Wall clock time and date at job start Mon Mar 30 2020 03:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86803 * 119.99793 * 2 1 4 4 H 1.48509 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47299 * 299.99506 * 3 2 1 6 6 H 1.48500 * 109.47237 * 59.99845 * 3 2 1 7 7 C 1.40151 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.41183 * 120.00206 * 0.02562 * 7 2 1 10 10 N 1.31916 * 126.53446 * 359.97438 * 9 7 2 11 11 O 1.41320 * 109.36957 * 180.02562 * 10 9 7 12 12 C 1.34946 * 109.71938 * 359.97438 * 11 10 9 13 13 C 1.39040 * 132.97004 * 180.02562 * 12 11 10 14 14 C 1.37824 * 119.96327 * 180.25492 * 13 12 11 15 15 C 1.38791 * 120.53373 * 359.49031 * 14 13 12 16 16 Cl 1.73596 * 119.87145 * 180.28232 * 15 14 13 17 17 C 1.37944 * 120.25417 * 0.50755 * 15 14 13 18 18 C 1.39254 * 119.71668 * 359.75382 * 17 15 14 19 19 H 0.97006 * 119.99969 * 0.02562 * 1 2 3 20 20 H 1.08002 * 120.01548 * 359.97209 * 13 12 11 21 21 H 1.07995 * 119.73020 * 179.74445 * 14 13 12 22 22 H 1.08004 * 120.14254 * 179.76987 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3965 -1.2126 6 1 1.8818 2.3965 1.2125 7 6 2.0074 -1.2137 0.0005 8 1 3.0875 -1.2138 0.0010 9 6 1.3016 -2.4365 0.0005 10 7 -0.0090 -2.5866 0.0005 11 8 -0.3229 -3.9645 0.0011 12 6 0.8146 -4.6906 0.0010 13 6 1.0660 -6.0581 0.0009 14 6 2.3649 -6.5192 0.0060 15 6 3.4293 -5.6286 0.0006 16 17 5.0584 -6.2282 -0.0003 17 6 3.1977 -4.2687 0.0006 18 6 1.8896 -3.7913 0.0008 19 1 -0.4850 0.8401 -0.0004 20 1 0.2440 -6.7586 0.0014 21 1 2.5558 -7.5821 0.0101 22 1 4.0274 -3.5772 0.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075581073.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:24 Heat of formation + Delta-G solvation = 15.735762 kcal Electronic energy + Delta-G solvation = -12329.312397 eV Core-core repulsion = 9876.258382 eV Total energy + Delta-G solvation = -2453.054015 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.014 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.88220 -38.61055 -37.01726 -36.15808 -33.62598 -31.13529 -30.40087 -28.38770 -24.09096 -23.31342 -22.30933 -19.20735 -18.19453 -17.50105 -16.68379 -16.55805 -16.29055 -15.10992 -14.87010 -14.53822 -14.00205 -13.56974 -13.19967 -13.15208 -12.89330 -12.26962 -12.01418 -11.99847 -11.95972 -11.73245 -11.21945 -10.87633 -9.69688 -9.26454 -8.74227 -6.98381 -0.00387 0.25940 1.14724 1.29895 1.39487 1.58851 1.89126 2.16071 2.54103 2.59494 3.20941 3.74573 3.86654 4.06938 4.19043 4.48804 4.68496 4.93694 5.05605 5.16846 5.18606 5.36200 5.68882 6.04134 6.38151 6.58630 7.43279 8.24784 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.034115 B = 0.008755 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.552396 B = 3197.285283 C = 4007.994752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.017 3.983 3 Si 1.009 2.991 4 H -0.242 1.242 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.442 4.442 8 H 0.112 0.888 9 C 0.186 3.814 10 N -0.408 5.408 11 O -0.183 6.183 12 C 0.059 3.941 13 C -0.134 4.134 14 C -0.054 4.054 15 C -0.084 4.084 16 Cl -0.057 7.057 17 C -0.041 4.041 18 C -0.197 4.197 19 H 0.292 0.708 20 H 0.163 0.837 21 H 0.180 0.820 22 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.883 -7.036 0.007 11.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.203 4.203 3 Si 0.827 3.173 4 H -0.164 1.164 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.480 4.480 8 H 0.130 0.870 9 C 0.031 3.969 10 N -0.185 5.185 11 O -0.178 6.178 12 C 0.004 3.996 13 C -0.154 4.154 14 C -0.073 4.073 15 C -0.111 4.111 16 Cl -0.028 7.028 17 C -0.061 4.061 18 C -0.201 4.201 19 H 0.103 0.897 20 H 0.180 0.820 21 H 0.198 0.802 22 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.582 -6.667 0.007 10.096 hybrid contribution 0.618 0.517 0.000 0.806 sum 8.200 -6.150 0.007 10.250 Atomic orbital electron populations 1.69932 1.09679 1.31163 1.30866 1.27270 0.95789 1.05691 0.91592 0.84755 0.79507 0.74093 0.78970 1.16443 1.18894 1.18904 1.19489 0.95500 0.87854 1.45186 0.86975 1.21639 0.90697 0.92712 0.91857 1.81292 1.13608 0.80846 1.42741 1.88960 1.27877 1.18478 1.82456 1.21120 0.87770 0.95008 0.95705 1.20272 0.98579 0.89465 1.07087 1.21143 0.88895 1.01086 0.96170 1.20558 0.86831 0.92567 1.11094 1.98327 1.19388 1.87759 1.97326 1.20546 0.94875 0.94549 0.96164 1.21266 0.95214 0.92673 1.10940 0.89689 0.81962 0.80225 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -43.75 11.97 21.86 0.26 -43.49 14 2 C 0.02 0.85 5.50 85.33 0.47 1.32 14 3 Si 1.01 36.67 29.56 68.60 2.03 38.69 14 4 H -0.24 -8.08 7.11 99.48 0.71 -7.38 14 5 H -0.26 -9.27 7.11 99.48 0.71 -8.56 14 6 H -0.26 -9.28 7.11 99.48 0.71 -8.57 14 7 C -0.44 -23.42 9.44 23.46 0.22 -23.20 14 8 H 0.11 5.28 7.85 -2.91 -0.02 5.26 14 9 C 0.19 10.58 6.95 42.35 0.29 10.87 14 10 N -0.41 -25.22 11.13 -48.34 -0.54 -25.76 14 11 O -0.18 -10.31 12.04 28.66 0.35 -9.97 14 12 C 0.06 2.77 7.45 22.93 0.17 2.95 14 13 C -0.13 -4.61 10.07 22.36 0.23 -4.39 14 14 C -0.05 -1.53 9.80 22.30 0.22 -1.31 14 15 C -0.08 -2.64 6.32 22.33 0.14 -2.50 14 16 Cl -0.06 -1.45 28.95 -2.72 -0.08 -1.53 14 17 C -0.04 -1.59 9.86 22.44 0.22 -1.37 14 18 C -0.20 -9.57 6.30 -20.07 -0.13 -9.69 14 19 H 0.29 14.42 8.29 -92.70 -0.77 13.65 14 20 H 0.16 4.47 8.06 -2.91 -0.02 4.44 14 21 H 0.18 3.46 8.06 -2.91 -0.02 3.44 14 22 H 0.14 5.04 8.06 -2.91 -0.02 5.02 14 Total: -1.00 -67.19 226.97 5.11 -62.08 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.26 Total: 7.31 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 1.84 Total: -27.33 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -0.28 Total: -69.25 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.35 Total: -9.97 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.69 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -67.19 5.11 -62.08 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075581073.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.816 kcal (2) G-P(sol) polarization free energy of solvation -67.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds