Wall clock time and date at job start Mon Mar 30 2020 02:53:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 N 1.46902 * 109.47094 * 119.99508 * 2 1 3
5 5 C 1.52992 * 109.47482 * 239.99783 * 2 1 3
6 6 C 1.50699 * 109.47482 * 174.99860 * 5 2 1
7 7 C 1.34849 * 125.88879 * 84.69302 * 6 5 2
8 8 C 1.40890 * 107.41663 * 179.88758 * 7 6 5
9 9 C 1.34850 * 107.41993 * 0.37628 * 8 7 6
10 10 N 1.36341 * 125.89301 * 265.00025 * 6 5 2
11 11 C 1.46503 * 125.63708 * 359.95689 * 10 6 5
12 12 C 1.53005 * 109.46811 * 84.99886 * 11 10 6
13 13 C 1.50701 * 109.46806 * 180.02562 * 12 11 10
14 14 H 1.07996 * 120.00228 * 359.97438 * 13 12 11
15 15 C 1.37880 * 119.99878 * 180.02562 * 13 12 11
16 16 N 1.31512 * 119.99966 * 179.97438 * 15 13 12
17 17 Si 1.86797 * 119.99921 * 359.97438 * 15 13 12
18 18 H 1.48507 * 109.46997 * 90.00746 * 17 15 13
19 19 H 1.48502 * 109.47393 * 210.00369 * 17 15 13
20 20 H 1.48497 * 109.47590 * 330.00913 * 17 15 13
21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3
23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3
24 24 H 1.00896 * 111.00594 * 296.04777 * 4 2 1
25 25 H 1.00900 * 110.99487 * 60.00820 * 4 2 1
26 26 H 1.09001 * 109.47359 * 295.00205 * 5 2 1
27 27 H 1.09002 * 109.46906 * 55.00224 * 5 2 1
28 28 H 1.08000 * 126.29261 * 0.02562 * 7 6 5
29 29 H 1.08003 * 126.29415 * 180.12832 * 8 7 6
30 30 H 1.07995 * 125.89501 * 179.80788 * 9 8 7
31 31 H 1.08998 * 109.47093 * 204.99749 * 11 10 6
32 32 H 1.08994 * 109.46842 * 325.00193 * 11 10 6
33 33 H 1.09002 * 109.46721 * 299.99810 * 12 11 10
34 34 H 1.08998 * 109.47649 * 59.99939 * 12 11 10
35 35 H 0.96999 * 120.00049 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0196 -0.6924 1.1995
5 6 2.0400 -0.7212 -1.2491
6 6 3.5419 -0.6149 -1.3126
7 6 4.4190 -1.4287 -0.6907
8 6 5.7144 -0.9806 -1.0168
9 6 5.5795 0.0950 -1.8189
10 7 4.2482 0.3243 -2.0040
11 6 3.6720 1.4015 -2.8126
12 6 3.3429 2.5944 -1.9128
13 6 2.7497 3.7023 -2.7445
14 1 2.6207 3.5691 -3.8084
15 6 2.3725 4.8864 -2.1473
16 7 1.8553 5.8534 -2.8731
17 14 2.5963 5.1171 -0.3072
18 1 3.9368 5.6979 -0.0405
19 1 1.5481 6.0344 0.2079
20 1 2.4821 3.8026 0.3741
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3634 0.5139 0.8900
24 1 1.7502 -0.1989 2.0373
25 1 1.6962 -1.6479 1.2228
26 1 1.7517 -1.7715 -1.2055
27 1 1.6055 -0.2617 -2.1369
28 1 4.1737 -2.2707 -0.0604
29 1 6.6445 -1.4159 -0.6824
30 1 6.3866 0.6744 -2.2421
31 1 4.3893 1.7077 -3.5741
32 1 2.7606 1.0469 -3.2937
33 1 2.6256 2.2881 -1.1514
34 1 4.2544 2.9490 -1.4316
35 1 1.5896 6.6863 -2.4529
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000085586717.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:53:56
Heat of formation + Delta-G solvation = 10.805537 kcal
Electronic energy + Delta-G solvation = -15454.770032 eV
Core-core repulsion = 13066.011008 eV
Total energy + Delta-G solvation = -2388.759024 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 222.143 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-42.00353 -37.48669 -36.01216 -34.07718 -31.53859 -30.88321 -29.54588 -26.59236
-26.54919 -23.01411 -21.90649 -21.29887 -19.78484 -19.02409 -17.53514 -16.99773
-16.52299 -15.84457 -15.48405 -15.05616 -14.72917 -14.58933 -14.26556 -13.92351
-13.75869 -13.40066 -13.11536 -13.01486 -12.82290 -12.49917 -12.20874 -12.16553
-12.02668 -11.86473 -11.75764 -11.47607 -10.84051 -9.49717 -9.26888 -8.67048
-8.37423 -6.42111 1.28416 1.30718 1.41801 1.56135 2.27478 2.29243
2.34223 2.97841 3.67623 3.92662 4.00374 4.11227 4.27054 4.36619
4.42135 4.52928 4.57939 4.66014 4.82382 4.89248 4.94040 4.94727
5.14212 5.19207 5.22136 5.34907 5.51090 5.61105 5.64093 6.14296
6.33343 6.39256 6.61756 6.62837 6.71745 6.75887 7.23089 8.78372
Molecular weight = 222.14amu
Principal moments of inertia in cm(-1)
A = 0.023011 B = 0.009970 C = 0.008180
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1216.526073 B = 2807.830845 C = 3422.168238
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.092 3.908
3 H 0.046 0.954
4 N -0.837 5.837
5 C -0.039 4.039
6 C 0.016 3.984
7 C -0.190 4.190
8 C -0.218 4.218
9 C -0.040 4.040
10 N -0.448 5.448
11 C 0.123 3.877
12 C -0.011 4.011
13 C -0.530 4.530
14 H 0.045 0.955
15 C 0.019 3.981
16 N -0.941 5.941
17 Si 0.940 3.060
18 H -0.271 1.271
19 H -0.279 1.279
20 H -0.256 1.256
21 H 0.076 0.924
22 H 0.052 0.948
23 H 0.057 0.943
24 H 0.343 0.657
25 H 0.348 0.652
26 H 0.099 0.901
27 H 0.063 0.937
28 H 0.141 0.859
29 H 0.145 0.855
30 H 0.166 0.834
31 H 0.085 0.915
32 H 0.082 0.918
33 H 0.024 0.976
34 H 0.009 0.991
35 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.400 -14.603 6.980 16.191
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C -0.020 4.020
3 H 0.064 0.936
4 N -0.368 5.368
5 C -0.078 4.078
6 C -0.095 4.095
7 C -0.214 4.214
8 C -0.243 4.243
9 C -0.170 4.170
10 N -0.123 5.123
11 C 0.002 3.998
12 C -0.049 4.049
13 C -0.568 4.568
14 H 0.064 0.936
15 C -0.180 4.180
16 N -0.581 5.581
17 Si 0.765 3.235
18 H -0.196 1.196
19 H -0.205 1.205
20 H -0.180 1.180
21 H 0.095 0.905
22 H 0.071 0.929
23 H 0.076 0.924
24 H 0.156 0.844
25 H 0.162 0.838
26 H 0.117 0.883
27 H 0.082 0.918
28 H 0.159 0.841
29 H 0.163 0.837
30 H 0.183 0.817
31 H 0.103 0.897
32 H 0.101 0.899
33 H 0.042 0.958
34 H 0.028 0.972
35 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 0.916 -14.016 6.467 15.463
hybrid contribution -0.929 0.818 0.654 1.400
sum -0.013 -13.198 7.121 14.997
Atomic orbital electron populations
1.22569 0.96230 1.02912 1.02256 1.21289 0.92643 0.97086 0.90964
0.93556 1.58740 1.67728 1.06664 1.03654 1.20153 0.88216 1.02101
0.97292 1.20453 0.94568 0.93612 1.00897 1.20636 0.91843 1.03395
1.05558 1.21058 0.98394 0.99909 1.04947 1.22097 0.85395 1.02458
1.07059 1.44438 1.06322 1.23229 1.38295 1.21694 0.99150 0.85780
0.93195 1.19759 0.96135 0.93155 0.95863 1.21190 1.41244 0.98949
0.95410 0.93627 1.25773 0.94119 0.95444 1.02635 1.70019 1.43746
1.06294 1.38018 0.85808 0.78367 0.78830 0.80536 1.19586 1.20470
1.18027 0.90499 0.92890 0.92400 0.84425 0.83838 0.88255 0.91821
0.84112 0.83689 0.81712 0.89686 0.89941 0.95809 0.97233 0.92247
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.20 9.48 71.98 0.68 -3.52 16
2 C 0.09 2.58 3.34 44.91 0.15 2.73 16
3 H 0.05 1.70 6.10 -2.39 -0.01 1.69 16
4 N -0.84 -19.70 8.67 -168.69 -1.46 -21.16 16
5 C -0.04 -1.11 5.14 29.85 0.15 -0.96 16
6 C 0.02 0.54 5.95 41.08 0.24 0.79 16
7 C -0.19 -5.98 10.43 22.14 0.23 -5.74 16
8 C -0.22 -6.86 10.86 22.14 0.24 -6.62 16
9 C -0.04 -1.35 11.42 83.21 0.95 -0.40 16
10 N -0.45 -16.26 2.75 -509.97 -1.40 -17.66 16
11 C 0.12 4.84 5.76 86.38 0.50 5.33 16
12 C -0.01 -0.52 4.37 29.85 0.13 -0.39 16
13 C -0.53 -29.55 9.66 25.60 0.25 -29.30 16
14 H 0.05 2.74 7.99 -2.91 -0.02 2.72 16
15 C 0.02 1.07 5.47 84.66 0.46 1.54 16
16 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16
17 Si 0.94 44.56 27.47 68.60 1.88 46.44 16
18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16
19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16
20 H -0.26 -11.69 6.54 99.48 0.65 -11.04 16
21 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
22 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16
23 H 0.06 1.28 8.14 -2.38 -0.02 1.27 16
24 H 0.34 7.34 9.07 -89.70 -0.81 6.53 16
25 H 0.35 6.36 9.00 -89.69 -0.81 5.56 16
26 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16
27 H 0.06 1.90 7.03 -2.39 -0.02 1.88 16
28 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16
29 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16
30 H 0.17 4.89 8.06 -2.91 -0.02 4.86 16
31 H 0.08 3.22 8.12 -2.39 -0.02 3.20 16
32 H 0.08 3.13 7.13 -2.39 -0.02 3.12 16
33 H 0.02 1.13 5.16 -2.39 -0.01 1.12 16
34 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16
35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16
Total: -1.00 -64.33 287.69 2.72 -61.62
By element:
Atomic # 1 Polarization: 25.15 SS G_CDS: -0.60 Total: 24.55 kcal
Atomic # 6 Polarization: -40.53 SS G_CDS: 3.99 Total: -36.54 kcal
Atomic # 7 Polarization: -93.50 SS G_CDS: -2.56 Total: -96.07 kcal
Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal
Total: -64.33 2.72 -61.62 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000085586717.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.421 kcal
(2) G-P(sol) polarization free energy of solvation -64.332 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.089 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.616 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.806 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds