Wall clock time and date at job start Mon Mar 30 2020 02:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46903 * 110.99686 * 2 1 4 4 H 1.09000 * 109.47233 * 34.99591 * 3 2 1 5 5 C 1.53005 * 109.46808 * 274.99730 * 3 2 1 6 6 C 1.50700 * 109.46951 * 154.99988 * 3 2 1 7 7 C 1.34847 * 125.88788 * 35.20016 * 6 3 2 8 8 C 1.40892 * 107.41378 * 180.28361 * 7 6 3 9 9 C 1.34849 * 107.41885 * 359.56368 * 8 7 6 10 10 N 1.36344 * 125.88866 * 215.22161 * 6 3 2 11 11 C 1.46502 * 125.63449 * 0.02562 * 10 6 3 12 12 C 1.52995 * 109.46884 * 85.56032 * 11 10 6 13 13 C 1.50702 * 109.46835 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00369 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00133 * 179.97438 * 13 12 11 16 16 N 1.31525 * 119.99579 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00251 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47279 * 60.00479 * 17 15 13 19 19 H 1.48509 * 109.47303 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47072 * 300.00049 * 17 15 13 21 21 H 1.09008 * 109.46845 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47317 * 300.00053 * 1 2 3 23 23 H 1.08994 * 109.47374 * 60.00329 * 1 2 3 24 24 H 1.00895 * 110.99518 * 236.04425 * 2 1 3 25 25 H 1.09000 * 109.46949 * 65.17869 * 5 3 2 26 26 H 1.08993 * 109.46787 * 185.16767 * 5 3 2 27 27 H 1.08995 * 109.47156 * 305.17555 * 5 3 2 28 28 H 1.07992 * 126.29566 * 0.02562 * 7 6 3 29 29 H 1.07996 * 126.29418 * 179.69877 * 8 7 6 30 30 H 1.08003 * 125.89831 * 180.15230 * 9 8 7 31 31 H 1.09000 * 109.46861 * 205.55984 * 11 10 6 32 32 H 1.09003 * 109.47233 * 325.55749 * 11 10 6 33 33 H 1.09000 * 109.47332 * 299.99663 * 12 11 10 34 34 H 1.09003 * 109.47417 * 59.99829 * 12 11 10 35 35 H 0.97000 * 119.99801 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3397 2.0124 0.5894 5 6 2.0608 1.8926 -1.4371 6 6 3.3776 1.3790 0.6005 7 6 4.3013 0.4052 0.4704 8 6 5.4434 0.8085 1.1902 9 6 5.1776 2.0177 1.7246 10 7 3.9097 2.3714 1.3692 11 6 3.2308 3.6123 1.7511 12 6 2.3945 3.3697 3.0090 13 6 1.6967 4.6462 3.4022 14 1 1.8354 5.5409 2.8134 15 6 0.8802 4.6717 4.5129 16 7 0.7109 3.5820 5.2296 17 14 0.0147 6.2538 4.9998 18 1 -0.8720 6.6939 3.8928 19 1 -0.7970 6.0184 6.2210 20 1 1.0253 7.3069 5.2732 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 1.8306 -0.5261 -0.7813 25 1 1.0514 1.9740 -1.8403 26 1 2.5359 2.8735 -1.4465 27 1 2.6415 1.2016 -2.0481 28 1 4.1853 -0.5165 -0.0803 29 1 6.3635 0.2525 1.2931 30 1 5.8510 2.6029 2.3333 31 1 3.9726 4.3854 1.9514 32 1 2.5798 3.9351 0.9386 33 1 1.6527 2.5965 2.8087 34 1 3.0455 3.0468 3.8215 35 1 0.1368 3.5999 6.0113 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085835509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:24 Heat of formation + Delta-G solvation = 36.647444 kcal Electronic energy + Delta-G solvation = -15276.243580 eV Core-core repulsion = 12888.605145 eV Total energy + Delta-G solvation = -2387.638435 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65268 -36.52955 -34.09221 -32.08620 -30.71167 -28.68442 -27.47936 -24.85729 -24.69077 -22.26752 -21.33804 -19.75968 -18.35528 -16.86280 -16.08366 -15.07039 -14.72544 -14.57938 -14.10854 -13.74196 -13.31120 -12.83141 -12.54957 -12.36651 -12.19828 -12.06092 -11.80274 -11.55251 -11.37100 -11.22925 -10.99977 -10.72986 -10.63240 -10.11420 -9.83947 -9.34792 -8.47547 -8.25136 -7.83018 -7.35804 -6.11294 -4.17363 2.92263 3.25714 3.30977 3.32387 3.63195 3.69545 4.35732 4.55388 5.10557 5.23959 5.31575 5.43921 5.56330 5.62357 5.65480 5.77179 5.92328 5.97164 6.09466 6.15092 6.18954 6.22148 6.28900 6.55211 6.82575 6.93680 7.19461 7.50175 7.54039 7.57745 7.69626 7.81786 7.99760 8.08360 8.25029 8.88665 9.47608 10.99391 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.025834 B = 0.007902 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.599105 B = 3542.436808 C = 4120.445112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.678 5.678 3 C 0.151 3.849 4 H 0.090 0.910 5 C -0.172 4.172 6 C 0.032 3.968 7 C -0.193 4.193 8 C -0.217 4.217 9 C -0.014 4.014 10 N -0.429 5.429 11 C 0.102 3.898 12 C 0.015 3.985 13 C -0.531 4.531 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.887 5.887 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.019 0.981 24 H 0.338 0.662 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.153 0.847 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.024 0.976 34 H 0.023 0.977 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.804 -4.163 -11.058 12.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.308 5.308 3 C 0.040 3.960 4 H 0.108 0.892 5 C -0.231 4.231 6 C -0.082 4.082 7 C -0.218 4.218 8 C -0.242 4.242 9 C -0.146 4.146 10 N -0.102 5.102 11 C -0.019 4.019 12 C -0.022 4.022 13 C -0.569 4.569 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.525 5.525 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 H 0.084 0.916 22 H 0.088 0.912 23 H 0.037 0.963 24 H 0.156 0.844 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.171 0.829 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.559 -3.971 -10.101 11.151 hybrid contribution -0.651 1.107 -0.404 1.346 sum 1.908 -2.864 -10.505 11.055 Atomic orbital electron populations 1.22232 0.87562 1.01622 1.00670 1.60229 1.07486 1.13272 1.49789 1.19827 0.91723 0.90013 0.94420 0.89163 1.22439 1.01398 1.02218 0.97078 1.19902 0.95605 0.91280 1.01398 1.20344 0.94194 0.99544 1.07716 1.20690 0.99831 0.97256 1.06457 1.21686 0.87613 0.98928 1.06326 1.44410 1.11730 1.16421 1.37620 1.22280 0.96506 0.82643 1.00428 1.19407 0.94572 0.97779 0.90492 1.20996 1.28521 0.95878 1.11536 0.92473 1.25004 0.96463 0.96410 0.96202 1.69976 1.37885 1.27405 1.17257 0.86603 0.79654 0.83435 0.78002 1.20148 1.21124 1.20114 0.91579 0.91172 0.96255 0.84389 0.92662 0.92007 0.92263 0.85848 0.85727 0.82947 0.90520 0.90984 0.95800 0.95882 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.50 60.07 0.63 1.01 16 2 N -0.68 -10.04 6.24 -115.23 -0.72 -10.76 16 3 C 0.15 2.46 2.68 -68.86 -0.18 2.28 16 4 H 0.09 1.70 6.90 -51.93 -0.36 1.35 16 5 C -0.17 -2.29 9.15 37.16 0.34 -1.95 16 6 C 0.03 0.59 5.94 -81.79 -0.49 0.10 16 7 C -0.19 -3.41 10.35 -39.78 -0.41 -3.82 16 8 C -0.22 -3.79 10.86 -39.78 -0.43 -4.23 16 9 C -0.01 -0.25 11.43 -16.75 -0.19 -0.44 16 10 N -0.43 -8.42 2.75 -112.54 -0.31 -8.72 16 11 C 0.10 2.10 5.53 -4.04 -0.02 2.07 16 12 C 0.02 0.39 5.30 -27.88 -0.15 0.24 16 13 C -0.53 -14.52 9.11 -34.44 -0.31 -14.84 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.74 5.46 -17.81 -0.10 1.64 16 16 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 17 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 22 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 23 H 0.02 0.22 7.54 -51.93 -0.39 -0.17 16 24 H 0.34 4.23 8.49 -39.29 -0.33 3.89 16 25 H 0.05 0.66 7.59 -51.93 -0.39 0.26 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.71 8.04 -51.93 -0.42 0.30 16 28 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 29 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 30 H 0.15 2.46 8.06 -52.48 -0.42 2.03 16 31 H 0.08 1.49 8.13 -51.93 -0.42 1.06 16 32 H 0.07 1.40 7.74 -51.93 -0.40 1.00 16 33 H 0.02 0.66 7.83 -51.93 -0.41 0.26 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 294.39 15.07 4.44 4.44 Total: -1.00 -30.26 294.39 -7.81 -38.07 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.62 Total: 4.47 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.32 Total: -17.93 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.29 Total: -45.16 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.26 -7.81 -38.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085835509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.719 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds