.3570 -3.5125 0.4139 14 6 7.6282 -3.3176 0.2682 15 16 7.9230 -1.8444 -0.5485 16 6 6.1980 -1.5497 -0.6591 17 6 5.5303 -0.4501 -1.2492 18 8 6.1500 0.4689 -1.7447 19 6 4.0174 -0.4640 -1.2433 20 1 -0.4850 0.8400 -0.0004 21 1 3.7014 -3.1341 0.9302 22 1 3.6219 -3.1752 -0.8510 23 1 8.3969 -3.9925 0.6146 24 1 3.6533 -0.9736 -2.1354 25 1 3.6486 0.5616 -1.2369 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075580839.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:21 Heat of formation + Delta-G solvation = -14.909798 kcal Electronic energy + Delta-G solvation = -12965.532490 eV Core-core repulsion = 10649.026385 eV Total energy + Delta-G solvation = -2316.506105 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.61548 -39.86750 -37.16976 -34.25690 -31.32164 -30.23535 -27.28683 -26.12318 -22.91566 -22.34186 -19.49539 -19.17611 -18.75671 -17.32937 -16.85497 -16.43254 -15.71471 -15.37395 -15.35282 -14.89141 -14.69895 -14.53500 -13.51634 -13.25148 -12.73031 -12.31940 -12.14368 -12.01147 -11.82260 -11.34606 -10.91158 -10.77869 -10.63070 -10.57443 -9.79386 -8.34743 -6.38360 -1.04065 0.21810 0.63918 1.09215 1.25459 1.33086 1.38225 1.81440 2.24817 2.98601 2.99519 3.31463 3.80512 3.95082 4.10167 4.20942 4.42325 4.59090 4.74183 4.80153 4.97143 5.27315 5.42477 5.54919 6.22735 6.29388 6.56712 6.70295 7.27168 8.81110 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.043312 B = 0.010184 C = 0.008651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.312844 B = 2748.686579 C = 3235.869168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.031 3.969 3 Si 0.922 3.078 4 H -0.268 1.268 5 H -0.260 1.260 6 H -0.291 1.291 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.026 3.974 10 H 0.027 0.973 11 C -0.028 4.028 12 C 0.167 3.833 13 N -0.507 5.507 14 C 0.057 3.943 15 S 0.238 5.762 16 C -0.390 4.390 17 C 0.436 3.564 18 O -0.505 6.505 19 C -0.162 4.162 20 H 0.268 0.732 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.255 0.745 24 H 0.115 0.885 25 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.503 -5.851 -0.163 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.169 4.169 3 Si 0.751 3.249 4 H -0.195 1.195 5 H -0.185 1.185 6 H -0.218 1.218 7 C -0.550 4.550 8 H 0.077 0.923 9 C 0.007 3.993 10 H 0.045 0.955 11 C -0.067 4.067 12 C 0.025 3.975 13 N -0.221 5.221 14 C -0.235 4.235 15 S 0.497 5.503 16 C -0.512 4.512 17 C 0.318 3.682 18 O -0.387 6.387 19 C -0.201 4.201 20 H 0.078 0.922 21 H 0.112 0.888 22 H 0.119 0.881 23 H 0.271 0.729 24 H 0.133 0.867 25 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.552 -5.267 -0.441 18.331 hybrid contribution -1.172 0.960 0.036 1.516 sum 16.380 -4.306 -0.405 16.942 Atomic orbital electron populations 1.69974 1.07646 1.28047 1.51847 1.25596 0.95160 1.01776 0.94320 0.86252 0.79095 0.80857 0.78744 1.19472 1.18463 1.21818 1.21141 0.89795 0.93828 1.50239 0.92253 1.19048 0.95012 0.92696 0.92552 0.95535 1.20549 0.83805 0.97821 1.04545 1.22400 0.98400 0.86705 0.89982 1.65663 1.03315 1.30651 1.22440 1.29741 0.96149 0.99804 0.97774 1.83533 1.00698 1.16987 1.49080 1.25737 0.99699 1.06210 1.19547 1.20593 0.92079 0.82417 0.73113 1.90504 1.71210 1.37124 1.39841 1.22622 0.91099 1.02543 1.03884 0.92240 0.88790 0.88064 0.72883 0.86667 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.89 13.96 21.45 0.30 -55.59 15 2 C 0.03 1.70 5.45 84.65 0.46 2.16 15 3 Si 0.92 44.50 24.35 68.60 1.67 46.17 15 4 H -0.27 -12.65 6.87 99.48 0.68 -11.97 15 5 H -0.26 -12.17 6.52 99.48 0.65 -11.52 15 6 H -0.29 -13.90 7.11 99.48 0.71 -13.19 15 7 C -0.51 -26.97 9.13 25.60 0.23 -26.74 15 8 H 0.06 3.35 7.98 -2.91 -0.02 3.32 15 9 C 0.03 1.16 1.64 -11.51 -0.02 1.14 15 10 H 0.03 1.21 7.19 -2.39 -0.02 1.20 15 11 C -0.03 -1.01 5.53 30.35 0.17 -0.85 15 12 C 0.17 5.53 6.92 43.19 0.30 5.83 15 13 N -0.51 -14.22 10.46 -186.91 -1.95 -16.18 15 14 C 0.06 1.11 12.21 130.60 1.59 2.70 15 15 S 0.24 5.54 23.10 -56.49 -1.30 4.24 15 16 C -0.39 -13.23 6.26 23.14 0.14 -13.08 15 17 C 0.44 17.39 6.93 26.69 0.19 17.58 15 18 O -0.51 -21.96 17.83 -3.47 -0.06 -22.02 15 19 C -0.16 -6.87 4.82 30.00 0.14 -6.73 15 20 H 0.27 15.13 8.31 -92.71 -0.77 14.36 15 21 H 0.09 3.31 8.14 -2.39 -0.02 3.29 15 22 H 0.10 3.46 8.14 -2.39 -0.02 3.44 15 23 H 0.26 2.02 8.06 -2.91 -0.02 2.00 15 24 H 0.12 4.55 8.14 -2.39 -0.02 4.53 15 25 H 0.06 2.88 3.19 -2.39 -0.01 2.87 15 Total: -1.00 -66.05 228.24 3.00 -63.05 By element: Atomic # 1 Polarization: -2.81 SS G_CDS: 1.14 Total: -1.67 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 3.21 Total: -17.99 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -1.66 Total: -71.77 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.67 Total: 46.17 kcal Atomic # 16 Polarization: 5.54 SS G_CDS: -1.30 Total: 4.24 kcal Total: -66.05 3.00 -63.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075580839.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.138 kcal (2) G-P(sol) polarization free energy of solvation -66.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds