Wall clock time and date at job start Mon Mar 30 2020 02:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 C 1.52997 * 109.47227 * 120.00779 * 2 1 3 5 5 N 1.46900 * 109.47742 * 64.99781 * 4 2 1 6 6 C 1.46897 * 110.99936 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46565 * 179.97438 * 6 5 4 8 8 C 1.34808 * 125.90889 * 95.02709 * 7 6 5 9 9 C 1.41168 * 107.50873 * 179.97438 * 8 7 6 10 10 C 1.34801 * 107.51034 * 0.02562 * 9 8 7 11 11 N 1.36847 * 108.18420 * 359.75698 * 10 9 8 12 12 C 1.37495 * 125.69268 * 180.23968 * 11 10 9 13 13 H 1.08002 * 119.99675 * 199.52974 * 12 11 10 14 14 C 1.38918 * 120.00276 * 19.52491 * 12 11 10 15 15 N 1.31353 * 119.99516 * 10.33291 * 14 12 11 16 16 Si 1.86800 * 120.00224 * 190.32413 * 14 12 11 17 17 H 1.48499 * 109.47030 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46889 * 120.00391 * 16 14 12 19 19 H 1.48501 * 109.47442 * 240.00430 * 16 14 12 20 20 H 1.09005 * 109.47278 * 299.99500 * 1 2 3 21 21 H 1.08996 * 109.47606 * 59.99293 * 1 2 3 22 22 H 1.09007 * 109.47253 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46698 * 240.00036 * 2 1 3 24 24 H 1.09005 * 109.46809 * 180.02562 * 3 2 1 25 25 H 1.08995 * 109.47580 * 300.00215 * 3 2 1 26 26 H 1.08998 * 109.46881 * 60.00466 * 3 2 1 27 27 H 1.09007 * 109.47000 * 304.99170 * 4 2 1 28 28 H 1.09008 * 109.46849 * 185.00091 * 4 2 1 29 29 H 1.00898 * 110.99467 * 303.95703 * 5 4 2 30 30 H 1.09001 * 109.47367 * 299.99345 * 6 5 4 31 31 H 1.08997 * 109.47224 * 60.00459 * 6 5 4 32 32 H 1.07999 * 126.24376 * 359.95385 * 8 7 6 33 33 H 1.08001 * 126.24501 * 179.97438 * 9 8 7 34 34 H 1.08004 * 125.90956 * 179.97438 * 10 9 8 35 35 H 0.97005 * 119.99717 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6514 -2.1368 1.1902 6 6 2.1248 -2.8625 2.3765 7 6 1.7078 -4.3075 2.2809 8 6 2.4604 -5.3175 1.8007 9 6 1.6935 -6.4992 1.8918 10 6 0.5000 -6.1681 2.4239 11 7 0.5014 -4.8222 2.6714 12 6 -0.5371 -4.1060 3.2183 13 1 -0.5799 -3.0344 3.0913 14 6 -1.5314 -4.7609 3.9342 15 7 -1.3804 -6.0235 4.2633 16 14 -3.0829 -3.8458 4.4291 17 1 -3.0086 -2.4454 3.9407 18 1 -4.2651 -4.5163 3.8306 19 1 -3.2086 -3.8484 5.9087 20 1 -0.3634 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8932 -0.5139 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6054 -0.2619 2.1370 28 1 3.1264 -0.6444 1.2950 29 1 0.6529 -2.2334 1.0822 30 1 3.2117 -2.8005 2.4306 31 1 1.6904 -2.4178 3.2718 32 1 3.4664 -5.2372 1.4161 33 1 2.0056 -7.4879 1.5896 34 1 -0.3150 -6.8480 2.6238 35 1 -2.0744 -6.4807 4.7635 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085584133.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:06 Heat of formation + Delta-G solvation = 11.969503 kcal Electronic energy + Delta-G solvation = -15180.788968 eV Core-core repulsion = 12792.080417 eV Total energy + Delta-G solvation = -2388.708551 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.52660 -38.26976 -35.42078 -34.76587 -31.96392 -30.12680 -28.04210 -26.75462 -26.44646 -24.10083 -21.50624 -21.01135 -20.54824 -18.80375 -17.35836 -16.83388 -16.21547 -15.99917 -15.34564 -15.03809 -14.60297 -14.29500 -14.21719 -13.65048 -13.54117 -13.23702 -13.04659 -12.92034 -12.86170 -12.54473 -12.36696 -12.23187 -12.09928 -11.72718 -11.61551 -11.49313 -11.13941 -9.52373 -9.33334 -8.65123 -8.34145 -6.33753 1.27489 1.34239 1.49602 1.90898 2.12664 2.50676 3.00230 3.28467 3.55512 3.99000 4.04242 4.18970 4.38682 4.49199 4.66143 4.75977 4.76597 4.85071 4.86504 4.93852 5.00397 5.07507 5.09109 5.12488 5.26586 5.36956 5.43858 5.48247 5.73554 5.90273 6.00004 6.17108 6.42299 6.60977 6.77715 7.30272 7.72854 8.44509 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.008941 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.000177 B = 3130.875797 C = 4158.175545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.139 4.139 4 C 0.061 3.939 5 N -0.688 5.688 6 C 0.157 3.843 7 C -0.064 4.064 8 C -0.223 4.223 9 C -0.270 4.270 10 C -0.032 4.032 11 N -0.267 5.267 12 C -0.371 4.371 13 H 0.105 0.895 14 C 0.000 4.000 15 N -0.877 5.877 16 Si 1.007 2.993 17 H -0.254 1.254 18 H -0.268 1.268 19 H -0.270 1.270 20 H 0.051 0.949 21 H 0.069 0.931 22 H 0.040 0.960 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.023 0.977 28 H 0.077 0.923 29 H 0.334 0.666 30 H 0.090 0.910 31 H 0.016 0.984 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.144 0.856 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 11.757 -4.427 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.197 4.197 4 C -0.068 4.068 5 N -0.320 5.320 6 C 0.028 3.972 7 C -0.180 4.180 8 C -0.249 4.249 9 C -0.295 4.295 10 C -0.170 4.170 11 N 0.073 4.927 12 C -0.499 4.499 13 H 0.123 0.877 14 C -0.206 4.206 15 N -0.509 5.509 16 Si 0.828 3.172 17 H -0.178 1.178 18 H -0.193 1.193 19 H -0.195 1.195 20 H 0.071 0.929 21 H 0.088 0.912 22 H 0.059 0.941 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.041 0.959 28 H 0.096 0.904 29 H 0.153 0.847 30 H 0.109 0.891 31 H 0.035 0.965 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.162 0.838 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.906 11.632 -4.529 12.627 hybrid contribution -1.292 -0.070 1.120 1.711 sum 0.613 11.562 -3.409 12.070 Atomic orbital electron populations 1.21866 0.95631 1.01090 1.02155 1.21099 0.95648 0.96705 0.97634 1.21754 1.01337 0.94271 1.02288 1.22130 1.00794 0.86802 0.97039 1.60667 1.19713 1.11596 1.40036 1.19956 0.99642 0.87133 0.90439 1.20431 0.87779 0.96006 1.13739 1.20421 1.00210 0.92389 1.11892 1.20762 0.96159 0.98407 1.14150 1.21910 1.00329 0.86139 1.08605 1.40449 1.09327 1.06411 1.36468 1.20179 1.01954 0.93581 1.34157 0.87730 1.26531 1.02804 0.96894 0.94325 1.70052 1.34682 1.11840 1.34344 0.84687 0.75711 0.78626 0.78200 1.17764 1.19317 1.19535 0.92944 0.91238 0.94138 0.91032 0.91984 0.91495 0.92608 0.95855 0.90446 0.84738 0.89150 0.96540 0.85243 0.85600 0.83843 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 8.96 71.98 0.65 -2.96 16 2 C -0.09 -2.17 3.13 -10.80 -0.03 -2.20 16 3 C -0.14 -2.49 9.19 71.98 0.66 -1.83 16 4 C 0.06 1.71 5.14 86.30 0.44 2.16 16 5 N -0.69 -24.82 6.49 -517.93 -3.36 -28.18 16 6 C 0.16 6.37 5.72 85.56 0.49 6.86 16 7 C -0.06 -3.14 6.37 40.99 0.26 -2.88 16 8 C -0.22 -10.88 10.77 22.20 0.24 -10.64 16 9 C -0.27 -13.82 10.86 22.20 0.24 -13.58 16 10 C -0.03 -1.78 10.05 83.12 0.84 -0.94 16 11 N -0.27 -14.71 2.90 -336.81 -0.98 -15.68 16 12 C -0.37 -19.94 9.65 83.97 0.81 -19.13 16 13 H 0.10 5.30 7.58 -2.91 -0.02 5.28 16 14 C 0.00 0.00 5.37 84.93 0.46 0.46 16 15 N -0.88 -47.93 10.83 21.65 0.23 -47.69 16 16 Si 1.01 39.47 29.56 68.60 2.03 41.50 16 17 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 18 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 19 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 20 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 21 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.04 1.13 6.68 -2.38 -0.02 1.12 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 24 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.33 13.01 6.97 -89.70 -0.63 12.39 16 30 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 31 H 0.02 0.69 7.85 -2.39 -0.02 0.68 16 32 H 0.13 5.54 8.06 -2.91 -0.02 5.52 16 33 H 0.13 5.72 8.06 -2.91 -0.02 5.70 16 34 H 0.14 8.33 6.35 -2.91 -0.02 8.31 16 35 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 Total: -1.00 -60.36 289.47 3.40 -56.96 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: 0.43 Total: 37.79 kcal Atomic # 6 Polarization: -49.75 SS G_CDS: 5.05 Total: -44.70 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -4.10 Total: -91.56 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -60.36 3.40 -56.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085584133.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.933 kcal (2) G-P(sol) polarization free energy of solvation -60.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds