Wall clock time and date at job start Mon Mar 30 2020 02:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 6 6 C 1.50699 * 109.47482 * 174.99860 * 5 2 1 7 7 C 1.34849 * 125.88879 * 84.69302 * 6 5 2 8 8 C 1.40890 * 107.41663 * 179.88758 * 7 6 5 9 9 C 1.34850 * 107.41993 * 0.37628 * 8 7 6 10 10 N 1.36341 * 125.89301 * 265.00025 * 6 5 2 11 11 C 1.46503 * 125.63708 * 359.95689 * 10 6 5 12 12 C 1.53005 * 109.46811 * 84.99886 * 11 10 6 13 13 C 1.50701 * 109.46806 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00228 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99878 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99966 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99921 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46997 * 90.00746 * 17 15 13 19 19 H 1.48502 * 109.47393 * 210.00369 * 17 15 13 20 20 H 1.48497 * 109.47590 * 330.00913 * 17 15 13 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.00896 * 111.00594 * 296.04777 * 4 2 1 25 25 H 1.00900 * 110.99487 * 60.00820 * 4 2 1 26 26 H 1.09001 * 109.47359 * 295.00205 * 5 2 1 27 27 H 1.09002 * 109.46906 * 55.00224 * 5 2 1 28 28 H 1.08000 * 126.29261 * 0.02562 * 7 6 5 29 29 H 1.08003 * 126.29415 * 180.12832 * 8 7 6 30 30 H 1.07995 * 125.89501 * 179.80788 * 9 8 7 31 31 H 1.08998 * 109.47093 * 204.99749 * 11 10 6 32 32 H 1.08994 * 109.46842 * 325.00193 * 11 10 6 33 33 H 1.09002 * 109.46721 * 299.99810 * 12 11 10 34 34 H 1.08998 * 109.47649 * 59.99939 * 12 11 10 35 35 H 0.96999 * 120.00049 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0400 -0.7212 -1.2491 6 6 3.5419 -0.6149 -1.3126 7 6 4.4190 -1.4287 -0.6907 8 6 5.7144 -0.9806 -1.0168 9 6 5.5795 0.0950 -1.8189 10 7 4.2482 0.3243 -2.0040 11 6 3.6720 1.4015 -2.8126 12 6 3.3429 2.5944 -1.9128 13 6 2.7497 3.7023 -2.7445 14 1 2.6207 3.5691 -3.8084 15 6 2.3725 4.8864 -2.1473 16 7 1.8553 5.8534 -2.8731 17 14 2.5963 5.1171 -0.3072 18 1 3.9368 5.6979 -0.0405 19 1 1.5481 6.0344 0.2079 20 1 2.4821 3.8026 0.3741 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.7502 -0.1989 2.0373 25 1 1.6962 -1.6479 1.2228 26 1 1.7517 -1.7715 -1.2055 27 1 1.6055 -0.2617 -2.1369 28 1 4.1737 -2.2707 -0.0604 29 1 6.6445 -1.4159 -0.6824 30 1 6.3866 0.6744 -2.2421 31 1 4.3893 1.7077 -3.5741 32 1 2.7606 1.0469 -3.2937 33 1 2.6256 2.2881 -1.1514 34 1 4.2544 2.9490 -1.4316 35 1 1.5896 6.6863 -2.4529 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085586717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:56 Heat of formation + Delta-G solvation = 10.805537 kcal Electronic energy + Delta-G solvation = -15454.770032 eV Core-core repulsion = 13066.011008 eV Total energy + Delta-G solvation = -2388.759024 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.00353 -37.48669 -36.01216 -34.07718 -31.53859 -30.88321 -29.54588 -26.59236 -26.54919 -23.01411 -21.90649 -21.29887 -19.78484 -19.02409 -17.53514 -16.99773 -16.52299 -15.84457 -15.48405 -15.05616 -14.72917 -14.58933 -14.26556 -13.92351 -13.75869 -13.40066 -13.11536 -13.01486 -12.82290 -12.49917 -12.20874 -12.16553 -12.02668 -11.86473 -11.75764 -11.47607 -10.84051 -9.49717 -9.26888 -8.67048 -8.37423 -6.42111 1.28416 1.30718 1.41801 1.56135 2.27478 2.29243 2.34223 2.97841 3.67623 3.92662 4.00374 4.11227 4.27054 4.36619 4.42135 4.52928 4.57939 4.66014 4.82382 4.89248 4.94040 4.94727 5.14212 5.19207 5.22136 5.34907 5.51090 5.61105 5.64093 6.14296 6.33343 6.39256 6.61756 6.62837 6.71745 6.75887 7.23089 8.78372 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.009970 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.526073 B = 2807.830845 C = 3422.168238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.092 3.908 3 H 0.046 0.954 4 N -0.837 5.837 5 C -0.039 4.039 6 C 0.016 3.984 7 C -0.190 4.190 8 C -0.218 4.218 9 C -0.040 4.040 10 N -0.448 5.448 11 C 0.123 3.877 12 C -0.011 4.011 13 C -0.530 4.530 14 H 0.045 0.955 15 C 0.019 3.981 16 N -0.941 5.941 17 Si 0.940 3.060 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.256 1.256 21 H 0.076 0.924 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.343 0.657 25 H 0.348 0.652 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.166 0.834 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.024 0.976 34 H 0.009 0.991 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 -14.603 6.980 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.020 4.020 3 H 0.064 0.936 4 N -0.368 5.368 5 C -0.078 4.078 6 C -0.095 4.095 7 C -0.214 4.214 8 C -0.243 4.243 9 C -0.170 4.170 10 N -0.123 5.123 11 C 0.002 3.998 12 C -0.049 4.049 13 C -0.568 4.568 14 H 0.064 0.936 15 C -0.180 4.180 16 N -0.581 5.581 17 Si 0.765 3.235 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.180 1.180 21 H 0.095 0.905 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.156 0.844 25 H 0.162 0.838 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.159 0.841 29 H 0.163 0.837 30 H 0.183 0.817 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.042 0.958 34 H 0.028 0.972 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.916 -14.016 6.467 15.463 hybrid contribution -0.929 0.818 0.654 1.400 sum -0.013 -13.198 7.121 14.997 Atomic orbital electron populations 1.22569 0.96230 1.02912 1.02256 1.21289 0.92643 0.97086 0.90964 0.93556 1.58740 1.67728 1.06664 1.03654 1.20153 0.88216 1.02101 0.97292 1.20453 0.94568 0.93612 1.00897 1.20636 0.91843 1.03395 1.05558 1.21058 0.98394 0.99909 1.04947 1.22097 0.85395 1.02458 1.07059 1.44438 1.06322 1.23229 1.38295 1.21694 0.99150 0.85780 0.93195 1.19759 0.96135 0.93155 0.95863 1.21190 1.41244 0.98949 0.95410 0.93627 1.25773 0.94119 0.95444 1.02635 1.70019 1.43746 1.06294 1.38018 0.85808 0.78367 0.78830 0.80536 1.19586 1.20470 1.18027 0.90499 0.92890 0.92400 0.84425 0.83838 0.88255 0.91821 0.84112 0.83689 0.81712 0.89686 0.89941 0.95809 0.97233 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.20 9.48 71.98 0.68 -3.52 16 2 C 0.09 2.58 3.34 44.91 0.15 2.73 16 3 H 0.05 1.70 6.10 -2.39 -0.01 1.69 16 4 N -0.84 -19.70 8.67 -168.69 -1.46 -21.16 16 5 C -0.04 -1.11 5.14 29.85 0.15 -0.96 16 6 C 0.02 0.54 5.95 41.08 0.24 0.79 16 7 C -0.19 -5.98 10.43 22.14 0.23 -5.74 16 8 C -0.22 -6.86 10.86 22.14 0.24 -6.62 16 9 C -0.04 -1.35 11.42 83.21 0.95 -0.40 16 10 N -0.45 -16.26 2.75 -509.97 -1.40 -17.66 16 11 C 0.12 4.84 5.76 86.38 0.50 5.33 16 12 C -0.01 -0.52 4.37 29.85 0.13 -0.39 16 13 C -0.53 -29.55 9.66 25.60 0.25 -29.30 16 14 H 0.05 2.74 7.99 -2.91 -0.02 2.72 16 15 C 0.02 1.07 5.47 84.66 0.46 1.54 16 16 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 17 Si 0.94 44.56 27.47 68.60 1.88 46.44 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.26 -11.69 6.54 99.48 0.65 -11.04 16 21 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.06 1.28 8.14 -2.38 -0.02 1.27 16 24 H 0.34 7.34 9.07 -89.70 -0.81 6.53 16 25 H 0.35 6.36 9.00 -89.69 -0.81 5.56 16 26 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.06 1.90 7.03 -2.39 -0.02 1.88 16 28 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 29 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.17 4.89 8.06 -2.91 -0.02 4.86 16 31 H 0.08 3.22 8.12 -2.39 -0.02 3.20 16 32 H 0.08 3.13 7.13 -2.39 -0.02 3.12 16 33 H 0.02 1.13 5.16 -2.39 -0.01 1.12 16 34 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -64.33 287.69 2.72 -61.62 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -0.60 Total: 24.55 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: 3.99 Total: -36.54 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -2.56 Total: -96.07 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -64.33 2.72 -61.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085586717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.421 kcal (2) G-P(sol) polarization free energy of solvation -64.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds