Wall clock time and date at job start Mon Mar 30 2020 02:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46903 * 110.99686 * 2 1 4 4 H 1.09000 * 109.47233 * 34.99591 * 3 2 1 5 5 C 1.53005 * 109.46808 * 274.99730 * 3 2 1 6 6 C 1.50700 * 109.46951 * 154.99988 * 3 2 1 7 7 C 1.34847 * 125.88788 * 35.20016 * 6 3 2 8 8 C 1.40892 * 107.41378 * 180.28361 * 7 6 3 9 9 C 1.34849 * 107.41885 * 359.56368 * 8 7 6 10 10 N 1.36344 * 125.88866 * 215.22161 * 6 3 2 11 11 C 1.46502 * 125.63449 * 0.02562 * 10 6 3 12 12 C 1.52995 * 109.46884 * 85.56032 * 11 10 6 13 13 C 1.50702 * 109.46835 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00369 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00133 * 179.97438 * 13 12 11 16 16 N 1.31525 * 119.99579 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00251 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47279 * 60.00479 * 17 15 13 19 19 H 1.48509 * 109.47303 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47072 * 300.00049 * 17 15 13 21 21 H 1.09008 * 109.46845 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47317 * 300.00053 * 1 2 3 23 23 H 1.08994 * 109.47374 * 60.00329 * 1 2 3 24 24 H 1.00895 * 110.99518 * 236.04425 * 2 1 3 25 25 H 1.09000 * 109.46949 * 65.17869 * 5 3 2 26 26 H 1.08993 * 109.46787 * 185.16767 * 5 3 2 27 27 H 1.08995 * 109.47156 * 305.17555 * 5 3 2 28 28 H 1.07992 * 126.29566 * 0.02562 * 7 6 3 29 29 H 1.07996 * 126.29418 * 179.69877 * 8 7 6 30 30 H 1.08003 * 125.89831 * 180.15230 * 9 8 7 31 31 H 1.09000 * 109.46861 * 205.55984 * 11 10 6 32 32 H 1.09003 * 109.47233 * 325.55749 * 11 10 6 33 33 H 1.09000 * 109.47332 * 299.99663 * 12 11 10 34 34 H 1.09003 * 109.47417 * 59.99829 * 12 11 10 35 35 H 0.97000 * 119.99801 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3397 2.0124 0.5894 5 6 2.0608 1.8926 -1.4371 6 6 3.3776 1.3790 0.6005 7 6 4.3013 0.4052 0.4704 8 6 5.4434 0.8085 1.1902 9 6 5.1776 2.0177 1.7246 10 7 3.9097 2.3714 1.3692 11 6 3.2308 3.6123 1.7511 12 6 2.3945 3.3697 3.0090 13 6 1.6967 4.6462 3.4022 14 1 1.8354 5.5409 2.8134 15 6 0.8802 4.6717 4.5129 16 7 0.7109 3.5820 5.2296 17 14 0.0147 6.2538 4.9998 18 1 -0.8720 6.6939 3.8928 19 1 -0.7970 6.0184 6.2210 20 1 1.0253 7.3069 5.2732 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 1.8306 -0.5261 -0.7813 25 1 1.0514 1.9740 -1.8403 26 1 2.5359 2.8735 -1.4465 27 1 2.6415 1.2016 -2.0481 28 1 4.1853 -0.5165 -0.0803 29 1 6.3635 0.2525 1.2931 30 1 5.8510 2.6029 2.3333 31 1 3.9726 4.3854 1.9514 32 1 2.5798 3.9351 0.9386 33 1 1.6527 2.5965 2.8087 34 1 3.0455 3.0468 3.8215 35 1 0.1368 3.5999 6.0113 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085835509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:23 Heat of formation + Delta-G solvation = 18.093616 kcal Electronic energy + Delta-G solvation = -15277.048135 eV Core-core repulsion = 12888.605145 eV Total energy + Delta-G solvation = -2388.442990 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.07340 -37.73233 -36.02275 -33.97312 -31.89674 -30.51574 -28.75493 -26.61959 -25.98310 -23.65034 -23.14007 -21.16342 -19.80987 -18.70345 -17.76385 -16.64672 -16.32311 -15.91704 -15.45144 -15.24617 -14.83056 -14.47919 -14.01566 -13.80304 -13.60643 -13.32830 -13.19823 -12.97871 -12.88526 -12.81044 -12.54581 -12.46664 -11.99128 -11.92893 -11.76388 -11.44427 -10.63735 -9.39808 -9.31429 -8.75603 -8.26520 -6.41310 1.38270 1.41646 1.48007 1.51029 2.21267 2.26687 2.40387 3.06964 3.35573 3.85645 4.01302 4.18298 4.22680 4.40888 4.44599 4.51374 4.60072 4.68792 4.74496 4.81734 4.84678 4.93375 5.02106 5.15081 5.34741 5.37782 5.50748 5.57561 5.69297 5.98429 6.04247 6.33837 6.55670 6.56833 6.64123 6.76587 7.29506 8.85116 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.025834 B = 0.007902 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.599105 B = 3542.436808 C = 4120.445112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.690 5.690 3 C 0.153 3.847 4 H 0.055 0.945 5 C -0.161 4.161 6 C 0.014 3.986 7 C -0.198 4.198 8 C -0.217 4.217 9 C -0.036 4.036 10 N -0.444 5.444 11 C 0.119 3.881 12 C 0.029 3.971 13 C -0.547 4.547 14 H 0.071 0.929 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.970 3.030 18 H -0.264 1.264 19 H -0.285 1.285 20 H -0.264 1.264 21 H 0.087 0.913 22 H 0.039 0.961 23 H 0.037 0.963 24 H 0.354 0.646 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.144 0.856 29 H 0.150 0.850 30 H 0.168 0.832 31 H 0.091 0.909 32 H 0.082 0.918 33 H -0.012 1.012 34 H -0.013 1.013 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 -3.674 -12.440 13.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.322 5.322 3 C 0.042 3.958 4 H 0.073 0.927 5 C -0.220 4.220 6 C -0.099 4.099 7 C -0.222 4.222 8 C -0.242 4.242 9 C -0.166 4.166 10 N -0.119 5.119 11 C -0.002 4.002 12 C -0.009 4.009 13 C -0.585 4.585 14 H 0.090 0.910 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.794 3.206 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.188 1.188 21 H 0.105 0.895 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.173 0.827 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.162 0.838 29 H 0.168 0.832 30 H 0.186 0.814 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.006 0.994 34 H 0.006 0.994 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.740 -3.493 -11.513 12.339 hybrid contribution -0.673 0.854 0.028 1.087 sum 2.068 -2.639 -11.485 11.964 Atomic orbital electron populations 1.22210 0.86691 1.02817 1.00057 1.60151 1.08458 1.12669 1.50956 1.19753 0.89984 0.90465 0.95574 0.92699 1.22336 1.02589 1.02023 0.95089 1.20431 0.96740 0.91286 1.01445 1.20670 0.94002 0.99897 1.07678 1.21075 1.00713 0.96879 1.05486 1.22152 0.87568 0.99884 1.06998 1.44424 1.12361 1.16485 1.38631 1.21913 0.96402 0.83748 0.98179 1.19163 0.93651 0.96286 0.91817 1.21457 1.28469 0.96769 1.11779 0.91036 1.26022 0.97269 1.00111 0.96170 1.70134 1.38909 1.30058 1.17905 0.85425 0.78585 0.78838 0.77768 1.18833 1.21029 1.18834 0.89453 0.94149 0.94423 0.82653 0.91186 0.92678 0.90568 0.83830 0.83188 0.81443 0.89112 0.89979 0.99370 0.99443 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.50 127.69 1.34 2.15 16 2 N -0.69 -19.88 6.24 -518.49 -3.24 -23.12 16 3 C 0.15 4.98 2.68 44.17 0.12 5.10 16 4 H 0.05 2.16 6.90 -2.39 -0.02 2.14 16 5 C -0.16 -4.03 9.15 71.98 0.66 -3.37 16 6 C 0.01 0.51 5.94 41.08 0.24 0.75 16 7 C -0.20 -6.70 10.35 22.14 0.23 -6.47 16 8 C -0.22 -7.23 10.86 22.14 0.24 -6.99 16 9 C -0.04 -1.29 11.43 83.21 0.95 -0.34 16 10 N -0.44 -17.51 2.75 -509.96 -1.40 -18.91 16 11 C 0.12 4.94 5.53 86.38 0.48 5.42 16 12 C 0.03 1.52 5.30 29.85 0.16 1.68 16 13 C -0.55 -30.30 9.11 25.60 0.23 -30.06 16 14 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 15 C 0.00 0.17 5.46 84.65 0.46 0.63 16 16 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 17 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 21 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 22 H 0.04 1.26 8.06 -2.38 -0.02 1.24 16 23 H 0.04 0.82 7.54 -2.39 -0.02 0.80 16 24 H 0.35 8.13 8.49 -89.70 -0.76 7.37 16 25 H 0.07 1.53 7.59 -2.39 -0.02 1.51 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.64 8.04 -2.39 -0.02 1.62 16 28 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 29 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 30 H 0.17 5.29 8.06 -2.91 -0.02 5.27 16 31 H 0.09 3.48 8.13 -2.39 -0.02 3.46 16 32 H 0.08 3.22 7.74 -2.39 -0.02 3.20 16 33 H -0.01 -0.72 7.83 -2.39 -0.02 -0.74 16 34 H -0.01 -0.77 8.14 -2.39 -0.02 -0.78 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -66.07 294.39 3.08 -62.99 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.29 Total: 21.88 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 5.11 Total: -31.50 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -4.35 Total: -98.69 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -66.07 3.08 -62.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085835509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.088 kcal (2) G-P(sol) polarization free energy of solvation -66.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds