Wall clock time and date at job start Mon Mar 30 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 6 6 C 1.50699 * 109.47482 * 174.99860 * 5 2 1 7 7 C 1.34849 * 125.88879 * 84.69302 * 6 5 2 8 8 C 1.40890 * 107.41663 * 179.88758 * 7 6 5 9 9 C 1.34850 * 107.41993 * 0.37628 * 8 7 6 10 10 N 1.36341 * 125.89301 * 265.00025 * 6 5 2 11 11 C 1.46503 * 125.63708 * 359.95689 * 10 6 5 12 12 C 1.53005 * 109.46811 * 84.99886 * 11 10 6 13 13 C 1.50701 * 109.46806 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00228 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99878 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99966 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99921 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46997 * 90.00746 * 17 15 13 19 19 H 1.48502 * 109.47393 * 210.00369 * 17 15 13 20 20 H 1.48497 * 109.47590 * 330.00913 * 17 15 13 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.00896 * 111.00594 * 296.04777 * 4 2 1 25 25 H 1.00900 * 110.99487 * 60.00820 * 4 2 1 26 26 H 1.09001 * 109.47359 * 295.00205 * 5 2 1 27 27 H 1.09002 * 109.46906 * 55.00224 * 5 2 1 28 28 H 1.08000 * 126.29261 * 0.02562 * 7 6 5 29 29 H 1.08003 * 126.29415 * 180.12832 * 8 7 6 30 30 H 1.07995 * 125.89501 * 179.80788 * 9 8 7 31 31 H 1.08998 * 109.47093 * 204.99749 * 11 10 6 32 32 H 1.08994 * 109.46842 * 325.00193 * 11 10 6 33 33 H 1.09002 * 109.46721 * 299.99810 * 12 11 10 34 34 H 1.08998 * 109.47649 * 59.99939 * 12 11 10 35 35 H 0.96999 * 120.00049 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0400 -0.7212 -1.2491 6 6 3.5419 -0.6149 -1.3126 7 6 4.4190 -1.4287 -0.6907 8 6 5.7144 -0.9806 -1.0168 9 6 5.5795 0.0950 -1.8189 10 7 4.2482 0.3243 -2.0040 11 6 3.6720 1.4015 -2.8126 12 6 3.3429 2.5944 -1.9128 13 6 2.7497 3.7023 -2.7445 14 1 2.6207 3.5691 -3.8084 15 6 2.3725 4.8864 -2.1473 16 7 1.8553 5.8534 -2.8731 17 14 2.5963 5.1171 -0.3072 18 1 3.9368 5.6979 -0.0405 19 1 1.5481 6.0344 0.2079 20 1 2.4821 3.8026 0.3741 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.7502 -0.1989 2.0373 25 1 1.6962 -1.6479 1.2228 26 1 1.7517 -1.7715 -1.2055 27 1 1.6055 -0.2617 -2.1369 28 1 4.1737 -2.2707 -0.0604 29 1 6.6445 -1.4159 -0.6824 30 1 6.3866 0.6744 -2.2421 31 1 4.3893 1.7077 -3.5741 32 1 2.7606 1.0469 -3.2937 33 1 2.6256 2.2881 -1.1514 34 1 4.2544 2.9490 -1.4316 35 1 1.5896 6.6863 -2.4529 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085586717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:57 Heat of formation + Delta-G solvation = 29.815790 kcal Electronic energy + Delta-G solvation = -15453.945686 eV Core-core repulsion = 13066.011008 eV Total energy + Delta-G solvation = -2387.934678 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65494 -36.37309 -34.16192 -32.14625 -30.35091 -29.13215 -28.48663 -25.34342 -24.77515 -21.16880 -20.72392 -19.96822 -18.33304 -17.12649 -16.05785 -15.82352 -14.65725 -14.52308 -13.97032 -13.55124 -13.35520 -12.94034 -12.83891 -12.60062 -12.35443 -12.15404 -11.64289 -11.50355 -11.31905 -11.08061 -10.94126 -10.71175 -10.33241 -10.13653 -9.92476 -9.38668 -8.66329 -8.47268 -7.87472 -7.34927 -6.17535 -4.17997 2.91643 3.23741 3.31576 3.36402 3.63708 3.70852 4.34637 4.71941 5.08017 5.16225 5.22313 5.45915 5.55768 5.61145 5.64530 5.78173 5.88867 6.00006 6.10259 6.16082 6.20685 6.25816 6.34132 6.42952 6.88268 6.92488 7.07972 7.16555 7.35254 7.57913 7.63482 7.68178 7.96271 8.09771 8.35191 8.84138 9.43758 10.95077 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.009970 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.526073 B = 2807.830845 C = 3422.168238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.086 3.914 3 H 0.089 0.911 4 N -0.833 5.833 5 C -0.040 4.040 6 C 0.029 3.971 7 C -0.186 4.186 8 C -0.217 4.217 9 C -0.019 4.019 10 N -0.435 5.435 11 C 0.111 3.889 12 C -0.022 4.022 13 C -0.526 4.526 14 H 0.074 0.926 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.265 1.265 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.052 0.948 24 H 0.336 0.664 25 H 0.332 0.668 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.152 0.848 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.025 0.975 34 H 0.017 0.983 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.187 -12.915 5.355 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.025 4.025 3 H 0.107 0.893 4 N -0.362 5.362 5 C -0.078 4.078 6 C -0.083 4.083 7 C -0.210 4.210 8 C -0.242 4.242 9 C -0.150 4.150 10 N -0.109 5.109 11 C -0.009 4.009 12 C -0.060 4.060 13 C -0.565 4.565 14 H 0.093 0.907 15 C -0.129 4.129 16 N -0.536 5.536 17 Si 0.705 3.295 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.189 1.189 21 H 0.070 0.930 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.148 0.852 25 H 0.144 0.856 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.169 0.831 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.035 0.965 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.694 -12.296 4.832 13.230 hybrid contribution -0.885 0.351 1.202 1.534 sum -0.191 -11.945 6.035 13.384 Atomic orbital electron populations 1.22641 0.97879 1.01412 1.02670 1.21516 0.91430 0.99314 0.90259 0.89329 1.58820 1.67505 1.05763 1.04064 1.20072 0.89612 1.00591 0.97530 1.19966 0.93316 0.93882 1.01149 1.20356 0.91911 1.03094 1.05643 1.20701 0.97380 1.00396 1.05743 1.21673 0.85386 1.01610 1.06367 1.44461 1.05700 1.23136 1.37598 1.22015 0.98630 0.86447 0.93818 1.19935 0.97068 0.92961 0.95991 1.20916 1.41705 0.97673 0.96171 0.90744 1.24946 0.94272 0.95642 0.98047 1.69896 1.42182 1.05533 1.35945 0.86808 0.78186 0.78527 0.86000 1.20143 1.21237 1.18928 0.92983 0.91592 0.92846 0.85171 0.85551 0.90815 0.90911 0.85837 0.85873 0.83082 0.90093 0.90348 0.95684 0.96465 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 9.48 37.16 0.35 -2.00 16 2 C 0.09 1.28 3.34 -67.72 -0.23 1.05 16 3 H 0.09 1.65 6.10 -51.93 -0.32 1.34 16 4 N -0.83 -10.83 8.67 -4.67 -0.04 -10.87 16 5 C -0.04 -0.59 5.14 -27.89 -0.14 -0.74 16 6 C 0.03 0.52 5.95 -81.79 -0.49 0.03 16 7 C -0.19 -3.16 10.43 -39.78 -0.41 -3.57 16 8 C -0.22 -3.68 10.86 -39.78 -0.43 -4.11 16 9 C -0.02 -0.34 11.42 -16.75 -0.19 -0.53 16 10 N -0.43 -8.14 2.75 -112.54 -0.31 -8.45 16 11 C 0.11 2.20 5.76 -4.04 -0.02 2.18 16 12 C -0.02 -0.51 4.37 -27.88 -0.12 -0.63 16 13 C -0.53 -14.43 9.66 -34.44 -0.33 -14.76 16 14 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 16 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 17 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.34 3.99 9.07 -39.29 -0.36 3.63 16 25 H 0.33 3.58 9.00 -39.29 -0.35 3.23 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.12 7.03 -51.93 -0.36 0.75 16 28 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.12 1.81 8.06 -52.48 -0.42 1.38 16 30 H 0.15 2.35 8.06 -52.49 -0.42 1.92 16 31 H 0.08 1.54 8.12 -51.93 -0.42 1.11 16 32 H 0.08 1.48 7.13 -51.93 -0.37 1.11 16 33 H 0.03 0.60 5.16 -51.93 -0.27 0.33 16 34 H 0.02 0.42 7.57 -51.93 -0.39 0.02 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 287.69 15.07 4.34 4.34 Total: -1.00 -30.28 287.69 -7.42 -37.69 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.39 Total: 7.67 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -2.12 Total: -21.09 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.42 Total: -45.51 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.28 -7.42 -37.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085586717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.510 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds