Wall clock time and date at job start Mon Mar 30 2020 02:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46725 * 2 1 4 4 N 1.46905 * 109.46803 * 180.02562 * 3 2 1 5 5 C 1.46907 * 110.99564 * 180.02562 * 4 3 2 6 6 H 1.08994 * 109.47368 * 324.99625 * 5 4 3 7 7 C 1.53000 * 109.46894 * 85.00138 * 5 4 3 8 8 C 1.50702 * 109.46824 * 204.99639 * 5 4 3 9 9 C 1.34809 * 125.90830 * 0.06509 * 8 5 4 10 10 C 1.41170 * 107.51026 * 179.97438 * 9 8 5 11 11 C 1.34805 * 107.50514 * 359.97438 * 10 9 8 12 12 N 1.36846 * 125.90830 * 179.74602 * 8 5 4 13 13 C 1.37496 * 125.69212 * 0.03021 * 12 8 5 14 14 H 1.07999 * 119.99923 * 340.03377 * 13 12 8 15 15 C 1.38916 * 119.99836 * 160.03160 * 13 12 8 16 16 N 1.31359 * 120.00396 * 349.80048 * 15 13 12 17 17 Si 1.86802 * 119.99806 * 169.80009 * 15 13 12 18 18 H 1.48504 * 109.47326 * 90.00002 * 17 15 13 19 19 H 1.48501 * 109.47045 * 209.99947 * 17 15 13 20 20 H 1.48495 * 109.47161 * 329.99994 * 17 15 13 21 21 H 1.09001 * 109.47519 * 60.00057 * 1 2 3 22 22 H 1.09002 * 109.46829 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47044 * 299.99679 * 1 2 3 24 24 H 1.09001 * 109.47044 * 240.00320 * 2 1 3 25 25 H 1.08992 * 109.47372 * 119.99898 * 2 1 3 26 26 H 1.09000 * 109.47593 * 60.00534 * 3 2 1 27 27 H 1.09004 * 109.47516 * 299.99933 * 3 2 1 28 28 H 1.00898 * 111.00182 * 56.04412 * 4 3 2 29 29 H 1.09002 * 109.46573 * 176.97794 * 7 5 4 30 30 H 1.08996 * 109.47087 * 296.97592 * 7 5 4 31 31 H 1.08997 * 109.47587 * 56.98296 * 7 5 4 32 32 H 1.08005 * 126.24170 * 359.97438 * 9 8 5 33 33 H 1.08000 * 126.24702 * 179.97438 * 10 9 8 34 34 H 1.08006 * 125.90661 * 180.02562 * 11 10 9 35 35 H 0.96997 * 120.00042 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0353 2.8141 0.0000 6 1 3.3794 3.4553 -0.5888 7 6 4.1012 3.3344 1.4373 8 6 5.4173 2.8220 -0.6010 9 6 6.0808 1.7471 -1.0718 10 6 7.3341 2.1945 -1.5431 11 6 7.3903 3.5266 -1.3436 12 7 6.2132 3.9225 -0.7688 13 6 5.8860 5.2105 -0.4159 14 1 4.8514 5.4847 -0.2721 15 6 6.8863 6.1590 -0.2444 16 7 8.1462 5.7881 -0.2206 17 14 6.4398 7.9622 -0.0477 18 1 6.2450 8.2697 1.3920 19 1 7.5352 8.8054 -0.5902 20 1 5.1842 8.2448 -0.7885 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9564 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 3.8702 0.9166 -0.7822 29 1 4.5417 4.3314 1.4428 30 1 3.0951 3.3793 1.8540 31 1 4.7141 2.6632 2.0389 32 1 5.7195 0.7294 -1.0859 33 1 8.1067 1.5816 -1.9831 34 1 8.2194 4.1706 -1.5972 35 1 8.8446 6.4504 -0.1005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085836468.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:29 Heat of formation + Delta-G solvation = 16.650718 kcal Electronic energy + Delta-G solvation = -15252.558723 eV Core-core repulsion = 12864.053164 eV Total energy + Delta-G solvation = -2388.505558 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.64662 -38.01707 -35.36113 -34.53369 -32.13148 -30.56707 -28.56839 -26.75447 -25.93659 -22.91150 -22.21648 -21.43147 -20.28974 -18.87688 -17.41732 -16.82101 -16.26742 -15.85475 -15.33584 -15.13007 -14.39810 -14.23597 -14.18124 -13.70354 -13.43366 -13.23434 -13.10991 -12.92752 -12.63624 -12.57427 -12.29409 -12.19121 -12.07765 -11.78294 -11.66980 -11.49531 -11.08950 -9.51012 -9.37749 -8.62551 -8.31286 -6.30863 1.30608 1.36455 1.50773 1.94495 2.15920 2.52384 3.01916 3.08154 3.54773 4.05833 4.19428 4.20713 4.42991 4.51448 4.61134 4.71179 4.78357 4.88441 4.94590 5.00593 5.03613 5.08190 5.14607 5.22497 5.34005 5.37380 5.45693 5.46247 5.74200 5.82004 6.00367 6.23365 6.50088 6.63366 6.78516 7.31444 7.73115 8.46948 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.033551 B = 0.007411 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.343650 B = 3777.443779 C = 4429.691964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.057 3.943 4 N -0.680 5.680 5 C 0.183 3.817 6 H 0.028 0.972 7 C -0.126 4.126 8 C -0.068 4.068 9 C -0.228 4.228 10 C -0.270 4.270 11 C -0.033 4.033 12 N -0.266 5.266 13 C -0.370 4.370 14 H 0.109 0.891 15 C 0.001 3.999 16 N -0.878 5.878 17 Si 1.006 2.994 18 H -0.264 1.264 19 H -0.272 1.272 20 H -0.257 1.257 21 H 0.054 0.946 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.024 0.976 28 H 0.344 0.656 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.144 0.856 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.036 -4.272 0.717 11.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.072 4.072 4 N -0.313 5.313 5 C 0.072 3.928 6 H 0.046 0.954 7 C -0.185 4.185 8 C -0.184 4.184 9 C -0.253 4.253 10 C -0.294 4.294 11 C -0.171 4.171 12 N 0.075 4.925 13 C -0.497 4.497 14 H 0.126 0.874 15 C -0.205 4.205 16 N -0.510 5.510 17 Si 0.826 3.174 18 H -0.189 1.189 19 H -0.196 1.196 20 H -0.181 1.181 21 H 0.073 0.927 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.164 0.836 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.872 -3.891 1.523 11.648 hybrid contribution 0.393 1.061 -0.870 1.427 sum -10.479 -2.830 0.654 10.874 Atomic orbital electron populations 1.21702 0.94244 1.02432 1.02007 1.21454 0.96541 0.94925 1.02491 1.22138 0.86601 0.98245 1.00229 1.60575 1.07960 1.12311 1.50446 1.19356 0.88695 0.89581 0.95129 0.95417 1.21674 1.01179 1.00311 0.95287 1.20493 0.97500 0.87193 1.13222 1.20321 0.96261 0.97227 1.11455 1.20767 0.99945 0.94306 1.14393 1.21905 0.92780 0.95417 1.06978 1.40356 1.11258 1.05342 1.35591 1.20191 0.95433 0.84437 1.49619 0.87379 1.26512 0.94326 1.05713 0.93919 1.70046 1.00865 1.36889 1.43202 0.84764 0.78794 0.74555 0.79271 1.18869 1.19639 1.18064 0.92728 0.91437 0.92376 0.92025 0.91449 0.91092 0.95777 0.83568 0.93218 0.91428 0.93704 0.84681 0.85592 0.83901 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 71.98 0.71 -1.75 16 2 C -0.12 -2.47 6.19 30.59 0.19 -2.28 16 3 C 0.06 1.51 5.48 86.30 0.47 1.99 16 4 N -0.68 -22.75 6.15 -495.42 -3.05 -25.79 16 5 C 0.18 7.39 2.71 44.17 0.12 7.51 16 6 H 0.03 1.15 7.80 -2.39 -0.02 1.13 16 7 C -0.13 -4.96 9.30 71.98 0.67 -4.29 16 8 C -0.07 -3.30 6.13 40.99 0.25 -3.05 16 9 C -0.23 -10.75 9.81 22.20 0.22 -10.53 16 10 C -0.27 -13.57 10.86 22.20 0.24 -13.33 16 11 C -0.03 -1.84 10.05 83.12 0.84 -1.01 16 12 N -0.27 -14.61 2.90 -336.80 -0.98 -15.59 16 13 C -0.37 -19.81 8.35 83.97 0.70 -19.11 16 14 H 0.11 5.48 7.11 -2.91 -0.02 5.46 16 15 C 0.00 0.04 5.37 84.93 0.46 0.50 16 16 N -0.88 -47.96 10.84 21.65 0.23 -47.72 16 17 Si 1.01 39.48 29.56 68.60 2.03 41.51 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 20 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 21 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.85 7.49 -2.39 -0.02 1.83 16 27 H 0.02 0.65 8.06 -2.39 -0.02 0.63 16 28 H 0.34 11.45 6.57 -89.70 -0.59 10.86 16 29 H 0.05 2.15 6.00 -2.39 -0.01 2.13 16 30 H 0.07 2.20 7.53 -2.39 -0.02 2.18 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.14 5.51 6.88 -2.91 -0.02 5.49 16 33 H 0.13 5.64 8.06 -2.91 -0.02 5.62 16 34 H 0.14 8.26 6.36 -2.91 -0.02 8.25 16 35 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -60.14 283.96 3.58 -56.56 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: 0.47 Total: 36.41 kcal Atomic # 6 Polarization: -50.24 SS G_CDS: 4.87 Total: -45.37 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -3.79 Total: -89.11 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -60.14 3.58 -56.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085836468.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.215 kcal (2) G-P(sol) polarization free energy of solvation -60.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds