Wall clock time and date at job start Mon Mar 30 2020 02:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46896 * 2 1 4 4 N 1.46892 * 109.47630 * 120.00593 * 2 1 3 5 5 C 1.50703 * 109.47114 * 240.00944 * 2 1 3 6 6 C 1.34853 * 125.88765 * 275.27369 * 5 2 1 7 7 C 1.40894 * 107.41864 * 180.25086 * 6 5 2 8 8 C 1.34853 * 107.41519 * 359.73797 * 7 6 5 9 9 N 1.36332 * 125.89474 * 95.06825 * 5 2 1 10 10 C 1.46502 * 125.63723 * 0.02562 * 9 5 2 11 11 C 1.53006 * 109.47170 * 85.26309 * 10 9 5 12 12 C 1.52992 * 109.47115 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47243 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99988 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00145 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99780 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99834 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47216 * 90.00183 * 17 15 13 19 19 H 1.48504 * 109.46934 * 209.99858 * 17 15 13 20 20 H 1.48496 * 109.47510 * 329.99746 * 17 15 13 21 21 H 1.09002 * 109.47091 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47129 * 299.99387 * 1 2 3 23 23 H 1.09005 * 109.47375 * 59.99200 * 1 2 3 24 24 H 1.00901 * 111.00151 * 294.14859 * 4 2 1 25 25 H 1.00896 * 111.00146 * 58.09677 * 4 2 1 26 26 H 1.08004 * 126.28957 * 359.97438 * 6 5 2 27 27 H 1.07992 * 126.29439 * 179.73250 * 7 6 5 28 28 H 1.07997 * 125.89326 * 179.97438 * 8 7 6 29 29 H 1.08998 * 109.47118 * 325.26876 * 10 9 5 30 30 H 1.08997 * 109.47203 * 205.26233 * 10 9 5 31 31 H 1.08998 * 109.46637 * 60.00272 * 11 10 9 32 32 H 1.08994 * 109.47159 * 300.00559 * 11 10 9 33 33 H 1.09006 * 109.47185 * 299.99917 * 12 11 10 34 34 H 1.08997 * 109.47593 * 60.00035 * 12 11 10 35 35 H 0.97002 * 119.99874 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0323 -0.7102 -1.2306 6 6 2.2011 -2.0417 -1.3613 7 6 2.6908 -2.2792 -2.6609 8 6 2.7970 -1.0843 -3.2768 9 7 2.3907 -0.1178 -2.4050 10 6 2.3523 1.3202 -2.6823 11 6 3.6484 1.9690 -2.1921 12 6 3.6079 3.4708 -2.4811 13 6 4.8847 4.1098 -1.9988 14 1 5.6488 3.5051 -1.5332 15 6 5.0775 5.4664 -2.1521 16 7 6.1919 6.0238 -1.7317 17 14 3.7562 6.5122 -2.9582 18 1 2.8203 7.0140 -1.9202 19 1 4.3898 7.6627 -3.6511 20 1 3.0081 5.6916 -3.9441 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5140 -0.8899 24 1 1.7770 -0.1830 2.0356 25 1 1.6710 -1.6385 1.2383 26 1 2.0022 -2.7884 -0.6067 27 1 2.9361 -3.2413 -3.0857 28 1 3.1443 -0.9210 -4.2863 29 1 1.5037 1.7675 -2.1646 30 1 2.2490 1.4806 -3.7554 31 1 4.4969 1.5217 -2.7098 32 1 3.7517 1.8085 -1.1190 33 1 3.5044 3.6317 -3.5543 34 1 2.7594 3.9178 -1.9632 35 1 6.3277 6.9782 -1.8398 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085834882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:19 Heat of formation + Delta-G solvation = 30.580067 kcal Electronic energy + Delta-G solvation = -15016.500895 eV Core-core repulsion = 12628.599359 eV Total energy + Delta-G solvation = -2387.901536 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.03976 -35.83395 -34.95644 -32.62766 -30.59933 -29.09527 -27.78954 -26.81780 -23.25569 -22.60485 -20.34528 -20.25972 -18.62522 -17.22172 -16.56850 -15.52565 -14.75617 -14.53125 -14.24112 -14.06212 -13.38509 -13.33352 -12.95474 -12.63639 -12.59051 -12.01028 -11.95920 -11.81974 -11.63537 -11.19790 -10.91226 -10.85319 -10.11269 -9.93313 -9.81088 -9.28293 -8.77947 -8.59642 -8.23150 -7.71112 -6.08976 -4.08033 2.54394 3.25164 3.26732 3.30781 3.33254 3.34966 4.39311 4.59907 4.79348 5.05459 5.16252 5.20755 5.24508 5.41720 5.50830 5.63543 5.70134 5.72203 5.82394 5.90706 6.00519 6.28852 6.43733 6.53493 6.60987 6.72046 7.08309 7.16846 7.27130 7.33227 7.42007 7.58508 7.67944 7.74684 8.48489 8.96197 9.52209 11.04472 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.032895 B = 0.006388 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.990797 B = 4381.962403 C = 4647.881745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.154 3.846 3 H 0.090 0.910 4 N -0.833 5.833 5 C 0.029 3.971 6 C -0.194 4.194 7 C -0.210 4.210 8 C -0.013 4.013 9 N -0.433 5.433 10 C 0.096 3.904 11 C -0.115 4.115 12 C -0.010 4.010 13 C -0.522 4.522 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.266 1.266 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.344 0.656 25 H 0.340 0.660 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.157 0.843 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.017 0.983 34 H 0.012 0.988 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.282 -12.786 0.715 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.042 3.958 3 H 0.108 0.892 4 N -0.363 5.363 5 C -0.084 4.084 6 C -0.219 4.219 7 C -0.235 4.235 8 C -0.144 4.144 9 N -0.107 5.107 10 C -0.025 4.025 11 C -0.153 4.153 12 C -0.048 4.048 13 C -0.560 4.560 14 H 0.090 0.910 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.191 1.191 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.157 0.843 25 H 0.153 0.847 26 H 0.144 0.856 27 H 0.147 0.853 28 H 0.174 0.826 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.031 0.969 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.464 -12.110 0.345 16.680 hybrid contribution -1.505 0.621 -0.222 1.643 sum -12.970 -11.489 0.122 17.327 Atomic orbital electron populations 1.22602 0.96911 1.02204 1.02180 1.19693 0.91604 0.97582 0.86938 0.89243 1.58652 1.67517 1.06408 1.03741 1.19948 1.07748 0.92564 0.88092 1.20410 1.09931 0.93889 0.97668 1.20750 1.09957 0.96871 0.95872 1.21755 1.07962 0.87850 0.96834 1.44204 1.48907 1.06769 1.10869 1.22195 1.01152 0.76919 1.02235 1.21859 0.94263 0.97861 1.01360 1.19521 0.97899 0.90735 0.96636 1.21084 1.01849 0.93448 1.39623 0.90952 1.25034 0.95422 0.97935 0.95049 1.69913 1.25289 1.11615 1.47162 0.86778 0.82225 0.80124 0.80131 1.20267 1.21276 1.19083 0.92318 0.92350 0.92181 0.84257 0.84697 0.85611 0.85314 0.82552 0.90128 0.89630 0.91971 0.91901 0.96468 0.96950 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.45 37.16 0.35 -1.56 16 2 C 0.15 2.02 3.46 -68.87 -0.24 1.78 16 3 H 0.09 1.32 7.22 -51.93 -0.37 0.95 16 4 N -0.83 -9.74 9.06 -5.66 -0.05 -9.79 16 5 C 0.03 0.44 5.94 -81.79 -0.49 -0.04 16 6 C -0.19 -2.85 10.18 -39.78 -0.40 -3.25 16 7 C -0.21 -3.04 10.86 -39.78 -0.43 -3.47 16 8 C -0.01 -0.20 11.43 -16.74 -0.19 -0.39 16 9 N -0.43 -6.81 2.75 -112.54 -0.31 -7.11 16 10 C 0.10 1.51 5.59 -4.04 -0.02 1.49 16 11 C -0.12 -2.27 5.48 -26.73 -0.15 -2.42 16 12 C -0.01 -0.23 4.04 -27.89 -0.11 -0.34 16 13 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 14 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 17 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.34 3.33 9.08 -39.29 -0.36 2.98 16 25 H 0.34 3.41 8.11 -39.29 -0.32 3.09 16 26 H 0.13 1.61 7.52 -52.48 -0.39 1.21 16 27 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 29 H 0.08 1.18 7.76 -51.93 -0.40 0.77 16 30 H 0.09 1.23 8.13 -51.93 -0.42 0.81 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.31 7.79 -51.93 -0.40 0.90 16 33 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 34 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 290.89 15.07 4.38 4.38 Total: -1.00 -31.54 290.89 -7.55 -39.09 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.56 Total: 5.31 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -2.11 Total: -21.56 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.41 Total: -43.94 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.54 -7.55 -39.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085834882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.668 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds