Wall clock time and date at job start Mon Mar 30 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46997 * 2 1 4 4 N 1.46900 * 109.47310 * 240.00219 * 2 1 3 5 5 C 1.53000 * 109.47147 * 119.99991 * 2 1 3 6 6 C 1.50700 * 109.47174 * 185.00184 * 5 2 1 7 7 C 1.40890 * 126.29136 * 90.02245 * 6 5 2 8 8 C 1.34856 * 107.41842 * 180.02562 * 7 6 5 9 9 N 1.36343 * 108.21378 * 0.02562 * 8 7 6 10 10 C 1.46500 * 125.63153 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47473 * 90.02303 * 10 9 8 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 C 1.34850 * 126.29166 * 270.33770 * 6 5 2 21 21 H 1.09000 * 109.46831 * 60.00342 * 1 2 3 22 22 H 1.08995 * 109.46765 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47155 * 300.00005 * 1 2 3 24 24 H 1.00902 * 110.99573 * 296.04333 * 4 2 1 25 25 H 1.00899 * 111.00032 * 59.99909 * 4 2 1 26 26 H 1.08991 * 109.46893 * 65.00064 * 5 2 1 27 27 H 1.09004 * 109.46810 * 304.99706 * 5 2 1 28 28 H 1.08004 * 126.29267 * 359.97438 * 7 6 5 29 29 H 1.07993 * 125.88867 * 180.02562 * 8 7 6 30 30 H 1.09002 * 109.47129 * 330.02045 * 10 9 8 31 31 H 1.08998 * 109.46845 * 210.02852 * 10 9 8 32 32 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 33 33 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 34 34 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 35 35 H 1.08000 * 125.89321 * 359.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0400 -0.7212 1.2492 6 6 3.5419 -0.6149 1.3127 7 6 4.2797 0.4070 1.9425 8 6 5.5873 0.1274 1.7674 9 7 5.6837 -1.0293 1.0521 10 6 6.9318 -1.6811 0.6475 11 6 7.3676 -2.6670 1.7333 12 6 8.6512 -3.3379 1.3168 13 1 9.1104 -3.0859 0.3724 14 6 9.2397 -4.2726 2.1421 15 7 10.3601 -4.8576 1.7788 16 14 8.4457 -4.7078 3.7759 17 1 7.5022 -5.8381 3.5822 18 1 9.4971 -5.1018 4.7478 19 1 7.7067 -3.5297 4.2966 20 6 4.4268 -1.4771 0.7722 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.7503 -1.6648 -1.1909 25 1 1.6962 -0.2349 -2.0385 26 1 1.7517 -1.7714 1.2055 27 1 1.6054 -0.2616 2.1370 28 1 3.8728 1.2582 2.4681 29 1 6.4151 0.7180 2.1310 30 1 7.7070 -0.9273 0.5088 31 1 6.7749 -2.2172 -0.2884 32 1 6.5925 -3.4207 1.8720 33 1 7.5245 -2.1307 2.6692 34 1 10.7740 -5.5155 2.3592 35 1 4.1820 -2.3695 0.2154 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085587273.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:59 Heat of formation + Delta-G solvation = 9.773376 kcal Electronic energy + Delta-G solvation = -14717.644550 eV Core-core repulsion = 12328.840768 eV Total energy + Delta-G solvation = -2388.803782 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.90581 -37.60451 -35.91498 -34.10749 -31.63790 -30.11485 -29.55662 -27.64540 -25.79132 -22.89182 -21.79292 -20.84619 -20.18252 -19.16367 -17.49095 -16.82858 -16.52251 -15.53502 -15.44077 -15.14342 -14.79144 -14.38626 -14.28143 -13.93449 -13.76975 -13.45776 -13.24352 -12.97308 -12.83321 -12.36999 -12.16500 -11.98017 -11.90829 -11.81127 -11.64501 -11.54603 -10.84163 -9.41257 -9.15201 -8.73483 -8.36573 -6.42364 1.31390 1.33430 1.45031 1.62216 2.26595 2.29715 2.32527 2.98619 3.81744 4.01400 4.16896 4.31445 4.33606 4.40271 4.40959 4.58206 4.65225 4.68932 4.81380 4.91672 5.03126 5.12710 5.19081 5.20797 5.23153 5.39070 5.49010 5.50761 5.77206 6.14696 6.35438 6.46773 6.61052 6.62924 6.72703 6.76908 7.23316 8.79368 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.045457 B = 0.005394 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.824958 B = 5190.157687 C = 5233.682735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.098 3.902 3 H 0.066 0.934 4 N -0.850 5.850 5 C -0.033 4.033 6 C -0.165 4.165 7 C -0.214 4.214 8 C -0.036 4.036 9 N -0.449 5.449 10 C 0.126 3.874 11 C -0.013 4.013 12 C -0.535 4.535 13 H 0.044 0.956 14 C 0.015 3.985 15 N -0.942 5.942 16 Si 0.946 3.054 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.257 1.257 20 C -0.011 4.011 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.341 0.659 25 H 0.343 0.657 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.144 0.856 29 H 0.164 0.836 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.016 0.984 33 H 0.018 0.982 34 H 0.269 0.731 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.381 9.428 -1.386 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.013 4.013 3 H 0.084 0.916 4 N -0.380 5.380 5 C -0.071 4.071 6 C -0.171 4.171 7 C -0.239 4.239 8 C -0.167 4.167 9 N -0.123 5.123 10 C 0.005 3.995 11 C -0.051 4.051 12 C -0.573 4.573 13 H 0.063 0.937 14 C -0.183 4.183 15 N -0.582 5.582 16 Si 0.770 3.230 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.181 1.181 20 C -0.141 4.141 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.154 0.846 25 H 0.156 0.844 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.161 0.839 29 H 0.181 0.819 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.175 9.323 -1.183 20.461 hybrid contribution -0.565 -0.641 0.311 0.909 sum -18.740 8.682 -0.872 20.672 Atomic orbital electron populations 1.22585 0.96570 1.02210 1.02570 1.21316 0.92078 0.97726 0.90202 0.91614 1.58784 1.68133 1.06812 1.04244 1.19978 0.89426 1.00358 0.97386 1.19418 0.95366 0.97260 1.05098 1.20928 0.92183 1.02352 1.08455 1.22101 0.99235 0.91540 1.03783 1.44426 1.06432 1.19729 1.41752 1.21705 0.83363 0.95997 0.98452 1.19743 0.95185 0.94753 0.95429 1.21225 1.07537 1.22891 1.05682 0.93720 1.25851 0.95065 0.95410 1.01959 1.70029 1.20040 1.28604 1.39554 0.85720 0.78548 0.79425 0.79320 1.19147 1.20462 1.18105 1.21741 0.82834 1.02506 1.07038 0.92271 0.92405 0.91665 0.84627 0.84419 0.91819 0.90543 0.83852 0.81892 0.89726 0.89816 0.96561 0.96386 0.92181 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 9.48 71.98 0.68 -1.83 16 2 C 0.10 1.87 3.35 44.92 0.15 2.02 16 3 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 4 N -0.85 -16.45 8.88 -168.67 -1.50 -17.94 16 5 C -0.03 -0.74 5.33 29.85 0.16 -0.58 16 6 C -0.17 -4.92 5.14 -19.99 -0.10 -5.02 16 7 C -0.21 -6.54 10.81 22.14 0.24 -6.30 16 8 C -0.04 -1.22 11.43 83.21 0.95 -0.26 16 9 N -0.45 -16.34 2.75 -524.49 -1.44 -17.78 16 10 C 0.13 5.00 6.03 86.38 0.52 5.52 16 11 C -0.01 -0.61 4.36 29.85 0.13 -0.48 16 12 C -0.53 -30.29 9.66 25.60 0.25 -30.05 16 13 H 0.04 2.72 7.99 -2.91 -0.02 2.70 16 14 C 0.02 0.89 5.47 84.66 0.46 1.36 16 15 N -0.94 -58.18 13.96 21.45 0.30 -57.88 16 16 Si 0.95 44.62 27.47 68.60 1.88 46.51 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.26 -11.69 6.54 99.48 0.65 -11.04 16 20 C -0.01 -0.36 11.25 83.21 0.94 0.57 16 21 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.34 5.92 8.98 -89.69 -0.81 5.11 16 25 H 0.34 5.51 9.04 -89.69 -0.81 4.70 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 29 H 0.16 4.86 8.06 -2.91 -0.02 4.83 16 30 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 33 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 34 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.16 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -64.58 294.52 3.02 -61.57 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -0.61 Total: 20.60 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 4.38 Total: -35.07 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -2.64 Total: -93.60 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.51 kcal Total: -64.58 3.02 -61.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085587273.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.338 kcal (2) G-P(sol) polarization free energy of solvation -64.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds