Wall clock time and date at job start Mon Mar 30 2020 03:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00028 * 2 1 4 4 C 1.50706 * 109.47207 * 179.97438 * 3 2 1 5 5 C 1.40895 * 126.29033 * 90.02764 * 4 3 2 6 6 C 1.34844 * 107.41841 * 179.73472 * 5 4 3 7 7 N 1.36346 * 108.21930 * 359.97438 * 6 5 4 8 8 C 1.46500 * 125.64029 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47340 * 89.96864 * 8 7 6 10 10 C 1.53001 * 109.46970 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.46779 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00226 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99487 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99399 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00251 * 0.02562 * 13 11 10 16 16 H 1.48508 * 109.47142 * 89.99671 * 15 13 11 17 17 H 1.48500 * 109.46970 * 209.99533 * 15 13 11 18 18 H 1.48501 * 109.47126 * 329.99687 * 15 13 11 19 19 C 1.34848 * 126.29193 * 269.70999 * 4 3 2 20 20 H 1.08995 * 109.46657 * 60.00246 * 1 2 3 21 21 H 1.09000 * 109.46583 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47031 * 299.99801 * 1 2 3 23 23 H 1.00903 * 111.00457 * 236.04636 * 2 1 3 24 24 H 1.09001 * 109.47013 * 60.00112 * 3 2 1 25 25 H 1.09007 * 109.47412 * 300.00055 * 3 2 1 26 26 H 1.07998 * 126.29072 * 359.70787 * 5 4 3 27 27 H 1.07994 * 125.89572 * 180.02562 * 6 5 4 28 28 H 1.08998 * 109.46917 * 209.97366 * 8 7 6 29 29 H 1.09004 * 109.46684 * 329.96997 * 8 7 6 30 30 H 1.09001 * 109.47283 * 300.00590 * 9 8 7 31 31 H 1.09000 * 109.46682 * 60.00560 * 9 8 7 32 32 H 1.08998 * 109.47145 * 300.00414 * 10 9 8 33 33 H 1.09000 * 109.46919 * 60.00757 * 10 9 8 34 34 H 0.97000 * 119.99781 * 180.02562 * 14 13 11 35 35 H 1.08001 * 125.89182 * 0.22797 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5020 1.3312 0.0006 5 6 4.3361 1.3093 -1.1347 6 6 5.6115 1.2811 -0.6980 7 7 5.5955 1.2853 0.6654 8 6 6.7757 1.2600 1.5330 9 6 7.2210 2.6932 1.8304 10 6 8.4531 2.6667 2.7371 11 6 8.8913 4.0785 3.0304 12 1 8.3454 4.9113 2.6124 13 6 9.9887 4.3068 3.8334 14 7 10.3708 5.5388 4.0899 15 14 10.9326 2.8664 4.5570 16 1 12.0124 2.4619 3.6212 17 1 11.5284 3.2678 5.8566 18 1 10.0072 1.7243 4.7684 19 6 4.2995 1.3156 1.0878 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8307 -0.5261 -0.7814 24 1 1.6460 1.8947 0.8900 25 1 1.6459 1.8948 -0.8900 26 1 4.0132 1.3138 -2.1653 27 1 6.4937 1.2597 -1.3206 28 1 6.5292 0.7549 2.4669 29 1 7.5830 0.7251 1.0327 30 1 7.4674 3.1984 0.8964 31 1 6.4137 3.2280 2.3307 32 1 8.2062 2.1617 3.6709 33 1 9.2606 2.1318 2.2371 34 1 11.1430 5.6995 4.6545 35 1 3.9688 1.3263 2.1159 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085584916.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:47 Heat of formation + Delta-G solvation = 16.189821 kcal Electronic energy + Delta-G solvation = -14350.193584 eV Core-core repulsion = 11961.668040 eV Total energy + Delta-G solvation = -2388.525544 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.02451 -37.21168 -36.29987 -34.50047 -32.37085 -30.27996 -28.87865 -27.04801 -24.82182 -23.89062 -22.13962 -21.01636 -20.42860 -19.01248 -17.85040 -16.59705 -16.25301 -15.95287 -15.77814 -15.13349 -14.85590 -14.66732 -14.50314 -14.00728 -13.66931 -13.51235 -13.35197 -12.85328 -12.68719 -12.58515 -12.40807 -12.16502 -11.83963 -11.78032 -11.57976 -11.40080 -10.78671 -9.47296 -9.21723 -8.92183 -8.31305 -6.37188 1.36937 1.39346 1.45497 1.51026 2.06517 2.18010 2.35529 3.04204 3.63369 3.87147 4.11061 4.22640 4.28367 4.33704 4.43112 4.48666 4.57594 4.68564 4.70744 4.79722 4.87731 4.92710 4.95871 5.06944 5.32311 5.41007 5.47650 5.59518 5.62224 6.09837 6.19730 6.24093 6.43912 6.52416 6.59057 6.71652 7.27652 8.85907 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.056966 B = 0.004345 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.405351 B = 6443.247191 C = 6471.029407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.703 5.703 3 C 0.139 3.861 4 C -0.184 4.184 5 C -0.210 4.210 6 C -0.025 4.025 7 N -0.446 5.446 8 C 0.109 3.891 9 C -0.104 4.104 10 C -0.007 4.007 11 C -0.538 4.538 12 H 0.024 0.976 13 C 0.000 4.000 14 N -0.954 5.954 15 Si 0.957 3.043 16 H -0.265 1.265 17 H -0.286 1.286 18 H -0.239 1.239 19 C -0.009 4.009 20 H 0.026 0.974 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.344 0.656 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.144 0.856 27 H 0.174 0.826 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.267 0.733 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.396 -13.923 -8.602 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.334 5.334 3 C 0.010 3.990 4 C -0.191 4.191 5 C -0.235 4.235 6 C -0.155 4.155 7 N -0.120 5.120 8 C -0.012 4.012 9 C -0.143 4.143 10 C -0.045 4.045 11 C -0.576 4.576 12 H 0.042 0.958 13 C -0.196 4.196 14 N -0.595 5.595 15 Si 0.780 3.220 16 H -0.190 1.190 17 H -0.212 1.212 18 H -0.162 1.162 19 C -0.141 4.141 20 H 0.044 0.956 21 H 0.095 0.905 22 H 0.082 0.918 23 H 0.162 0.838 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.162 0.838 27 H 0.191 0.809 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.941 -13.902 -7.605 21.106 hybrid contribution 0.484 0.625 -0.482 0.926 sum -13.457 -13.277 -8.087 20.561 Atomic orbital electron populations 1.22238 0.87013 1.02464 1.00543 1.60457 1.08226 1.14158 1.50525 1.20119 0.89020 0.89505 1.00323 1.19469 0.94965 1.11964 0.92745 1.20951 0.92141 1.11687 0.98697 1.22191 0.99896 1.10220 0.83190 1.44359 1.06244 1.54970 1.06456 1.22035 0.86294 0.97756 0.95122 1.21640 0.97929 0.95302 0.99402 1.19457 0.94343 0.94925 0.95812 1.21482 1.12836 0.93016 1.30310 0.95752 1.26128 0.98227 0.98934 0.96336 1.70087 1.27510 1.22406 1.39469 0.85558 0.79113 0.79599 0.77758 1.18959 1.21228 1.16206 1.21896 0.82703 1.09695 0.99815 0.95576 0.90532 0.91845 0.83808 0.91157 0.94510 0.83840 0.80902 0.88215 0.87784 0.93454 0.93683 0.95281 0.95274 0.92439 0.81926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.70 127.69 1.37 1.78 16 2 N -0.70 -14.19 6.84 -541.23 -3.70 -17.90 16 3 C 0.14 3.09 6.18 85.56 0.53 3.62 16 4 C -0.18 -4.89 5.65 -19.99 -0.11 -5.01 16 5 C -0.21 -5.43 10.81 22.14 0.24 -5.19 16 6 C -0.02 -0.67 11.43 83.21 0.95 0.28 16 7 N -0.45 -12.83 2.75 -524.48 -1.44 -14.27 16 8 C 0.11 3.09 6.09 86.38 0.53 3.62 16 9 C -0.10 -3.93 5.48 30.59 0.17 -3.76 16 10 C -0.01 -0.33 4.04 29.85 0.12 -0.21 16 11 C -0.54 -31.03 9.66 25.60 0.25 -30.79 16 12 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 13 C 0.00 0.01 5.47 84.66 0.46 0.48 16 14 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 15 Si 0.96 43.10 27.47 68.60 1.88 44.98 16 16 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 17 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.24 -9.67 6.54 99.48 0.65 -9.02 16 19 C -0.01 -0.27 11.35 83.21 0.94 0.68 16 20 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 21 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.34 6.52 8.81 -89.69 -0.79 5.73 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 27 H 0.17 3.88 8.06 -2.91 -0.02 3.85 16 28 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.03 1.23 7.20 -2.39 -0.02 1.22 16 33 H 0.03 1.21 7.57 -2.39 -0.02 1.19 16 34 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 35 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -67.07 295.96 2.68 -64.38 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.20 Total: 17.21 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 5.44 Total: -34.50 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -4.85 Total: -92.08 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.88 Total: 44.98 kcal Total: -67.07 2.68 -64.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085584916.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.574 kcal (2) G-P(sol) polarization free energy of solvation -67.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds