Wall clock time and date at job start Mon Mar 30 2020 02:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46896 * 2 1 4 4 N 1.46892 * 109.47630 * 120.00593 * 2 1 3 5 5 C 1.50703 * 109.47114 * 240.00944 * 2 1 3 6 6 C 1.34853 * 125.88765 * 275.27369 * 5 2 1 7 7 C 1.40894 * 107.41864 * 180.25086 * 6 5 2 8 8 C 1.34853 * 107.41519 * 359.73797 * 7 6 5 9 9 N 1.36332 * 125.89474 * 95.06825 * 5 2 1 10 10 C 1.46502 * 125.63723 * 0.02562 * 9 5 2 11 11 C 1.53006 * 109.47170 * 85.26309 * 10 9 5 12 12 C 1.52992 * 109.47115 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47243 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99988 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00145 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99780 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99834 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47216 * 90.00183 * 17 15 13 19 19 H 1.48504 * 109.46934 * 209.99858 * 17 15 13 20 20 H 1.48496 * 109.47510 * 329.99746 * 17 15 13 21 21 H 1.09002 * 109.47091 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47129 * 299.99387 * 1 2 3 23 23 H 1.09005 * 109.47375 * 59.99200 * 1 2 3 24 24 H 1.00901 * 111.00151 * 294.14859 * 4 2 1 25 25 H 1.00896 * 111.00146 * 58.09677 * 4 2 1 26 26 H 1.08004 * 126.28957 * 359.97438 * 6 5 2 27 27 H 1.07992 * 126.29439 * 179.73250 * 7 6 5 28 28 H 1.07997 * 125.89326 * 179.97438 * 8 7 6 29 29 H 1.08998 * 109.47118 * 325.26876 * 10 9 5 30 30 H 1.08997 * 109.47203 * 205.26233 * 10 9 5 31 31 H 1.08998 * 109.46637 * 60.00272 * 11 10 9 32 32 H 1.08994 * 109.47159 * 300.00559 * 11 10 9 33 33 H 1.09006 * 109.47185 * 299.99917 * 12 11 10 34 34 H 1.08997 * 109.47593 * 60.00035 * 12 11 10 35 35 H 0.97002 * 119.99874 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0323 -0.7102 -1.2306 6 6 2.2011 -2.0417 -1.3613 7 6 2.6908 -2.2792 -2.6609 8 6 2.7970 -1.0843 -3.2768 9 7 2.3907 -0.1178 -2.4050 10 6 2.3523 1.3202 -2.6823 11 6 3.6484 1.9690 -2.1921 12 6 3.6079 3.4708 -2.4811 13 6 4.8847 4.1098 -1.9988 14 1 5.6488 3.5051 -1.5332 15 6 5.0775 5.4664 -2.1521 16 7 6.1919 6.0238 -1.7317 17 14 3.7562 6.5122 -2.9582 18 1 2.8203 7.0140 -1.9202 19 1 4.3898 7.6627 -3.6511 20 1 3.0081 5.6916 -3.9441 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5140 -0.8899 24 1 1.7770 -0.1830 2.0356 25 1 1.6710 -1.6385 1.2383 26 1 2.0022 -2.7884 -0.6067 27 1 2.9361 -3.2413 -3.0857 28 1 3.1443 -0.9210 -4.2863 29 1 1.5037 1.7675 -2.1646 30 1 2.2490 1.4806 -3.7554 31 1 4.4969 1.5217 -2.7098 32 1 3.7517 1.8085 -1.1190 33 1 3.5044 3.6317 -3.5543 34 1 2.7594 3.9178 -1.9632 35 1 6.3277 6.9782 -1.8398 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085834882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:19 Heat of formation + Delta-G solvation = 10.051897 kcal Electronic energy + Delta-G solvation = -15017.391064 eV Core-core repulsion = 12628.599359 eV Total energy + Delta-G solvation = -2388.791705 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.16031 -36.82664 -36.56074 -34.56264 -32.22601 -30.07148 -28.77557 -28.50510 -24.88249 -23.66099 -22.12880 -21.37211 -19.80791 -18.94504 -18.05881 -16.60559 -16.31579 -15.93851 -15.83941 -15.15271 -14.79594 -14.46619 -14.29071 -14.10194 -13.75175 -13.54744 -13.20016 -12.96100 -12.88325 -12.69896 -12.50126 -11.96272 -11.84422 -11.79090 -11.59407 -11.41010 -10.79230 -9.68475 -9.41488 -8.81858 -8.31429 -6.37499 1.35750 1.38320 1.40509 1.49980 2.12674 2.20203 2.34859 3.03748 3.63950 3.82024 3.85996 4.08836 4.22467 4.25078 4.35947 4.39479 4.54635 4.69384 4.76600 4.81526 4.84900 4.92788 4.97564 5.15904 5.39517 5.42379 5.48099 5.52188 5.61278 6.18138 6.23809 6.26172 6.45744 6.56040 6.66275 6.71094 7.27111 8.85883 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.032895 B = 0.006388 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.990797 B = 4381.962403 C = 4647.881745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.155 3.845 3 H 0.068 0.932 4 N -0.843 5.843 5 C 0.014 3.986 6 C -0.205 4.205 7 C -0.218 4.218 8 C -0.029 4.029 9 N -0.444 5.444 10 C 0.107 3.893 11 C -0.102 4.102 12 C -0.005 4.005 13 C -0.539 4.539 14 H 0.022 0.978 15 C 0.002 3.998 16 N -0.953 5.953 17 Si 0.956 3.044 18 H -0.264 1.264 19 H -0.285 1.285 20 H -0.239 1.239 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.355 0.645 25 H 0.350 0.650 26 H 0.141 0.859 27 H 0.148 0.852 28 H 0.175 0.825 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.030 0.970 34 H 0.028 0.972 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.837 -13.117 -0.185 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.042 3.958 3 H 0.086 0.914 4 N -0.376 5.376 5 C -0.099 4.099 6 C -0.229 4.229 7 C -0.242 4.242 8 C -0.159 4.159 9 N -0.119 5.119 10 C -0.014 4.014 11 C -0.141 4.141 12 C -0.043 4.043 13 C -0.577 4.577 14 H 0.041 0.959 15 C -0.195 4.195 16 N -0.594 5.594 17 Si 0.779 3.221 18 H -0.189 1.189 19 H -0.211 1.211 20 H -0.162 1.162 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.074 0.926 24 H 0.169 0.831 25 H 0.164 0.836 26 H 0.159 0.841 27 H 0.165 0.835 28 H 0.192 0.808 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.033 -12.481 -0.546 18.788 hybrid contribution -0.583 0.631 0.138 0.870 sum -14.615 -11.849 -0.408 18.819 Atomic orbital electron populations 1.22503 0.94843 1.02866 1.02705 1.19656 0.93142 0.96215 0.86776 0.91419 1.58600 1.67976 1.07169 1.03839 1.20394 1.07811 0.93116 0.88538 1.20718 1.09785 0.94174 0.98250 1.21099 1.09523 0.97694 0.95919 1.22207 1.07983 0.87941 0.97739 1.44249 1.49615 1.06645 1.11398 1.22007 0.98907 0.77104 1.03426 1.21614 0.96244 0.96208 1.00002 1.19440 0.95338 0.92441 0.97099 1.21456 1.03102 0.93680 1.39412 0.95922 1.26116 0.98180 0.99526 0.95683 1.70088 1.28037 1.12241 1.49017 0.85572 0.78884 0.77989 0.79679 1.18936 1.21119 1.16171 0.91559 0.90835 0.92606 0.83075 0.83581 0.84116 0.83474 0.80752 0.88608 0.87620 0.93721 0.93932 0.95153 0.95400 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 9.45 71.98 0.68 -2.58 16 2 C 0.15 3.87 3.46 44.17 0.15 4.02 16 3 H 0.07 1.98 7.22 -2.38 -0.02 1.96 16 4 N -0.84 -18.75 9.06 -171.81 -1.56 -20.30 16 5 C 0.01 0.40 5.94 41.08 0.24 0.64 16 6 C -0.20 -5.68 10.18 22.14 0.23 -5.45 16 7 C -0.22 -5.94 10.86 22.14 0.24 -5.70 16 8 C -0.03 -0.81 11.43 83.21 0.95 0.14 16 9 N -0.44 -13.29 2.75 -509.95 -1.40 -14.70 16 10 C 0.11 3.16 5.59 86.38 0.48 3.64 16 11 C -0.10 -4.01 5.48 30.59 0.17 -3.84 16 12 C -0.01 -0.24 4.04 29.85 0.12 -0.12 16 13 C -0.54 -31.40 9.66 25.60 0.25 -31.15 16 14 H 0.02 1.48 7.99 -2.91 -0.02 1.46 16 15 C 0.00 0.09 5.47 84.66 0.46 0.55 16 16 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 17 Si 0.96 43.19 27.47 68.60 1.88 45.07 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.24 -9.66 6.54 99.48 0.65 -9.01 16 21 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.35 6.45 9.08 -89.69 -0.81 5.64 16 25 H 0.35 6.45 8.11 -89.70 -0.73 5.73 16 26 H 0.14 3.34 7.52 -2.91 -0.02 3.31 16 27 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 28 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 29 H 0.10 2.55 7.76 -2.39 -0.02 2.53 16 30 H 0.11 2.72 8.13 -2.39 -0.02 2.70 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.81 7.79 -2.39 -0.02 1.79 16 33 H 0.03 1.30 7.20 -2.38 -0.02 1.28 16 34 H 0.03 1.18 7.57 -2.39 -0.02 1.16 16 35 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -69.24 290.89 2.68 -66.56 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -0.53 Total: 23.34 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 3.98 Total: -39.83 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -2.66 Total: -95.14 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.07 kcal Total: -69.24 2.68 -66.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085834882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.617 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds