Wall clock time and date at job start Mon Mar 30 2020 02:53:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 N 1.46902 * 109.47094 * 119.99508 * 2 1 3
5 5 C 1.52992 * 109.47482 * 239.99783 * 2 1 3
6 6 C 1.50699 * 109.47482 * 174.99860 * 5 2 1
7 7 C 1.34849 * 125.88879 * 84.69302 * 6 5 2
8 8 C 1.40890 * 107.41663 * 179.88758 * 7 6 5
9 9 C 1.34850 * 107.41993 * 0.37628 * 8 7 6
10 10 N 1.36341 * 125.89301 * 265.00025 * 6 5 2
11 11 C 1.46503 * 125.63708 * 359.95689 * 10 6 5
12 12 C 1.53005 * 109.46811 * 84.99886 * 11 10 6
13 13 C 1.50701 * 109.46806 * 180.02562 * 12 11 10
14 14 H 1.07996 * 120.00228 * 359.97438 * 13 12 11
15 15 C 1.37880 * 119.99878 * 180.02562 * 13 12 11
16 16 N 1.31512 * 119.99966 * 179.97438 * 15 13 12
17 17 Si 1.86797 * 119.99921 * 359.97438 * 15 13 12
18 18 H 1.48507 * 109.46997 * 90.00746 * 17 15 13
19 19 H 1.48502 * 109.47393 * 210.00369 * 17 15 13
20 20 H 1.48497 * 109.47590 * 330.00913 * 17 15 13
21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3
23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3
24 24 H 1.00896 * 111.00594 * 296.04777 * 4 2 1
25 25 H 1.00900 * 110.99487 * 60.00820 * 4 2 1
26 26 H 1.09001 * 109.47359 * 295.00205 * 5 2 1
27 27 H 1.09002 * 109.46906 * 55.00224 * 5 2 1
28 28 H 1.08000 * 126.29261 * 0.02562 * 7 6 5
29 29 H 1.08003 * 126.29415 * 180.12832 * 8 7 6
30 30 H 1.07995 * 125.89501 * 179.80788 * 9 8 7
31 31 H 1.08998 * 109.47093 * 204.99749 * 11 10 6
32 32 H 1.08994 * 109.46842 * 325.00193 * 11 10 6
33 33 H 1.09002 * 109.46721 * 299.99810 * 12 11 10
34 34 H 1.08998 * 109.47649 * 59.99939 * 12 11 10
35 35 H 0.96999 * 120.00049 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0196 -0.6924 1.1995
5 6 2.0400 -0.7212 -1.2491
6 6 3.5419 -0.6149 -1.3126
7 6 4.4190 -1.4287 -0.6907
8 6 5.7144 -0.9806 -1.0168
9 6 5.5795 0.0950 -1.8189
10 7 4.2482 0.3243 -2.0040
11 6 3.6720 1.4015 -2.8126
12 6 3.3429 2.5944 -1.9128
13 6 2.7497 3.7023 -2.7445
14 1 2.6207 3.5691 -3.8084
15 6 2.3725 4.8864 -2.1473
16 7 1.8553 5.8534 -2.8731
17 14 2.5963 5.1171 -0.3072
18 1 3.9368 5.6979 -0.0405
19 1 1.5481 6.0344 0.2079
20 1 2.4821 3.8026 0.3741
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3634 0.5139 0.8900
24 1 1.7502 -0.1989 2.0373
25 1 1.6962 -1.6479 1.2228
26 1 1.7517 -1.7715 -1.2055
27 1 1.6055 -0.2617 -2.1369
28 1 4.1737 -2.2707 -0.0604
29 1 6.6445 -1.4159 -0.6824
30 1 6.3866 0.6744 -2.2421
31 1 4.3893 1.7077 -3.5741
32 1 2.7606 1.0469 -3.2937
33 1 2.6256 2.2881 -1.1514
34 1 4.2544 2.9490 -1.4316
35 1 1.5896 6.6863 -2.4529
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000085586717.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:53:57
Heat of formation + Delta-G solvation = 29.815790 kcal
Electronic energy + Delta-G solvation = -15453.945686 eV
Core-core repulsion = 13066.011008 eV
Total energy + Delta-G solvation = -2387.934678 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 222.143 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.65494 -36.37309 -34.16192 -32.14625 -30.35091 -29.13215 -28.48663 -25.34342
-24.77515 -21.16880 -20.72392 -19.96822 -18.33304 -17.12649 -16.05785 -15.82352
-14.65725 -14.52308 -13.97032 -13.55124 -13.35520 -12.94034 -12.83891 -12.60062
-12.35443 -12.15404 -11.64289 -11.50355 -11.31905 -11.08061 -10.94126 -10.71175
-10.33241 -10.13653 -9.92476 -9.38668 -8.66329 -8.47268 -7.87472 -7.34927
-6.17535 -4.17997 2.91643 3.23741 3.31576 3.36402 3.63708 3.70852
4.34637 4.71941 5.08017 5.16225 5.22313 5.45915 5.55768 5.61145
5.64530 5.78173 5.88867 6.00006 6.10259 6.16082 6.20685 6.25816
6.34132 6.42952 6.88268 6.92488 7.07972 7.16555 7.35254 7.57913
7.63482 7.68178 7.96271 8.09771 8.35191 8.84138 9.43758 10.95077
Molecular weight = 222.14amu
Principal moments of inertia in cm(-1)
A = 0.023011 B = 0.009970 C = 0.008180
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1216.526073 B = 2807.830845 C = 3422.168238
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.086 3.914
3 H 0.089 0.911
4 N -0.833 5.833
5 C -0.040 4.040
6 C 0.029 3.971
7 C -0.186 4.186
8 C -0.217 4.217
9 C -0.019 4.019
10 N -0.435 5.435
11 C 0.111 3.889
12 C -0.022 4.022
13 C -0.526 4.526
14 H 0.074 0.926
15 C 0.073 3.927
16 N -0.897 5.897
17 Si 0.878 3.122
18 H -0.276 1.276
19 H -0.286 1.286
20 H -0.265 1.265
21 H 0.051 0.949
22 H 0.065 0.935
23 H 0.052 0.948
24 H 0.336 0.664
25 H 0.332 0.668
26 H 0.073 0.927
27 H 0.072 0.928
28 H 0.124 0.876
29 H 0.123 0.877
30 H 0.152 0.848
31 H 0.081 0.919
32 H 0.078 0.922
33 H 0.025 0.975
34 H 0.017 0.983
35 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.187 -12.915 5.355 13.982
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.246 4.246
2 C -0.025 4.025
3 H 0.107 0.893
4 N -0.362 5.362
5 C -0.078 4.078
6 C -0.083 4.083
7 C -0.210 4.210
8 C -0.242 4.242
9 C -0.150 4.150
10 N -0.109 5.109
11 C -0.009 4.009
12 C -0.060 4.060
13 C -0.565 4.565
14 H 0.093 0.907
15 C -0.129 4.129
16 N -0.536 5.536
17 Si 0.705 3.295
18 H -0.201 1.201
19 H -0.212 1.212
20 H -0.189 1.189
21 H 0.070 0.930
22 H 0.084 0.916
23 H 0.072 0.928
24 H 0.148 0.852
25 H 0.144 0.856
26 H 0.092 0.908
27 H 0.091 0.909
28 H 0.142 0.858
29 H 0.141 0.859
30 H 0.169 0.831
31 H 0.099 0.901
32 H 0.097 0.903
33 H 0.043 0.957
34 H 0.035 0.965
35 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 0.694 -12.296 4.832 13.230
hybrid contribution -0.885 0.351 1.202 1.534
sum -0.191 -11.945 6.035 13.384
Atomic orbital electron populations
1.22641 0.97879 1.01412 1.02670 1.21516 0.91430 0.99314 0.90259
0.89329 1.58820 1.67505 1.05763 1.04064 1.20072 0.89612 1.00591
0.97530 1.19966 0.93316 0.93882 1.01149 1.20356 0.91911 1.03094
1.05643 1.20701 0.97380 1.00396 1.05743 1.21673 0.85386 1.01610
1.06367 1.44461 1.05700 1.23136 1.37598 1.22015 0.98630 0.86447
0.93818 1.19935 0.97068 0.92961 0.95991 1.20916 1.41705 0.97673
0.96171 0.90744 1.24946 0.94272 0.95642 0.98047 1.69896 1.42182
1.05533 1.35945 0.86808 0.78186 0.78527 0.86000 1.20143 1.21237
1.18928 0.92983 0.91592 0.92846 0.85171 0.85551 0.90815 0.90911
0.85837 0.85873 0.83082 0.90093 0.90348 0.95684 0.96465 0.92506
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.35 9.48 37.16 0.35 -2.00 16
2 C 0.09 1.28 3.34 -67.72 -0.23 1.05 16
3 H 0.09 1.65 6.10 -51.93 -0.32 1.34 16
4 N -0.83 -10.83 8.67 -4.67 -0.04 -10.87 16
5 C -0.04 -0.59 5.14 -27.89 -0.14 -0.74 16
6 C 0.03 0.52 5.95 -81.79 -0.49 0.03 16
7 C -0.19 -3.16 10.43 -39.78 -0.41 -3.57 16
8 C -0.22 -3.68 10.86 -39.78 -0.43 -4.11 16
9 C -0.02 -0.34 11.42 -16.75 -0.19 -0.53 16
10 N -0.43 -8.14 2.75 -112.54 -0.31 -8.45 16
11 C 0.11 2.20 5.76 -4.04 -0.02 2.18 16
12 C -0.02 -0.51 4.37 -27.88 -0.12 -0.63 16
13 C -0.53 -14.43 9.66 -34.44 -0.33 -14.76 16
14 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16
15 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16
16 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16
17 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16
18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
20 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16
21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
22 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
24 H 0.34 3.99 9.07 -39.29 -0.36 3.63 16
25 H 0.33 3.58 9.00 -39.29 -0.35 3.23 16
26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
27 H 0.07 1.12 7.03 -51.93 -0.36 0.75 16
28 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16
29 H 0.12 1.81 8.06 -52.48 -0.42 1.38 16
30 H 0.15 2.35 8.06 -52.49 -0.42 1.92 16
31 H 0.08 1.54 8.12 -51.93 -0.42 1.11 16
32 H 0.08 1.48 7.13 -51.93 -0.37 1.11 16
33 H 0.03 0.60 5.16 -51.93 -0.27 0.33 16
34 H 0.02 0.42 7.57 -51.93 -0.39 0.02 16
35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16
LS Contribution 287.69 15.07 4.34 4.34
Total: -1.00 -30.28 287.69 -7.42 -37.69
By element:
Atomic # 1 Polarization: 13.06 SS G_CDS: -5.39 Total: 7.67 kcal
Atomic # 6 Polarization: -18.98 SS G_CDS: -2.12 Total: -21.09 kcal
Atomic # 7 Polarization: -45.94 SS G_CDS: 0.42 Total: -45.51 kcal
Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal
Total LS contribution 4.34 Total: 4.34 kcal
Total: -30.28 -7.42 -37.69 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000085586717.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.510 kcal
(2) G-P(sol) polarization free energy of solvation -30.277 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.233 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.816 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds