Wall clock time and date at job start Mon Mar 30 2020 03:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86804 * 119.99940 * 2 1 4 4 H 1.48502 * 109.46804 * 269.99810 * 3 2 1 5 5 H 1.48494 * 109.47420 * 29.99844 * 3 2 1 6 6 H 1.48498 * 109.46957 * 149.99996 * 3 2 1 7 7 C 1.40269 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99417 * 179.97438 * 7 2 1 9 9 C 1.40112 * 120.00334 * 0.02562 * 7 2 1 10 10 N 1.31058 * 125.17897 * 0.02562 * 9 7 2 11 11 C 1.31756 * 116.32944 * 179.97438 * 10 9 7 12 12 C 1.39225 * 114.02178 * 0.08587 * 11 10 9 13 13 S 1.70549 * 109.19812 * 359.89497 * 12 11 10 14 14 C 1.51028 * 123.92017 * 179.83448 * 12 11 10 15 15 C 1.53067 * 109.31983 * 339.75747 * 14 12 11 16 16 C 1.53193 * 110.19923 * 52.54106 * 15 14 12 17 17 C 1.48848 * 125.98316 * 180.37121 * 11 10 9 18 18 O 1.21331 * 122.23681 * 347.65069 * 17 11 10 19 19 H 0.97003 * 119.99771 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.49997 * 99.71220 * 14 12 11 21 21 H 1.08999 * 109.49716 * 219.78002 * 14 12 11 22 22 H 1.08999 * 109.35087 * 172.76516 * 15 14 12 23 23 H 1.09005 * 109.35031 * 292.47158 * 15 14 12 24 24 H 1.09006 * 109.62484 * 54.28543 * 16 15 14 25 25 H 1.08991 * 109.63284 * 174.67367 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5382 1.4402 0.7000 7 6 2.0079 -1.2148 0.0005 8 1 3.0879 -1.2148 0.0001 9 6 1.3073 -2.4282 0.0005 10 7 0.0021 -2.5465 -0.0004 11 6 -0.4733 -3.7753 -0.0008 12 6 0.5081 -4.7627 0.0019 13 16 2.0458 -4.0250 0.0018 14 6 0.2134 -6.2440 0.0057 15 6 -1.2147 -6.4749 0.5059 16 6 -2.2005 -5.6178 -0.2943 17 6 -1.9122 -4.1563 -0.0096 18 8 -2.7959 -3.3523 0.2020 19 1 -0.4850 0.8401 -0.0004 20 1 0.3125 -6.6372 -1.0060 21 1 0.9168 -6.7532 0.6645 22 1 -1.4729 -7.5273 0.3882 23 1 -1.2765 -6.2034 1.5598 24 1 -2.0746 -5.8130 -1.3593 25 1 -3.2209 -5.8585 0.0039 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083117026.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:23 Heat of formation + Delta-G solvation = -42.509131 kcal Electronic energy + Delta-G solvation = -12776.303718 eV Core-core repulsion = 10458.600816 eV Total energy + Delta-G solvation = -2317.702902 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.77643 -38.70729 -36.65427 -35.23314 -30.99002 -29.94921 -27.76186 -24.81425 -22.89205 -22.50898 -19.57422 -18.57579 -18.04512 -17.04581 -16.36261 -16.06460 -15.65219 -15.14261 -14.84300 -14.54006 -14.40104 -13.52591 -13.23508 -12.96130 -12.83682 -12.66181 -12.26556 -12.01021 -11.89145 -11.63839 -11.25815 -10.53554 -9.73507 -9.67036 -9.45044 -8.57552 -6.62826 0.00832 1.08956 1.16735 1.40513 1.55060 1.55817 1.60061 2.16969 2.55162 3.12081 3.24170 3.98712 4.03772 4.12207 4.36516 4.62665 4.75164 4.84099 4.92066 5.03670 5.09285 5.14788 5.33020 5.50404 5.95947 6.23747 6.49735 6.63822 7.91283 8.23701 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.041388 B = 0.009684 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.363702 B = 2890.700639 C = 3522.972565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.021 3.979 3 Si 1.007 2.993 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.243 1.243 7 C -0.414 4.414 8 H 0.113 0.887 9 C 0.184 3.816 10 N -0.547 5.547 11 C -0.009 4.009 12 C -0.327 4.327 13 S -0.026 6.026 14 C -0.019 4.019 15 C -0.097 4.097 16 C -0.140 4.140 17 C 0.417 3.583 18 O -0.499 6.499 19 H 0.288 0.712 20 H 0.085 0.915 21 H 0.079 0.921 22 H 0.123 0.877 23 H 0.054 0.946 24 H 0.118 0.882 25 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.056 -8.300 -0.706 8.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.204 4.204 3 Si 0.825 3.175 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.166 1.166 7 C -0.458 4.458 8 H 0.131 0.869 9 C -0.069 4.069 10 N -0.266 5.266 11 C -0.149 4.149 12 C -0.455 4.455 13 S 0.236 5.764 14 C -0.059 4.059 15 C -0.135 4.135 16 C -0.177 4.177 17 C 0.294 3.706 18 O -0.376 6.376 19 H 0.099 0.901 20 H 0.103 0.897 21 H 0.098 0.902 22 H 0.141 0.859 23 H 0.073 0.927 24 H 0.136 0.864 25 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.151 -7.738 -0.589 8.053 hybrid contribution -0.659 0.874 0.026 1.095 sum 1.492 -6.864 -0.563 7.046 Atomic orbital electron populations 1.70150 1.09740 1.30596 1.27229 1.27304 0.95715 1.05096 0.92311 0.84838 0.78900 0.73814 0.79968 1.18079 1.19395 1.16586 1.19598 0.95613 0.88523 1.42025 0.86940 1.24509 0.89470 0.95202 0.97715 1.67195 1.10597 1.20222 1.28611 1.22438 0.97336 0.88810 1.06270 1.25889 0.94536 1.01324 1.23721 1.82627 1.10854 1.05626 1.77316 1.19958 0.97407 0.86210 1.02291 1.21511 0.92043 1.01248 0.98740 1.22214 1.02717 0.88599 1.04203 1.23597 0.85137 0.92171 0.69651 1.90449 1.50353 1.57816 1.38988 0.90110 0.89675 0.90222 0.85867 0.92734 0.86400 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -42.67 11.85 21.88 0.26 -42.41 15 2 C 0.02 1.07 5.50 85.36 0.47 1.54 15 3 Si 1.01 36.83 29.56 68.60 2.03 38.86 15 4 H -0.26 -8.95 7.11 99.48 0.71 -8.24 15 5 H -0.27 -9.59 7.11 99.48 0.71 -8.88 15 6 H -0.24 -8.21 7.11 99.48 0.71 -7.50 15 7 C -0.41 -21.95 9.40 23.22 0.22 -21.74 15 8 H 0.11 5.31 7.85 -2.91 -0.02 5.29 15 9 C 0.18 10.35 7.04 85.26 0.60 10.95 15 10 N -0.55 -32.94 8.70 -181.72 -1.58 -34.52 15 11 C -0.01 -0.49 6.89 42.24 0.29 -0.19 15 12 C -0.33 -14.29 6.34 26.03 0.17 -14.12 15 13 S -0.03 -1.19 23.10 -56.49 -1.30 -2.49 15 14 C -0.02 -0.57 6.23 29.97 0.19 -0.39 15 15 C -0.10 -2.40 5.85 30.68 0.18 -2.22 15 16 C -0.14 -4.07 6.09 30.22 0.18 -3.89 15 17 C 0.42 19.13 7.10 28.84 0.20 19.34 15 18 O -0.50 -26.80 17.99 -3.19 -0.06 -26.86 15 19 H 0.29 14.74 8.29 -92.71 -0.77 13.97 15 20 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 21 H 0.08 2.13 8.14 -2.39 -0.02 2.11 15 22 H 0.12 1.90 8.14 -2.39 -0.02 1.88 15 23 H 0.05 1.49 8.14 -2.38 -0.02 1.47 15 24 H 0.12 2.97 8.14 -2.38 -0.02 2.95 15 25 H 0.11 2.71 8.14 -2.39 -0.02 2.69 15 Total: -1.00 -73.28 237.96 3.06 -70.22 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 1.21 Total: 7.92 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 2.50 Total: -10.72 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -1.32 Total: -76.93 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.06 Total: -26.86 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -1.30 Total: -2.49 kcal Total: -73.28 3.06 -70.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083117026.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.711 kcal (2) G-P(sol) polarization free energy of solvation -73.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds