Wall clock time and date at job start Mon Mar 30 2020 03:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86804 * 119.99940 * 2 1 4 4 H 1.48502 * 109.46804 * 269.99810 * 3 2 1 5 5 H 1.48494 * 109.47420 * 29.99844 * 3 2 1 6 6 H 1.48498 * 109.46957 * 149.99996 * 3 2 1 7 7 C 1.40269 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99417 * 179.97438 * 7 2 1 9 9 C 1.40112 * 120.00334 * 0.02562 * 7 2 1 10 10 N 1.31058 * 125.17897 * 0.02562 * 9 7 2 11 11 C 1.31756 * 116.32944 * 179.97438 * 10 9 7 12 12 C 1.39225 * 114.02178 * 0.08587 * 11 10 9 13 13 S 1.70549 * 109.19812 * 359.89497 * 12 11 10 14 14 C 1.51028 * 123.92017 * 179.83448 * 12 11 10 15 15 C 1.53067 * 109.31983 * 339.75747 * 14 12 11 16 16 C 1.53193 * 110.19923 * 52.54106 * 15 14 12 17 17 C 1.48848 * 125.98316 * 180.37121 * 11 10 9 18 18 O 1.21331 * 122.23681 * 347.65069 * 17 11 10 19 19 H 0.97003 * 119.99771 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.49997 * 99.71220 * 14 12 11 21 21 H 1.08999 * 109.49716 * 219.78002 * 14 12 11 22 22 H 1.08999 * 109.35087 * 172.76516 * 15 14 12 23 23 H 1.09005 * 109.35031 * 292.47158 * 15 14 12 24 24 H 1.09006 * 109.62484 * 54.28543 * 16 15 14 25 25 H 1.08991 * 109.63284 * 174.67367 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5382 1.4402 0.7000 7 6 2.0079 -1.2148 0.0005 8 1 3.0879 -1.2148 0.0001 9 6 1.3073 -2.4282 0.0005 10 7 0.0021 -2.5465 -0.0004 11 6 -0.4733 -3.7753 -0.0008 12 6 0.5081 -4.7627 0.0019 13 16 2.0458 -4.0250 0.0018 14 6 0.2134 -6.2440 0.0057 15 6 -1.2147 -6.4749 0.5059 16 6 -2.2005 -5.6178 -0.2943 17 6 -1.9122 -4.1563 -0.0096 18 8 -2.7959 -3.3523 0.2020 19 1 -0.4850 0.8401 -0.0004 20 1 0.3125 -6.6372 -1.0060 21 1 0.9168 -6.7532 0.6645 22 1 -1.4729 -7.5273 0.3882 23 1 -1.2765 -6.2034 1.5598 24 1 -2.0746 -5.8130 -1.3593 25 1 -3.2209 -5.8585 0.0039 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083117026.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:23 Heat of formation + Delta-G solvation = -21.607548 kcal Electronic energy + Delta-G solvation = -12775.397358 eV Core-core repulsion = 10458.600816 eV Total energy + Delta-G solvation = -2316.796541 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.02677 -36.81904 -35.08980 -33.45607 -29.24691 -28.34499 -25.97985 -23.08325 -21.32811 -20.79252 -17.83751 -16.76476 -16.27744 -15.33080 -14.66419 -14.40225 -13.94480 -13.55291 -13.21872 -13.01023 -12.75578 -11.88539 -11.63715 -11.25632 -11.18530 -11.11564 -10.72280 -10.70844 -10.34063 -10.01476 -9.50651 -8.81274 -7.84470 -7.75904 -7.54769 -6.75112 -4.69979 1.81699 2.80821 2.92924 3.00314 3.12061 3.17007 3.47167 3.79662 4.37425 4.68251 5.11021 5.28543 5.36821 5.43434 5.84356 5.94857 6.08309 6.19333 6.36850 6.44410 6.52126 6.69861 6.87174 7.28538 7.82719 8.11055 8.29044 8.47520 9.78095 10.02076 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.041388 B = 0.009684 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.363702 B = 2890.700639 C = 3522.972565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.066 3.934 3 Si 0.923 3.077 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.381 4.381 8 H 0.097 0.903 9 C 0.225 3.775 10 N -0.497 5.497 11 C 0.050 3.950 12 C -0.356 4.356 13 S -0.056 6.056 14 C -0.013 4.013 15 C -0.104 4.104 16 C -0.154 4.154 17 C 0.426 3.574 18 O -0.449 6.449 19 H 0.285 0.715 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.095 0.905 25 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.219 -6.159 -0.468 6.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.318 5.318 2 C -0.165 4.165 3 Si 0.746 3.254 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.425 4.425 8 H 0.115 0.885 9 C -0.027 4.027 10 N -0.214 5.214 11 C -0.092 4.092 12 C -0.484 4.484 13 S 0.205 5.795 14 C -0.052 4.052 15 C -0.143 4.143 16 C -0.192 4.192 17 C 0.300 3.700 18 O -0.323 6.323 19 H 0.096 0.904 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.113 0.887 25 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.307 -5.534 -0.349 5.696 hybrid contribution -0.452 0.416 -0.040 0.616 sum 0.854 -5.118 -0.388 5.203 Atomic orbital electron populations 1.70006 1.07443 1.29408 1.24902 1.26148 0.95116 1.01242 0.94027 0.86055 0.80248 0.79514 0.79602 1.18964 1.19695 1.18094 1.19114 0.94741 0.87898 1.40700 0.88457 1.24011 0.89025 0.93007 0.96660 1.67221 1.09301 1.17795 1.27124 1.21723 0.94905 0.88843 1.03758 1.24936 0.95620 0.98594 1.29243 1.82884 1.10827 1.07621 1.78128 1.19612 0.95197 0.90438 0.99987 1.21461 0.94309 0.98639 0.99893 1.22160 1.00608 0.93911 1.02550 1.22577 0.86725 0.89329 0.71339 1.90485 1.49719 1.55663 1.36409 0.90364 0.92377 0.92249 0.91261 0.91740 0.88677 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.68 11.85 55.56 0.66 -18.02 15 2 C 0.07 1.61 5.50 -17.28 -0.10 1.52 15 3 Si 0.92 17.68 29.56 -169.99 -5.03 12.65 15 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 6 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 7 C -0.38 -9.79 9.40 -38.12 -0.36 -10.15 15 8 H 0.10 2.26 7.85 -52.49 -0.41 1.85 15 9 C 0.23 6.11 7.04 -17.18 -0.12 5.99 15 10 N -0.50 -14.32 8.70 -8.79 -0.08 -14.40 15 11 C 0.05 1.28 6.89 -83.14 -0.57 0.70 15 12 C -0.36 -8.04 6.34 -33.78 -0.21 -8.25 15 13 S -0.06 -1.29 23.10 -107.50 -2.48 -3.78 15 14 C -0.01 -0.22 6.23 -27.69 -0.17 -0.39 15 15 C -0.10 -1.54 5.85 -26.60 -0.16 -1.70 15 16 C -0.15 -2.51 6.09 -27.31 -0.17 -2.67 15 17 C 0.43 9.74 7.10 -29.44 -0.21 9.53 15 18 O -0.45 -11.63 17.99 5.51 0.10 -11.53 15 19 H 0.28 6.87 8.29 -40.82 -0.34 6.54 15 20 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.07 0.79 8.14 -51.93 -0.42 0.36 15 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.10 1.41 8.14 -51.93 -0.42 0.98 15 25 H 0.08 1.20 8.14 -51.93 -0.42 0.77 15 LS Contribution 237.96 15.07 3.59 3.59 Total: -1.00 -31.10 237.96 -7.39 -38.49 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -2.08 Total: -1.57 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -2.07 Total: -5.43 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.58 Total: -32.42 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.10 Total: -11.53 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.48 Total: -3.78 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.10 -7.39 -38.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083117026.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.878 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds