Wall clock time and date at job start Mon Mar 30 2020 03:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30541 * 1 3 3 Si 1.86792 * 120.00335 * 2 1 4 4 H 1.48502 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47028 * 300.00046 * 3 2 1 6 6 H 1.48500 * 109.47318 * 59.99790 * 3 2 1 7 7 C 1.40495 * 119.99481 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99830 * 179.97438 * 7 2 1 9 9 C 1.39463 * 120.00530 * 359.97438 * 7 2 1 10 10 N 1.33212 * 126.36028 * 359.97438 * 9 7 2 11 11 N 1.28674 * 109.14777 * 179.97438 * 10 9 7 12 12 C 1.32308 * 109.44267 * 359.97438 * 11 10 9 13 13 C 1.47287 * 126.16443 * 179.97438 * 12 11 10 14 14 N 1.31963 * 128.79169 * 179.69710 * 13 12 11 15 15 O 1.20867 * 109.25002 * 180.25961 * 14 13 12 16 16 N 1.20823 * 116.20402 * 0.02562 * 15 14 13 17 17 C 1.31219 * 109.58907 * 359.97438 * 16 15 14 18 18 N 1.38784 * 128.73327 * 179.97438 * 17 16 15 19 19 O 1.34876 * 107.67894 * 0.24629 * 12 11 10 20 20 H 0.97001 * 119.99931 * 0.02562 * 1 2 3 21 21 H 0.97001 * 119.99991 * 180.02562 * 18 17 16 22 22 H 0.96994 * 120.00273 * 0.05012 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2395 1.6176 0.0000 4 1 3.6995 1.3462 -0.0006 5 1 1.8807 2.3963 -1.2125 6 1 1.8808 2.3964 1.2125 7 6 2.0078 -1.2168 0.0005 8 1 3.0878 -1.2169 0.0001 9 6 1.3105 -2.4246 0.0016 10 7 -0.0135 -2.5721 0.0027 11 7 -0.2983 -3.8270 0.0030 12 6 0.8210 -4.5326 0.0015 13 6 0.9220 -6.0020 0.0017 14 7 2.0049 -6.7562 -0.0051 15 8 1.6796 -7.9203 -0.0073 16 7 0.4920 -8.1425 -0.0035 17 6 -0.1677 -7.0082 0.0029 18 7 -1.5401 -6.8019 0.0083 19 8 1.8528 -3.6640 0.0058 20 1 -0.4850 0.8401 -0.0004 21 1 -1.8949 -5.8991 0.0124 22 1 -2.1446 -7.5605 0.0084 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083341721.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:35 Heat of formation + Delta-G solvation = 137.791989 kcal Electronic energy + Delta-G solvation = -14418.268142 eV Core-core repulsion = 11594.383220 eV Total energy + Delta-G solvation = -2823.884922 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 223.049 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.97805 -41.86043 -35.87061 -34.51119 -34.08576 -33.91909 -31.58762 -29.88799 -26.96111 -24.24818 -22.59531 -21.65735 -20.91483 -18.28742 -18.27624 -17.62491 -16.79685 -16.12534 -15.73818 -15.45019 -14.77183 -13.95373 -13.61220 -12.17667 -12.12775 -11.86669 -11.62779 -11.42746 -11.16919 -10.96267 -10.67750 -10.66721 -10.24098 -9.84494 -9.18112 -8.61540 -7.83495 -7.17582 -5.17352 1.42876 2.10873 2.71859 2.83809 2.92284 3.13140 3.22864 3.47190 3.67464 4.00251 4.01758 4.71222 4.81196 5.06532 5.36718 5.86861 6.37841 6.65341 6.97348 7.03139 7.24211 7.70829 7.76090 7.90917 8.18118 9.26645 9.73498 10.08142 Molecular weight = 223.05amu Principal moments of inertia in cm(-1) A = 0.069039 B = 0.006797 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.469586 B = 4118.766411 C = 4514.388150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.067 3.933 3 Si 0.940 3.060 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.397 4.397 8 H 0.105 0.895 9 C 0.292 3.708 10 N -0.340 5.340 11 N -0.225 5.225 12 C 0.055 3.945 13 C 0.097 3.903 14 N -0.343 5.343 15 O 0.299 5.701 16 N -0.425 5.425 17 C 0.301 3.699 18 N -0.807 5.807 19 O -0.255 6.255 20 H 0.291 0.709 21 H 0.429 0.571 22 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 -3.695 0.011 3.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.329 5.329 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.432 4.432 8 H 0.123 0.877 9 C 0.113 3.887 10 N -0.201 5.201 11 N -0.086 5.086 12 C -0.150 4.150 13 C -0.069 4.069 14 N -0.069 5.069 15 O 0.097 5.903 16 N -0.174 5.174 17 C 0.038 3.962 18 N -0.364 5.364 19 O -0.144 6.144 20 H 0.103 0.897 21 H 0.263 0.737 22 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.347 -4.196 0.007 4.407 hybrid contribution 0.532 1.190 0.009 1.303 sum -0.815 -3.006 0.017 3.115 Atomic orbital electron populations 1.69867 1.07576 1.30322 1.25160 1.26116 0.95281 1.01608 0.93166 0.85725 0.80472 0.78451 0.79181 1.17764 1.19071 1.19066 1.18490 0.95481 0.85546 1.43665 0.87737 1.23679 0.88881 0.83156 0.92957 1.75883 1.10129 1.03426 1.30614 1.74381 1.23997 1.00655 1.09545 1.21786 0.83378 0.87491 1.22313 1.21562 0.87055 0.90433 1.07890 1.75428 1.22504 0.91274 1.17720 1.84852 1.17740 1.20315 1.67380 1.75135 0.91775 1.20290 1.30237 1.22352 0.88938 0.86932 0.97968 1.41055 0.99054 1.12666 1.83615 1.84858 1.36139 1.16606 1.76808 0.89728 0.73685 0.75991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.40 11.91 55.58 0.66 -16.74 14 2 C 0.07 1.56 5.50 -17.25 -0.09 1.46 14 3 Si 0.94 16.65 29.56 -169.99 -5.03 11.62 14 4 H -0.25 -4.41 7.11 56.52 0.40 -4.01 14 5 H -0.27 -4.60 7.11 56.52 0.40 -4.19 14 6 H -0.27 -4.59 7.11 56.52 0.40 -4.19 14 7 C -0.40 -10.08 9.44 -38.28 -0.36 -10.44 14 8 H 0.10 2.43 7.85 -52.49 -0.41 2.02 14 9 C 0.29 8.09 7.83 -16.50 -0.13 7.97 14 10 N -0.34 -9.56 10.51 30.62 0.32 -9.24 14 11 N -0.23 -5.77 11.74 32.13 0.38 -5.39 14 12 C 0.06 1.39 8.35 -13.67 -0.11 1.27 14 13 C 0.10 2.09 7.72 -79.98 -0.62 1.47 14 14 N -0.34 -7.10 12.30 33.72 0.41 -6.68 14 15 O 0.30 5.47 11.63 27.28 0.32 5.79 14 16 N -0.42 -7.45 12.24 31.65 0.39 -7.06 14 17 C 0.30 5.41 9.10 -152.41 -1.39 4.02 14 18 N -0.81 -11.41 9.09 31.62 0.29 -11.12 14 19 O -0.26 -6.93 10.92 1.31 0.01 -6.91 14 20 H 0.29 6.26 8.29 -40.82 -0.34 5.92 14 21 H 0.43 6.29 8.38 -40.82 -0.34 5.94 14 22 H 0.41 4.32 8.95 -40.82 -0.37 3.95 14 LS Contribution 222.66 15.07 3.36 3.36 Total: -1.00 -29.33 222.66 -1.84 -31.17 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -0.25 Total: 5.45 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -2.70 Total: 5.76 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 2.45 Total: -56.23 kcal Atomic # 8 Polarization: -1.46 SS G_CDS: 0.33 Total: -1.13 kcal Atomic # 14 Polarization: 16.65 SS G_CDS: -5.03 Total: 11.62 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -29.33 -1.84 -31.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083341721.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.966 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds