Wall clock time and date at job start Mon Mar 30 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46997 * 2 1 4 4 N 1.46900 * 109.47310 * 240.00219 * 2 1 3 5 5 C 1.53000 * 109.47147 * 119.99991 * 2 1 3 6 6 C 1.50700 * 109.47174 * 185.00184 * 5 2 1 7 7 C 1.40890 * 126.29136 * 90.02245 * 6 5 2 8 8 C 1.34856 * 107.41842 * 180.02562 * 7 6 5 9 9 N 1.36343 * 108.21378 * 0.02562 * 8 7 6 10 10 C 1.46500 * 125.63153 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47473 * 90.02303 * 10 9 8 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 C 1.34850 * 126.29166 * 270.33770 * 6 5 2 21 21 H 1.09000 * 109.46831 * 60.00342 * 1 2 3 22 22 H 1.08995 * 109.46765 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47155 * 300.00005 * 1 2 3 24 24 H 1.00902 * 110.99573 * 296.04333 * 4 2 1 25 25 H 1.00899 * 111.00032 * 59.99909 * 4 2 1 26 26 H 1.08991 * 109.46893 * 65.00064 * 5 2 1 27 27 H 1.09004 * 109.46810 * 304.99706 * 5 2 1 28 28 H 1.08004 * 126.29267 * 359.97438 * 7 6 5 29 29 H 1.07993 * 125.88867 * 180.02562 * 8 7 6 30 30 H 1.09002 * 109.47129 * 330.02045 * 10 9 8 31 31 H 1.08998 * 109.46845 * 210.02852 * 10 9 8 32 32 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 33 33 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 34 34 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 35 35 H 1.08000 * 125.89321 * 359.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0400 -0.7212 1.2492 6 6 3.5419 -0.6149 1.3127 7 6 4.2797 0.4070 1.9425 8 6 5.5873 0.1274 1.7674 9 7 5.6837 -1.0293 1.0521 10 6 6.9318 -1.6811 0.6475 11 6 7.3676 -2.6670 1.7333 12 6 8.6512 -3.3379 1.3168 13 1 9.1104 -3.0859 0.3724 14 6 9.2397 -4.2726 2.1421 15 7 10.3601 -4.8576 1.7788 16 14 8.4457 -4.7078 3.7759 17 1 7.5022 -5.8381 3.5822 18 1 9.4971 -5.1018 4.7478 19 1 7.7067 -3.5297 4.2966 20 6 4.4268 -1.4771 0.7722 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.7503 -1.6648 -1.1909 25 1 1.6962 -0.2349 -2.0385 26 1 1.7517 -1.7714 1.2055 27 1 1.6054 -0.2616 2.1370 28 1 3.8728 1.2582 2.4681 29 1 6.4151 0.7180 2.1310 30 1 7.7070 -0.9273 0.5088 31 1 6.7749 -2.2172 -0.2884 32 1 6.5925 -3.4207 1.8720 33 1 7.5245 -2.1307 2.6692 34 1 10.7740 -5.5155 2.3592 35 1 4.1820 -2.3695 0.2154 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085587273.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:59 Heat of formation + Delta-G solvation = 28.652213 kcal Electronic energy + Delta-G solvation = -14716.825902 eV Core-core repulsion = 12328.840768 eV Total energy + Delta-G solvation = -2387.985134 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.58465 -36.69719 -34.11406 -32.25162 -30.21555 -28.82650 -28.56504 -26.31189 -24.21357 -21.09391 -20.86468 -19.46930 -18.96017 -17.15983 -16.21215 -15.73131 -14.62777 -14.50546 -14.01703 -13.63650 -13.40939 -13.08191 -12.82489 -12.75665 -12.55542 -12.19959 -12.02724 -11.48570 -11.32220 -11.04587 -11.00061 -10.73393 -10.28925 -10.14120 -9.90862 -9.38270 -8.64147 -8.62011 -7.81209 -7.43555 -6.14965 -4.15683 2.97541 3.26306 3.34011 3.39519 3.50452 3.74079 4.37512 4.58166 4.96276 5.07956 5.18975 5.28839 5.44550 5.62273 5.66212 5.74507 5.80557 5.83423 5.91543 6.09872 6.12206 6.19461 6.26999 6.38590 6.73753 6.94856 7.07224 7.16819 7.24466 7.47376 7.59909 7.62210 7.92875 8.09476 8.37676 8.86632 9.46224 10.97716 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.045457 B = 0.005394 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.824958 B = 5190.157687 C = 5233.682735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.093 3.907 3 H 0.079 0.921 4 N -0.835 5.835 5 C -0.033 4.033 6 C -0.171 4.171 7 C -0.212 4.212 8 C -0.017 4.017 9 N -0.437 5.437 10 C 0.114 3.886 11 C -0.022 4.022 12 C -0.528 4.528 13 H 0.075 0.925 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.265 1.265 20 C 0.013 3.987 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.335 0.665 25 H 0.334 0.666 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.151 0.849 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.018 0.982 33 H 0.022 0.978 34 H 0.265 0.735 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.147 8.818 -2.281 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.019 4.019 3 H 0.097 0.903 4 N -0.364 5.364 5 C -0.071 4.071 6 C -0.178 4.178 7 C -0.237 4.237 8 C -0.148 4.148 9 N -0.109 5.109 10 C -0.007 4.007 11 C -0.060 4.060 12 C -0.566 4.566 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.536 5.536 16 Si 0.707 3.293 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.190 1.190 20 C -0.119 4.119 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.148 0.852 25 H 0.146 0.854 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.169 0.831 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.912 8.696 -2.067 18.251 hybrid contribution -1.260 -0.502 0.659 1.508 sum -17.173 8.195 -1.409 19.080 Atomic orbital electron populations 1.22697 0.98581 1.01660 1.01854 1.21454 0.90595 0.98845 0.90993 0.90332 1.58805 1.67554 1.06260 1.03750 1.19879 0.91743 0.99548 0.95955 1.18983 0.93671 0.98316 1.06782 1.20567 0.92504 1.01751 1.08851 1.21689 0.98036 0.91553 1.03527 1.44503 1.06769 1.19078 1.40588 1.22047 0.82246 0.96562 0.99828 1.19906 0.97333 0.94321 0.94485 1.20925 1.06101 1.22770 1.06793 0.90692 1.24959 0.94573 0.95401 0.98049 1.69900 1.18350 1.27550 1.37809 0.86774 0.79270 0.79340 0.83948 1.20138 1.21169 1.18975 1.21434 0.82941 1.01579 1.05958 0.93104 0.92895 0.92228 0.85219 0.85400 0.92358 0.91667 0.85980 0.83104 0.90108 0.90044 0.96393 0.95951 0.92494 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.58 9.48 37.16 0.35 -1.23 16 2 C 0.09 0.99 3.35 -67.71 -0.23 0.76 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 N -0.84 -8.83 8.88 -4.66 -0.04 -8.87 16 5 C -0.03 -0.41 5.33 -27.88 -0.15 -0.55 16 6 C -0.17 -2.72 5.14 -104.82 -0.54 -3.26 16 7 C -0.21 -3.46 10.81 -39.78 -0.43 -3.89 16 8 C -0.02 -0.29 11.43 -16.75 -0.19 -0.48 16 9 N -0.44 -8.16 2.75 -117.13 -0.32 -8.49 16 10 C 0.11 2.27 6.03 -4.04 -0.02 2.24 16 11 C -0.02 -0.54 4.36 -27.88 -0.12 -0.66 16 12 C -0.53 -14.74 9.66 -34.44 -0.33 -15.07 16 13 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 14 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 16 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 20 C 0.01 0.22 11.25 -16.75 -0.19 0.04 16 21 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.34 3.22 8.98 -39.29 -0.35 2.86 16 25 H 0.33 2.97 9.04 -39.29 -0.36 2.62 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 29 H 0.15 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 33 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.15 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 294.52 15.07 4.44 4.44 Total: -1.00 -30.61 294.52 -7.48 -38.09 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.71 Total: 4.35 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -1.95 Total: -20.11 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.41 Total: -43.89 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.61 -7.48 -38.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085587273.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.738 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds